data_5GV4 # _model_server_result.job_id jkFNSbpsoaF94NdoFEJ6qA _model_server_result.datetime_utc '2024-11-14 18:56:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5GV4 # _exptl.entry_id 5GV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.031 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GV4 _cell.length_a 65.62 _cell.length_b 65.62 _cell.length_c 141.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 13 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 13 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 74 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 74 _struct_conn.ptnr2_symmetry 7_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H5 O6 P' _chem_comp.formula_weight 156.031 _chem_comp.id PGA _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PGA sing 246 n n P O2P PGA doub 247 n n P O3P PGA sing 248 n n P O4P PGA sing 249 n n O1P C2 PGA sing 250 n n O3P HOP3 PGA sing 251 n n O4P HOP4 PGA sing 252 n n C2 C1 PGA sing 253 n n C2 H21 PGA sing 254 n n C2 H22 PGA sing 255 n n C1 O1 PGA doub 256 n n C1 O2 PGA sing 257 n n O2 HO2 PGA sing 258 n n # _atom_sites.entry_id 5GV4 _atom_sites.fract_transf_matrix[1][1] 0.015239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGA A 1 301 1 PGA PGA . C 3 EDO A 1 302 1 EDO EDO . D 3 EDO A 1 303 2 EDO EDO . E 3 EDO A 1 304 3 EDO EDO . F 3 EDO A 1 305 4 EDO EDO . G 3 EDO A 1 306 5 EDO EDO . H 4 HOH A 1 401 206 HOH HOH . H 4 HOH A 2 402 90 HOH HOH . H 4 HOH A 3 403 87 HOH HOH . H 4 HOH A 4 404 137 HOH HOH . H 4 HOH A 5 405 25 HOH HOH . H 4 HOH A 6 406 127 HOH HOH . H 4 HOH A 7 407 73 HOH HOH . H 4 HOH A 8 408 75 HOH HOH . H 4 HOH A 9 409 187 HOH HOH . H 4 HOH A 10 410 83 HOH HOH . H 4 HOH A 11 411 70 HOH HOH . H 4 HOH A 12 412 102 HOH HOH . H 4 HOH A 13 413 91 HOH HOH . H 4 HOH A 14 414 49 HOH HOH . H 4 HOH A 15 415 171 HOH HOH . H 4 HOH A 16 416 48 HOH HOH . H 4 HOH A 17 417 113 HOH HOH . H 4 HOH A 18 418 7 HOH HOH . H 4 HOH A 19 419 138 HOH HOH . H 4 HOH A 20 420 119 HOH HOH . H 4 HOH A 21 421 124 HOH HOH . H 4 HOH A 22 422 165 HOH HOH . H 4 HOH A 23 423 105 HOH HOH . H 4 HOH A 24 424 43 HOH HOH . H 4 HOH A 25 425 125 HOH HOH . H 4 HOH A 26 426 170 HOH HOH . H 4 HOH A 27 427 11 HOH HOH . H 4 HOH A 28 428 72 HOH HOH . H 4 HOH A 29 429 112 HOH HOH . H 4 HOH A 30 430 44 HOH HOH . H 4 HOH A 31 431 169 HOH HOH . H 4 HOH A 32 432 53 HOH HOH . H 4 HOH A 33 433 109 HOH HOH . H 4 HOH A 34 434 4 HOH HOH . H 4 HOH A 35 435 10 HOH HOH . H 4 HOH A 36 436 40 HOH HOH . H 4 HOH A 37 437 8 HOH HOH . H 4 HOH A 38 438 136 HOH HOH . H 4 HOH A 39 439 5 HOH HOH . H 4 HOH A 40 440 45 HOH HOH . H 4 HOH A 41 441 29 HOH HOH . H 4 HOH A 42 442 39 HOH HOH . H 4 HOH A 43 443 17 HOH HOH . H 4 HOH A 44 444 42 HOH HOH . H 4 HOH A 45 445 94 HOH HOH . H 4 HOH A 46 446 92 HOH HOH . H 4 HOH A 47 447 14 HOH HOH . H 4 HOH A 48 448 60 HOH HOH . H 4 HOH A 49 449 32 HOH HOH . H 4 HOH A 50 450 3 HOH HOH . H 4 HOH A 51 451 81 HOH HOH . H 4 HOH A 52 452 30 HOH HOH . H 4 HOH A 53 453 168 HOH HOH . H 4 HOH A 54 454 174 HOH HOH . H 4 HOH A 55 455 163 HOH HOH . H 4 HOH A 56 456 46 HOH HOH . H 4 HOH A 57 457 19 HOH HOH . H 4 HOH A 58 458 31 HOH HOH . H 4 HOH A 59 459 2 HOH HOH . H 4 HOH A 60 460 57 HOH HOH . H 4 HOH A 61 461 101 HOH HOH . H 4 HOH A 62 462 22 HOH HOH . H 4 HOH A 63 463 202 HOH HOH . H 4 HOH A 64 464 55 HOH HOH . H 4 HOH A 65 465 79 HOH HOH . H 4 HOH A 66 466 89 HOH HOH . H 4 HOH A 67 467 167 HOH HOH . H 4 HOH A 68 468 64 HOH HOH . H 4 HOH A 69 469 15 HOH HOH . H 4 HOH A 70 470 34 HOH HOH . H 4 HOH A 71 471 9 HOH HOH . H 4 HOH A 72 472 20 HOH HOH . H 4 HOH A 73 473 173 HOH HOH . H 4 HOH A 74 474 166 HOH HOH . H 4 HOH A 75 475 98 HOH HOH . H 4 HOH A 76 476 21 HOH HOH . H 4 HOH A 77 477 36 HOH HOH . H 4 HOH A 78 478 177 HOH HOH . H 4 HOH A 79 479 1 HOH HOH . H 4 HOH A 80 480 54 HOH HOH . H 4 HOH A 81 481 37 HOH HOH . H 4 HOH A 82 482 132 HOH HOH . H 4 HOH A 83 483 77 HOH HOH . H 4 HOH A 84 484 140 HOH HOH . H 4 HOH A 85 485 115 HOH HOH . H 4 HOH A 86 486 151 HOH HOH . H 4 HOH A 87 487 35 HOH HOH . H 4 HOH A 88 488 131 HOH HOH . H 4 HOH A 89 489 26 HOH HOH . H 4 HOH A 90 490 74 HOH HOH . H 4 HOH A 91 491 78 HOH HOH . H 4 HOH A 92 492 100 HOH HOH . H 4 HOH A 93 493 13 HOH HOH . H 4 HOH A 94 494 68 HOH HOH . H 4 HOH A 95 495 66 HOH HOH . H 4 HOH A 96 496 71 HOH HOH . H 4 HOH A 97 497 201 HOH HOH . H 4 HOH A 98 498 33 HOH HOH . H 4 HOH A 99 499 107 HOH HOH . H 4 HOH A 100 500 117 HOH HOH . H 4 HOH A 101 501 52 HOH HOH . H 4 HOH A 102 502 118 HOH HOH . H 4 HOH A 103 503 51 HOH HOH . H 4 HOH A 104 504 203 HOH HOH . H 4 HOH A 105 505 80 HOH HOH . H 4 HOH A 106 506 6 HOH HOH . H 4 HOH A 107 507 126 HOH HOH . H 4 HOH A 108 508 56 HOH HOH . H 4 HOH A 109 509 23 HOH HOH . H 4 HOH A 110 510 198 HOH HOH . H 4 HOH A 111 511 85 HOH HOH . H 4 HOH A 112 512 62 HOH HOH . H 4 HOH A 113 513 28 HOH HOH . H 4 HOH A 114 514 58 HOH HOH . H 4 HOH A 115 515 182 HOH HOH . H 4 HOH A 116 516 12 HOH HOH . H 4 HOH A 117 517 188 HOH HOH . H 4 HOH A 118 518 84 HOH HOH . H 4 HOH A 119 519 96 HOH HOH . H 4 HOH A 120 520 61 HOH HOH . H 4 HOH A 121 521 95 HOH HOH . H 4 HOH A 122 522 18 HOH HOH . H 4 HOH A 123 523 211 HOH HOH . H 4 HOH A 124 524 67 HOH HOH . H 4 HOH A 125 525 210 HOH HOH . H 4 HOH A 126 526 176 HOH HOH . H 4 HOH A 127 527 114 HOH HOH . H 4 HOH A 128 528 193 HOH HOH . H 4 HOH A 129 529 16 HOH HOH . H 4 HOH A 130 530 69 HOH HOH . H 4 HOH A 131 531 143 HOH HOH . H 4 HOH A 132 532 59 HOH HOH . H 4 HOH A 133 533 213 HOH HOH . H 4 HOH A 134 534 196 HOH HOH . H 4 HOH A 135 535 186 HOH HOH . H 4 HOH A 136 536 93 HOH HOH . H 4 HOH A 137 537 86 HOH HOH . H 4 HOH A 138 538 104 HOH HOH . H 4 HOH A 139 539 139 HOH HOH . H 4 HOH A 140 540 103 HOH HOH . H 4 HOH A 141 541 65 HOH HOH . H 4 HOH A 142 542 158 HOH HOH . H 4 HOH A 143 543 145 HOH HOH . H 4 HOH A 144 544 27 HOH HOH . H 4 HOH A 145 545 172 HOH HOH . H 4 HOH A 146 546 192 HOH HOH . H 4 HOH A 147 547 212 HOH HOH . H 4 HOH A 148 548 130 HOH HOH . H 4 HOH A 149 549 150 HOH HOH . H 4 HOH A 150 550 47 HOH HOH . H 4 HOH A 151 551 121 HOH HOH . H 4 HOH A 152 552 38 HOH HOH . H 4 HOH A 153 553 88 HOH HOH . H 4 HOH A 154 554 133 HOH HOH . H 4 HOH A 155 555 116 HOH HOH . H 4 HOH A 156 556 111 HOH HOH . H 4 HOH A 157 557 141 HOH HOH . H 4 HOH A 158 558 97 HOH HOH . H 4 HOH A 159 559 41 HOH HOH . H 4 HOH A 160 560 209 HOH HOH . H 4 HOH A 161 561 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGA . . . B 2 -2.297 -10.773 18.857 1 20.21 ? P PGA 301 A 1 HETATM 2 O O1P PGA . . . B 2 -3.022 -10.102 17.578 1 19.01 ? O1P PGA 301 A 1 HETATM 3 O O2P PGA . . . B 2 -1.568 -11.963 18.252 1 18.36 ? O2P PGA 301 A 1 HETATM 4 O O3P PGA . . . B 2 -3.422 -11.183 19.772 1 19.07 ? O3P PGA 301 A 1 HETATM 5 O O4P PGA . . . B 2 -1.385 -9.691 19.43 1 18.74 ? O4P PGA 301 A 1 HETATM 6 C C2 PGA . . . B 2 -3.758 -8.888 17.817 1 20.31 ? C2 PGA 301 A 1 HETATM 7 C C1 PGA . . . B 2 -4.539 -8.496 16.589 1 20.88 ? C1 PGA 301 A 1 HETATM 8 O O1 PGA . . . B 2 -4.391 -9.17 15.536 1 23.81 ? O1 PGA 301 A 1 HETATM 9 O O2 PGA . . . B 2 -5.294 -7.509 16.658 1 19.86 ? O2 PGA 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #