data_5GUX
#
_model_server_result.job_id            ZoyOGH-wupQrm4YTKKw8jQ 
_model_server_result.datetime_utc      '2024-11-20 16:24:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gux 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":802}' 
#
_entry.id    5GUX 
#
_exptl.entry_id    5GUX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GUX 
_cell.length_a            89.843 
_cell.length_b            105.379 
_cell.length_c            192.577 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GUX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B 1 1 
C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 151 H CYS 151 1_555 B SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 D SG CYS 61 C CYS 61 1_555 S CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? 
covale ? covale2 D SG CYS 64 C CYS 64 1_555 S CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? 
metalc ? metalc1 C NE2 HIS 60 B HIS 60 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc2 C OE1 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 C OE2 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc4 C ND1 HIS 207 B HIS 207 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc5 C OE1 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc6 C OE2 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc7 C NE2 HIS 258 B HIS 258 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc8 C NE2 HIS 259 B HIS 259 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc9 C NE2 HIS 347 B HIS 347 1_555 F FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc10 C NE2 HIS 349 B HIS 349 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc11 E O2D HEM . B HEM 801 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc12 F FE HEM . B HEM 802 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc13 F O2A HEM . B HEM 802 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc14 G FE FE . B FE 803 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc15 R CA CA . B CA 814 1_555 D O GLY 71 C GLY 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc16 R CA CA . B CA 814 1_555 D OH TYR 73 C TYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc17 D NE2 HIS 65 C HIS 65 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc18 D SD MET 112 C MET 112 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 289 n n 
CHA C4D HEM doub 290 n n 
CHA HHA HEM sing 291 n n 
CHB C4A HEM sing 292 n n 
CHB C1B HEM doub 293 n n 
CHB HHB HEM sing 294 n n 
CHC C4B HEM sing 295 n n 
CHC C1C HEM doub 296 n n 
CHC HHC HEM sing 297 n n 
CHD C4C HEM doub 298 n n 
CHD C1D HEM sing 299 n n 
CHD HHD HEM sing 300 n n 
C1A C2A HEM doub 301 n y 
C1A NA HEM sing 302 n y 
C2A C3A HEM sing 303 n y 
C2A CAA HEM sing 304 n n 
C3A C4A HEM doub 305 n y 
C3A CMA HEM sing 306 n n 
C4A NA HEM sing 307 n y 
CMA HMA HEM sing 308 n n 
CMA HMAA HEM sing 309 n n 
CMA HMAB HEM sing 310 n n 
CAA CBA HEM sing 311 n n 
CAA HAA HEM sing 312 n n 
CAA HAAA HEM sing 313 n n 
CBA CGA HEM sing 314 n n 
CBA HBA HEM sing 315 n n 
CBA HBAA HEM sing 316 n n 
CGA O1A HEM doub 317 n n 
CGA O2A HEM sing 318 n n 
C1B C2B HEM sing 319 n n 
C1B NB HEM sing 320 n n 
C2B C3B HEM doub 321 n n 
C2B CMB HEM sing 322 n n 
C3B C4B HEM sing 323 n n 
C3B CAB HEM sing 324 n n 
C4B NB HEM doub 325 n n 
CMB HMB HEM sing 326 n n 
CMB HMBA HEM sing 327 n n 
CMB HMBB HEM sing 328 n n 
CAB CBB HEM doub 329 n n 
CAB HAB HEM sing 330 n n 
CBB HBB HEM sing 331 n n 
CBB HBBA HEM sing 332 n n 
C1C C2C HEM sing 333 n y 
C1C NC HEM sing 334 n y 
C2C C3C HEM doub 335 n y 
C2C CMC HEM sing 336 n n 
C3C C4C HEM sing 337 n y 
C3C CAC HEM sing 338 n n 
C4C NC HEM sing 339 n y 
CMC HMC HEM sing 340 n n 
CMC HMCA HEM sing 341 n n 
CMC HMCB HEM sing 342 n n 
CAC CBC HEM doub 343 n n 
CAC HAC HEM sing 344 n n 
CBC HBC HEM sing 345 n n 
CBC HBCA HEM sing 346 n n 
C1D C2D HEM sing 347 n n 
C1D ND HEM doub 348 n n 
C2D C3D HEM doub 349 n n 
C2D CMD HEM sing 350 n n 
C3D C4D HEM sing 351 n n 
C3D CAD HEM sing 352 n n 
C4D ND HEM sing 353 n n 
CMD HMD HEM sing 354 n n 
CMD HMDA HEM sing 355 n n 
CMD HMDB HEM sing 356 n n 
CAD CBD HEM sing 357 n n 
CAD HAD HEM sing 358 n n 
CAD HADA HEM sing 359 n n 
CBD CGD HEM sing 360 n n 
CBD HBD HEM sing 361 n n 
CBD HBDA HEM sing 362 n n 
CGD O1D HEM doub 363 n n 
CGD O2D HEM sing 364 n n 
O2A H2A HEM sing 365 n n 
O2D H2D HEM sing 366 n n 
FE NA HEM sing 367 n n 
FE NB HEM sing 368 n n 
FE NC HEM sing 369 n n 
FE ND HEM sing 370 n n 
#
_atom_sites.entry_id                     5GUX 
_atom_sites.fract_transf_matrix[1][1]    0.011131 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEM B 1 801 801 HEM HEM . 
F 5 HEM B 1 802 802 HEM HEM . 
G 6 FE B 1 803 803 FE FE . 
H 7 O B 1 804 804 O O . 
I 8 XE B 1 805 811 XE XE . 
J 8 XE B 1 806 812 XE XE . 
K 8 XE B 1 807 813 XE XE . 
L 8 XE B 1 808 814 XE XE . 
M 8 XE B 1 809 815 XE XE . 
N 8 XE B 1 810 816 XE XE . 
O 8 XE B 1 811 817 XE XE . 
P 9 10M B 1 812 820 10M 10M . 
Q 9 10M B 1 813 821 10M 10M . 
R 10 CA B 1 814 805 CA CA . 
S 11 HEC C 1 201 201 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 5 22.208 14.34 35.472 1 85.32 ? CHA HEM 802 B 1 
HETATM 2 C CHB HEM . . . F 5 23.737 18.84 35.608 1 92.12 ? CHB HEM 802 B 1 
HETATM 3 C CHC HEM . . . F 5 20.032 20.117 38.375 1 89.13 ? CHC HEM 802 B 1 
HETATM 4 C CHD HEM . . . F 5 18.144 15.798 37.789 1 85.37 ? CHD HEM 802 B 1 
HETATM 5 C C1A HEM . . . F 5 23.037 15.4 35.211 1 87 ? C1A HEM 802 B 1 
HETATM 6 C C2A HEM . . . F 5 24.262 15.487 34.43 1 86.61 ? C2A HEM 802 B 1 
HETATM 7 C C3A HEM . . . F 5 24.657 16.76 34.49 1 89.05 ? C3A HEM 802 B 1 
HETATM 8 C C4A HEM . . . F 5 23.691 17.494 35.293 1 93.15 ? C4A HEM 802 B 1 
HETATM 9 C CMA HEM . . . F 5 25.928 17.325 33.811 1 89.05 ? CMA HEM 802 B 1 
HETATM 10 C CAA HEM . . . F 5 25.036 14.399 33.652 1 82.91 ? CAA HEM 802 B 1 
HETATM 11 C CBA HEM . . . F 5 25.872 13.702 34.72 1 89.8 ? CBA HEM 802 B 1 
HETATM 12 C CGA HEM . . . F 5 26.841 12.667 34.206 1 94.85 ? CGA HEM 802 B 1 
HETATM 13 O O1A HEM . . . F 5 26.792 11.455 34.544 1 102.07 ? O1A HEM 802 B 1 
HETATM 14 O O2A HEM . . . F 5 27.738 13.024 33.402 1 100.92 ? O2A HEM 802 B 1 
HETATM 15 C C1B HEM . . . F 5 22.894 19.579 36.418 1 86.64 ? C1B HEM 802 B 1 
HETATM 16 C C2B HEM . . . F 5 23.139 20.95 36.845 1 83.08 ? C2B HEM 802 B 1 
HETATM 17 C C3B HEM . . . F 5 22.115 21.338 37.618 1 84.24 ? C3B HEM 802 B 1 
HETATM 18 C C4B HEM . . . F 5 21.237 20.176 37.712 1 85.93 ? C4B HEM 802 B 1 
HETATM 19 C CMB HEM . . . F 5 24.343 21.814 36.409 1 77.82 ? CMB HEM 802 B 1 
HETATM 20 C CAB HEM . . . F 5 21.911 22.711 38.317 1 75.83 ? CAB HEM 802 B 1 
HETATM 21 C CBB HEM . . . F 5 22.207 23.858 37.708 1 71.4 ? CBB HEM 802 B 1 
HETATM 22 C C1C HEM . . . F 5 19.147 19.069 38.437 1 89.64 ? C1C HEM 802 B 1 
HETATM 23 C C2C HEM . . . F 5 17.9 19.076 39.168 1 85.69 ? C2C HEM 802 B 1 
HETATM 24 C C3C HEM . . . F 5 17.338 17.878 39.013 1 85.76 ? C3C HEM 802 B 1 
HETATM 25 C C4C HEM . . . F 5 18.246 17.101 38.187 1 87.44 ? C4C HEM 802 B 1 
HETATM 26 C CMC HEM . . . F 5 17.361 20.309 39.916 1 85.46 ? CMC HEM 802 B 1 
HETATM 27 C CAC HEM . . . F 5 15.986 17.368 39.568 1 83.41 ? CAC HEM 802 B 1 
HETATM 28 C CBC HEM . . . F 5 14.818 17.943 39.238 1 79.33 ? CBC HEM 802 B 1 
HETATM 29 C C1D HEM . . . F 5 19.076 15.01 37.165 1 83.41 ? C1D HEM 802 B 1 
HETATM 30 C C2D HEM . . . F 5 18.93 13.579 37.002 1 84.33 ? C2D HEM 802 B 1 
HETATM 31 C C3D HEM . . . F 5 20.197 13.158 36.258 1 83.32 ? C3D HEM 802 B 1 
HETATM 32 C C4D HEM . . . F 5 20.972 14.368 36.091 1 85.13 ? C4D HEM 802 B 1 
HETATM 33 C CMD HEM . . . F 5 17.785 12.633 37.407 1 85.99 ? CMD HEM 802 B 1 
HETATM 34 C CAD HEM . . . F 5 20.528 11.725 35.81 1 83.95 ? CAD HEM 802 B 1 
HETATM 35 C CBD HEM . . . F 5 19.891 11.413 34.458 1 82.31 ? CBD HEM 802 B 1 
HETATM 36 C CGD HEM . . . F 5 20.467 10.098 33.987 1 82.66 ? CGD HEM 802 B 1 
HETATM 37 O O1D HEM . . . F 5 21.08 10.193 32.899 1 87.25 ? O1D HEM 802 B 1 
HETATM 38 O O2D HEM . . . F 5 20.405 8.989 34.594 1 74.83 ? O2D HEM 802 B 1 
HETATM 39 N NA HEM . . . F 5 22.707 16.628 35.751 1 91.97 ? NA HEM 802 B 1 
HETATM 40 N NB HEM . . . F 5 21.742 19.099 37.017 1 83.53 ? NB HEM 802 B 1 
HETATM 41 N NC HEM . . . F 5 19.368 17.826 37.873 1 89.73 ? NC HEM 802 B 1 
HETATM 42 N ND HEM . . . F 5 20.288 15.429 36.669 1 82.7 ? ND HEM 802 B 1 
HETATM 43 FE FE HEM . . . F 5 21.015 17.211 36.896 1 84.23 ? FE HEM 802 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#