data_5GUX # _model_server_result.job_id ledQvP1V6DRU-gTxp5x0XQ _model_server_result.datetime_utc '2024-11-20 16:38:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":806}' # _entry.id 5GUX # _exptl.entry_id 5GUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.293 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description XENON _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GUX _cell.length_a 89.843 _cell.length_b 105.379 _cell.length_c 192.577 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1 C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N ? 8 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 151 H CYS 151 1_555 B SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 D SG CYS 61 C CYS 61 1_555 S CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale2 D SG CYS 64 C CYS 64 1_555 S CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc1 C NE2 HIS 60 B HIS 60 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc2 C OE1 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 C OE2 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc4 C ND1 HIS 207 B HIS 207 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 C OE1 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc6 C OE2 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc7 C NE2 HIS 258 B HIS 258 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc8 C NE2 HIS 259 B HIS 259 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 C NE2 HIS 347 B HIS 347 1_555 F FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc10 C NE2 HIS 349 B HIS 349 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc11 E O2D HEM . B HEM 801 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc12 F FE HEM . B HEM 802 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc13 F O2A HEM . B HEM 802 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc14 G FE FE . B FE 803 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc15 R CA CA . B CA 814 1_555 D O GLY 71 C GLY 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc16 R CA CA . B CA 814 1_555 D OH TYR 73 C TYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc17 D NE2 HIS 65 C HIS 65 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc18 D SD MET 112 C MET 112 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? # _chem_comp.formula Xe _chem_comp.formula_weight 131.293 _chem_comp.id XE _chem_comp.mon_nstd_flag . _chem_comp.name XENON _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GUX _atom_sites.fract_transf_matrix[1][1] 0.011131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM B 1 801 801 HEM HEM . F 5 HEM B 1 802 802 HEM HEM . G 6 FE B 1 803 803 FE FE . H 7 O B 1 804 804 O O . I 8 XE B 1 805 811 XE XE . J 8 XE B 1 806 812 XE XE . K 8 XE B 1 807 813 XE XE . L 8 XE B 1 808 814 XE XE . M 8 XE B 1 809 815 XE XE . N 8 XE B 1 810 816 XE XE . O 8 XE B 1 811 817 XE XE . P 9 10M B 1 812 820 10M 10M . Q 9 10M B 1 813 821 10M 10M . R 10 CA B 1 814 805 CA CA . S 11 HEC C 1 201 201 HEC HEC . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol XE _atom_site.label_atom_id XE _atom_site.label_comp_id XE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 8 _atom_site.Cartn_x 31.242 _atom_site.Cartn_y 18.673 _atom_site.Cartn_z 37.742 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 91.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id XE _atom_site.auth_comp_id XE _atom_site.auth_seq_id 806 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 476 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #