data_5GV2
#
_model_server_result.job_id            eVCH3K0y5Ol7Nf5tEw7sQw 
_model_server_result.datetime_utc      '2025-03-04 13:58:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gv2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    5GV2 
#
_exptl.entry_id    5GV2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.209 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ARGININE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.21 
_cell.angle_gamma         90 
_cell.entry_id            5GV2 
_cell.length_a            47.547 
_cell.length_b            76.834 
_cell.length_c            95.223 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GV2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H15 N4 O2 1' 
_chem_comp.formula_weight    175.209 
_chem_comp.id                ARG 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ARGININE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ARG sing 13 n n 
N H ARG sing 14 n n 
N H2 ARG sing 15 n n 
CA C ARG sing 16 n n 
CA CB ARG sing 17 n n 
CA HA ARG sing 18 n n 
C O ARG doub 19 n n 
C OXT ARG sing 20 n n 
CB CG ARG sing 21 n n 
CB HB2 ARG sing 22 n n 
CB HB3 ARG sing 23 n n 
CG CD ARG sing 24 n n 
CG HG2 ARG sing 25 n n 
CG HG3 ARG sing 26 n n 
CD NE ARG sing 27 n n 
CD HD2 ARG sing 28 n n 
CD HD3 ARG sing 29 n n 
NE CZ ARG sing 30 n n 
NE HE ARG sing 31 n n 
CZ NH1 ARG sing 32 n n 
CZ NH2 ARG doub 33 n n 
NH1 HH11 ARG sing 34 n n 
NH1 HH12 ARG sing 35 n n 
NH2 HH21 ARG sing 36 n n 
NH2 HH22 ARG sing 37 n n 
OXT HXT ARG sing 38 n n 
#
_atom_sites.entry_id                     5GV2 
_atom_sites.fract_transf_matrix[1][1]    0.021032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002287 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG C 1 501 1 MG MG . 
D 3 ARG A 1 401 401 ARG ARG . 
E 4 HOH C 1 601 22 HOH HOH . 
E 4 HOH C 2 602 11 HOH HOH . 
E 4 HOH C 3 603 52 HOH HOH . 
E 4 HOH C 4 604 51 HOH HOH . 
E 4 HOH C 5 605 104 HOH HOH . 
E 4 HOH C 6 606 31 HOH HOH . 
E 4 HOH C 7 607 39 HOH HOH . 
E 4 HOH C 8 608 14 HOH HOH . 
E 4 HOH C 9 609 9 HOH HOH . 
E 4 HOH C 10 610 105 HOH HOH . 
E 4 HOH C 11 611 64 HOH HOH . 
E 4 HOH C 12 612 85 HOH HOH . 
E 4 HOH C 13 613 13 HOH HOH . 
E 4 HOH C 14 614 88 HOH HOH . 
E 4 HOH C 15 615 35 HOH HOH . 
E 4 HOH C 16 616 131 HOH HOH . 
E 4 HOH C 17 617 78 HOH HOH . 
E 4 HOH C 18 618 21 HOH HOH . 
E 4 HOH C 19 619 138 HOH HOH . 
E 4 HOH C 20 620 137 HOH HOH . 
E 4 HOH C 21 621 46 HOH HOH . 
E 4 HOH C 22 622 41 HOH HOH . 
E 4 HOH C 23 623 96 HOH HOH . 
E 4 HOH C 24 624 44 HOH HOH . 
E 4 HOH C 25 625 8 HOH HOH . 
E 4 HOH C 26 626 20 HOH HOH . 
E 4 HOH C 27 627 19 HOH HOH . 
E 4 HOH C 28 628 24 HOH HOH . 
E 4 HOH C 29 629 50 HOH HOH . 
E 4 HOH C 30 630 127 HOH HOH . 
E 4 HOH C 31 631 79 HOH HOH . 
E 4 HOH C 32 632 80 HOH HOH . 
E 4 HOH C 33 633 34 HOH HOH . 
E 4 HOH C 34 634 28 HOH HOH . 
E 4 HOH C 35 635 3 HOH HOH . 
E 4 HOH C 36 636 118 HOH HOH . 
E 4 HOH C 37 637 23 HOH HOH . 
E 4 HOH C 38 638 61 HOH HOH . 
E 4 HOH C 39 639 15 HOH HOH . 
E 4 HOH C 40 640 102 HOH HOH . 
E 4 HOH C 41 641 43 HOH HOH . 
E 4 HOH C 42 642 49 HOH HOH . 
E 4 HOH C 43 643 62 HOH HOH . 
E 4 HOH C 44 644 60 HOH HOH . 
E 4 HOH C 45 645 75 HOH HOH . 
E 4 HOH C 46 646 42 HOH HOH . 
E 4 HOH C 47 647 106 HOH HOH . 
E 4 HOH C 48 648 86 HOH HOH . 
E 4 HOH C 49 649 57 HOH HOH . 
E 4 HOH C 50 650 71 HOH HOH . 
E 4 HOH C 51 651 87 HOH HOH . 
E 4 HOH C 52 652 84 HOH HOH . 
E 4 HOH C 53 653 145 HOH HOH . 
E 4 HOH C 54 654 82 HOH HOH . 
E 4 HOH C 55 655 129 HOH HOH . 
E 4 HOH C 56 656 37 HOH HOH . 
E 4 HOH C 57 657 5 HOH HOH . 
E 4 HOH C 58 658 144 HOH HOH . 
E 4 HOH C 59 659 68 HOH HOH . 
E 4 HOH C 60 660 139 HOH HOH . 
E 4 HOH C 61 661 63 HOH HOH . 
E 4 HOH C 62 662 143 HOH HOH . 
E 4 HOH C 63 663 2 HOH HOH . 
E 4 HOH C 64 664 83 HOH HOH . 
E 4 HOH C 65 665 114 HOH HOH . 
E 4 HOH C 66 666 38 HOH HOH . 
E 4 HOH C 67 667 117 HOH HOH . 
E 4 HOH C 68 668 29 HOH HOH . 
E 4 HOH C 69 669 99 HOH HOH . 
E 4 HOH C 70 670 128 HOH HOH . 
E 4 HOH C 71 671 56 HOH HOH . 
E 4 HOH C 72 672 125 HOH HOH . 
E 4 HOH C 73 673 121 HOH HOH . 
E 4 HOH C 74 674 115 HOH HOH . 
E 4 HOH C 75 675 130 HOH HOH . 
E 4 HOH C 76 676 100 HOH HOH . 
E 4 HOH C 77 677 126 HOH HOH . 
F 4 HOH A 1 501 108 HOH HOH . 
F 4 HOH A 2 502 17 HOH HOH . 
F 4 HOH A 3 503 111 HOH HOH . 
F 4 HOH A 4 504 109 HOH HOH . 
F 4 HOH A 5 505 69 HOH HOH . 
F 4 HOH A 6 506 77 HOH HOH . 
F 4 HOH A 7 507 81 HOH HOH . 
F 4 HOH A 8 508 119 HOH HOH . 
F 4 HOH A 9 509 1 HOH HOH . 
F 4 HOH A 10 510 74 HOH HOH . 
F 4 HOH A 11 511 54 HOH HOH . 
F 4 HOH A 12 512 92 HOH HOH . 
F 4 HOH A 13 513 148 HOH HOH . 
F 4 HOH A 14 514 94 HOH HOH . 
F 4 HOH A 15 515 112 HOH HOH . 
F 4 HOH A 16 516 65 HOH HOH . 
F 4 HOH A 17 517 76 HOH HOH . 
F 4 HOH A 18 518 32 HOH HOH . 
F 4 HOH A 19 519 12 HOH HOH . 
F 4 HOH A 20 520 53 HOH HOH . 
F 4 HOH A 21 521 110 HOH HOH . 
F 4 HOH A 22 522 55 HOH HOH . 
F 4 HOH A 23 523 27 HOH HOH . 
F 4 HOH A 24 524 30 HOH HOH . 
F 4 HOH A 25 525 113 HOH HOH . 
F 4 HOH A 26 526 25 HOH HOH . 
F 4 HOH A 27 527 72 HOH HOH . 
F 4 HOH A 28 528 147 HOH HOH . 
F 4 HOH A 29 529 107 HOH HOH . 
F 4 HOH A 30 530 120 HOH HOH . 
F 4 HOH A 31 531 7 HOH HOH . 
F 4 HOH A 32 532 70 HOH HOH . 
F 4 HOH A 33 533 98 HOH HOH . 
F 4 HOH A 34 534 59 HOH HOH . 
F 4 HOH A 35 535 40 HOH HOH . 
F 4 HOH A 36 536 89 HOH HOH . 
F 4 HOH A 37 537 73 HOH HOH . 
F 4 HOH A 38 538 6 HOH HOH . 
F 4 HOH A 39 539 18 HOH HOH . 
F 4 HOH A 40 540 95 HOH HOH . 
F 4 HOH A 41 541 142 HOH HOH . 
F 4 HOH A 42 542 58 HOH HOH . 
F 4 HOH A 43 543 103 HOH HOH . 
F 4 HOH A 44 544 45 HOH HOH . 
F 4 HOH A 45 545 146 HOH HOH . 
F 4 HOH A 46 546 33 HOH HOH . 
F 4 HOH A 47 547 48 HOH HOH . 
F 4 HOH A 48 548 26 HOH HOH . 
F 4 HOH A 49 549 36 HOH HOH . 
F 4 HOH A 50 550 116 HOH HOH . 
F 4 HOH A 51 551 122 HOH HOH . 
F 4 HOH A 52 552 4 HOH HOH . 
F 4 HOH A 53 553 16 HOH HOH . 
F 4 HOH A 54 554 90 HOH HOH . 
F 4 HOH A 55 555 134 HOH HOH . 
F 4 HOH A 56 556 123 HOH HOH . 
F 4 HOH A 57 557 66 HOH HOH . 
F 4 HOH A 58 558 91 HOH HOH . 
F 4 HOH A 59 559 93 HOH HOH . 
F 4 HOH A 60 560 97 HOH HOH . 
F 4 HOH A 61 561 47 HOH HOH . 
F 4 HOH A 62 562 10 HOH HOH . 
F 4 HOH A 63 563 133 HOH HOH . 
F 4 HOH A 64 564 135 HOH HOH . 
F 4 HOH A 65 565 101 HOH HOH . 
F 4 HOH A 66 566 124 HOH HOH . 
F 4 HOH A 67 567 140 HOH HOH . 
F 4 HOH A 68 568 149 HOH HOH . 
F 4 HOH A 69 569 136 HOH HOH . 
F 4 HOH A 70 570 141 HOH HOH . 
F 4 HOH A 71 571 132 HOH HOH . 
F 4 HOH A 72 572 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ARG . . . D 3 23.69 -7.227 53.856 1 18.6 ? N ARG 401 A 1 
HETATM 2 C CA ARG . . . D 3 24.881 -6.475 54.345 1 20.19 ? CA ARG 401 A 1 
HETATM 3 C C ARG . . . D 3 24.625 -5.957 55.785 1 19.44 ? C ARG 401 A 1 
HETATM 4 O O ARG . . . D 3 23.545 -6.081 56.33 1 19.38 ? O ARG 401 A 1 
HETATM 5 C CB ARG . . . D 3 25.268 -5.303 53.41 1 20.65 ? CB ARG 401 A 1 
HETATM 6 C CG ARG . . . D 3 25.322 -5.661 51.929 1 21.99 ? CG ARG 401 A 1 
HETATM 7 C CD ARG . . . D 3 26.472 -6.594 51.616 1 22.14 ? CD ARG 401 A 1 
HETATM 8 N NE ARG . . . D 3 26.177 -7.428 50.482 1 22.59 ? NE ARG 401 A 1 
HETATM 9 C CZ ARG . . . D 3 26.132 -7.033 49.216 1 23.97 ? CZ ARG 401 A 1 
HETATM 10 N NH1 ARG . . . D 3 26.433 -5.788 48.84 1 21.73 ? NH1 ARG 401 A 1 
HETATM 11 N NH2 ARG . . . D 3 25.792 -7.932 48.294 1 27.46 ? NH2 ARG 401 A 1 
HETATM 12 O OXT ARG . . . D 3 25.504 -5.4 56.404 1 20.08 ? OXT ARG 401 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           12 
#