data_5GUX
#
_model_server_result.job_id            7MFCkadtVmsKLdhdM2PndA 
_model_server_result.datetime_utc      '2024-11-20 16:32:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gux 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":813}' 
#
_entry.id    5GUX 
#
_exptl.entry_id    5GUX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              498.628 
_entity.id                          9 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GUX 
_cell.length_a            89.843 
_cell.length_b            105.379 
_cell.length_c            192.577 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GUX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B 1 1 
C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 P N N 
? 9 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 151 H CYS 151 1_555 B SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 D SG CYS 61 C CYS 61 1_555 S CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? 
covale ? covale2 D SG CYS 64 C CYS 64 1_555 S CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? 
metalc ? metalc1 C NE2 HIS 60 B HIS 60 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc2 C OE1 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 C OE2 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc4 C ND1 HIS 207 B HIS 207 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc5 C OE1 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc6 C OE2 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc7 C NE2 HIS 258 B HIS 258 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc8 C NE2 HIS 259 B HIS 259 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc9 C NE2 HIS 347 B HIS 347 1_555 F FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc10 C NE2 HIS 349 B HIS 349 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc11 E O2D HEM . B HEM 801 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc12 F FE HEM . B HEM 802 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc13 F O2A HEM . B HEM 802 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc14 G FE FE . B FE 803 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc15 R CA CA . B CA 814 1_555 D O GLY 71 C GLY 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc16 R CA CA . B CA 814 1_555 D OH TYR 73 C TYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc17 D NE2 HIS 65 C HIS 65 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc18 D SD MET 112 C MET 112 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
#
_chem_comp.formula           'C22 H42 O10 S' 
_chem_comp.formula_weight    498.628 
_chem_comp.id                10M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '(2R,3R,4S,5S,6R)-2-((2R,3S,4R,5R,6S)-6-Decylsulfanyl-4,5-dihydroxy-2-hydroxymethyl-tetrahydro-pyran-3-yloxy)-6-hydroxymethyl-tetrahydro-pyran-3,4,5-triol, n-Decyl-beta-D-thiomaltoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O10 C22 10M sing 1 n n 
C22 C21 10M sing 2 n n 
C22 C11 10M sing 3 n n 
C21 O9 10M sing 4 n n 
C21 C14 10M sing 5 n n 
C14 O3 10M sing 6 n n 
C14 C12 10M sing 7 n n 
O3 C15 10M sing 8 n n 
C15 C20 10M sing 9 n n 
C15 O4 10M sing 10 n n 
C20 O8 10M sing 11 n n 
C20 C19 10M sing 12 n n 
C19 O7 10M sing 13 n n 
C19 C18 10M sing 14 n n 
C18 O6 10M sing 15 n n 
C18 C16 10M sing 16 n n 
C16 C17 10M sing 17 n n 
C16 O4 10M sing 18 n n 
C17 O5 10M sing 19 n n 
C12 C13 10M sing 20 n n 
C12 O1 10M sing 21 n n 
C13 O2 10M sing 22 n n 
O1 C11 10M sing 23 n n 
C11 S 10M sing 24 n n 
S C10 10M sing 25 n n 
C10 C9 10M sing 26 n n 
C9 C8 10M sing 27 n n 
C8 C7 10M sing 28 n n 
C7 C6 10M sing 29 n n 
C6 C5 10M sing 30 n n 
C5 C4 10M sing 31 n n 
C4 C3 10M sing 32 n n 
C3 C2 10M sing 33 n n 
C2 C1 10M sing 34 n n 
O10 HO10 10M sing 35 n n 
C22 H22 10M sing 36 n n 
C21 H21 10M sing 37 n n 
O9 HO9 10M sing 38 n n 
C14 H14 10M sing 39 n n 
C15 H15 10M sing 40 n n 
C20 H20 10M sing 41 n n 
O8 HO8 10M sing 42 n n 
C19 H19 10M sing 43 n n 
O7 HO7 10M sing 44 n n 
C18 H18 10M sing 45 n n 
O6 HO6 10M sing 46 n n 
C16 H16 10M sing 47 n n 
C17 H17 10M sing 48 n n 
C17 H17A 10M sing 49 n n 
O5 HO5 10M sing 50 n n 
C12 H12 10M sing 51 n n 
C13 H13 10M sing 52 n n 
C13 H13A 10M sing 53 n n 
O2 HO2 10M sing 54 n n 
C11 H11 10M sing 55 n n 
C10 H10 10M sing 56 n n 
C10 H10A 10M sing 57 n n 
C9 H9 10M sing 58 n n 
C9 H9A 10M sing 59 n n 
C8 H8 10M sing 60 n n 
C8 H8A 10M sing 61 n n 
C7 H7 10M sing 62 n n 
C7 H7A 10M sing 63 n n 
C6 H6 10M sing 64 n n 
C6 H6A 10M sing 65 n n 
C5 H5 10M sing 66 n n 
C5 H5A 10M sing 67 n n 
C4 H4 10M sing 68 n n 
C4 H4A 10M sing 69 n n 
C3 H3 10M sing 70 n n 
C3 H3A 10M sing 71 n n 
C2 H2 10M sing 72 n n 
C2 H2A 10M sing 73 n n 
C1 H1 10M sing 74 n n 
C1 H1A 10M sing 75 n n 
C1 H1B 10M sing 76 n n 
#
_atom_sites.entry_id                     5GUX 
_atom_sites.fract_transf_matrix[1][1]    0.011131 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEM B 1 801 801 HEM HEM . 
F 5 HEM B 1 802 802 HEM HEM . 
G 6 FE B 1 803 803 FE FE . 
H 7 O B 1 804 804 O O . 
I 8 XE B 1 805 811 XE XE . 
J 8 XE B 1 806 812 XE XE . 
K 8 XE B 1 807 813 XE XE . 
L 8 XE B 1 808 814 XE XE . 
M 8 XE B 1 809 815 XE XE . 
N 8 XE B 1 810 816 XE XE . 
O 8 XE B 1 811 817 XE XE . 
P 9 10M B 1 812 820 10M 10M . 
Q 9 10M B 1 813 821 10M 10M . 
R 10 CA B 1 814 805 CA CA . 
S 11 HEC C 1 201 201 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O10 10M . . . Q 9 4.723 0.63 30.756 1 156.68 ? O10 10M 813 B 1 
HETATM 2 C C22 10M . . . Q 9 5.357 0.152 29.574 1 159.11 ? C22 10M 813 B 1 
HETATM 3 C C21 10M . . . Q 9 5.677 -1.333 29.743 1 160.27 ? C21 10M 813 B 1 
HETATM 4 O O9 10M . . . Q 9 4.459 -2.076 29.834 1 167.97 ? O9 10M 813 B 1 
HETATM 5 C C14 10M . . . Q 9 6.514 -1.868 28.575 1 156.76 ? C14 10M 813 B 1 
HETATM 6 O O3 10M . . . Q 9 6.932 -3.206 28.88 1 167.27 ? O3 10M 813 B 1 
HETATM 7 C C15 10M . . . Q 9 6.081 -4.297 28.476 1 178.21 ? C15 10M 813 B 1 
HETATM 8 C C20 10M . . . Q 9 6.431 -5.556 29.292 1 183.52 ? C20 10M 813 B 1 
HETATM 9 O O8 10M . . . Q 9 6.447 -5.227 30.687 1 196.02 ? O8 10M 813 B 1 
HETATM 10 C C19 10M . . . Q 9 7.793 -6.153 28.872 1 179.47 ? C19 10M 813 B 1 
HETATM 11 O O7 10M . . . Q 9 7.927 -7.447 29.451 1 182.64 ? O7 10M 813 B 1 
HETATM 12 C C18 10M . . . Q 9 7.931 -6.267 27.341 1 173.65 ? C18 10M 813 B 1 
HETATM 13 O O6 10M . . . Q 9 9.281 -6.587 27.005 1 162.87 ? O6 10M 813 B 1 
HETATM 14 C C16 10M . . . Q 9 7.562 -4.935 26.678 1 172.43 ? C16 10M 813 B 1 
HETATM 15 C C17 10M . . . Q 9 7.582 -4.971 25.154 1 170.44 ? C17 10M 813 B 1 
HETATM 16 O O5 10M . . . Q 9 6.865 -3.837 24.649 1 163.48 ? O5 10M 813 B 1 
HETATM 17 O O4 10M . . . Q 9 6.221 -4.555 27.066 1 174.43 ? O4 10M 813 B 1 
HETATM 18 C C12 10M . . . Q 9 7.734 -0.96 28.333 1 151.91 ? C12 10M 813 B 1 
HETATM 19 C C13 10M . . . Q 9 8.41 -1.355 27.045 1 153.76 ? C13 10M 813 B 1 
HETATM 20 O O2 10M . . . Q 9 7.643 -0.858 25.944 1 152.08 ? O2 10M 813 B 1 
HETATM 21 O O1 10M . . . Q 9 7.324 0.413 28.193 1 157.4 ? O1 10M 813 B 1 
HETATM 22 C C11 10M . . . Q 9 6.657 0.926 29.342 1 158 ? C11 10M 813 B 1 
HETATM 23 S S 10M . . . Q 9 6.316 2.685 29.143 1 148.58 ? S 10M 813 B 1 
HETATM 24 C C10 10M . . . Q 9 7.941 3.387 29.539 1 139.51 ? C10 10M 813 B 1 
HETATM 25 C C9 10M . . . Q 9 7.858 4.823 30.084 1 137.56 ? C9 10M 813 B 1 
HETATM 26 C C8 10M . . . Q 9 9.237 5.492 30.129 1 124.65 ? C8 10M 813 B 1 
HETATM 27 C C7 10M . . . Q 9 9.571 6.189 28.803 1 116.77 ? C7 10M 813 B 1 
HETATM 28 C C6 10M . . . Q 9 9.514 7.703 28.962 1 107 ? C6 10M 813 B 1 
HETATM 29 C C5 10M . . . Q 9 10.421 8.41 27.955 1 102.98 ? C5 10M 813 B 1 
HETATM 30 C C4 10M . . . Q 9 10 9.886 27.799 1 109.5 ? C4 10M 813 B 1 
HETATM 31 C C3 10M . . . Q 9 11.043 10.9 28.346 1 108.09 ? C3 10M 813 B 1 
HETATM 32 C C2 10M . . . Q 9 10.394 12.041 29.18 1 97.4 ? C2 10M 813 B 1 
HETATM 33 C C1 10M . . . Q 9 10.971 13.424 28.799 1 85.34 ? C1 10M 813 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#