data_5GVH
#
_model_server_result.job_id            '_hn92wtv1pO15BXt6VaRlw' 
_model_server_result.datetime_utc      '2025-03-13 17:04:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gvh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5GVH 
#
_exptl.entry_id    5GVH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.94 
_cell.angle_gamma         90 
_cell.entry_id            5GVH 
_cell.length_a            65.611 
_cell.length_b            77.107 
_cell.length_c            59.085 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GVH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -65.611 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ILE 212 A ILE 212 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc2 A O VAL 213 A VAL 213 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc3 A O ALA 215 A ALA 215 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc4 A O ALA 281 A ALA 281 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc5 A O ILE 284 A ILE 284 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc6 B NA NA . A NA 401 1_555 D O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     5GVH 
_atom_sites.fract_transf_matrix[1][1]    0.015241 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00267 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 401 401 NA NA . 
C 3 FMN A 1 402 402 FMN FMN . 
D 4 HOH A 1 501 28 HOH HOH . 
D 4 HOH A 2 502 13 HOH HOH . 
D 4 HOH A 3 503 45 HOH HOH . 
D 4 HOH A 4 504 8 HOH HOH . 
D 4 HOH A 5 505 12 HOH HOH . 
D 4 HOH A 6 506 9 HOH HOH . 
D 4 HOH A 7 507 53 HOH HOH . 
D 4 HOH A 8 508 36 HOH HOH . 
D 4 HOH A 9 509 61 HOH HOH . 
D 4 HOH A 10 510 50 HOH HOH . 
D 4 HOH A 11 511 11 HOH HOH . 
D 4 HOH A 12 512 5 HOH HOH . 
D 4 HOH A 13 513 15 HOH HOH . 
D 4 HOH A 14 514 42 HOH HOH . 
D 4 HOH A 15 515 37 HOH HOH . 
D 4 HOH A 16 516 24 HOH HOH . 
D 4 HOH A 17 517 30 HOH HOH . 
D 4 HOH A 18 518 18 HOH HOH . 
D 4 HOH A 19 519 26 HOH HOH . 
D 4 HOH A 20 520 40 HOH HOH . 
D 4 HOH A 21 521 14 HOH HOH . 
D 4 HOH A 22 522 2 HOH HOH . 
D 4 HOH A 23 523 20 HOH HOH . 
D 4 HOH A 24 524 39 HOH HOH . 
D 4 HOH A 25 525 4 HOH HOH . 
D 4 HOH A 26 526 27 HOH HOH . 
D 4 HOH A 27 527 23 HOH HOH . 
D 4 HOH A 28 528 57 HOH HOH . 
D 4 HOH A 29 529 33 HOH HOH . 
D 4 HOH A 30 530 47 HOH HOH . 
D 4 HOH A 31 531 56 HOH HOH . 
D 4 HOH A 32 532 38 HOH HOH . 
D 4 HOH A 33 533 17 HOH HOH . 
D 4 HOH A 34 534 3 HOH HOH . 
D 4 HOH A 35 535 1 HOH HOH . 
D 4 HOH A 36 536 34 HOH HOH . 
D 4 HOH A 37 537 32 HOH HOH . 
D 4 HOH A 38 538 43 HOH HOH . 
D 4 HOH A 39 539 6 HOH HOH . 
D 4 HOH A 40 540 35 HOH HOH . 
D 4 HOH A 41 541 31 HOH HOH . 
D 4 HOH A 42 542 19 HOH HOH . 
D 4 HOH A 43 543 22 HOH HOH . 
D 4 HOH A 44 544 51 HOH HOH . 
D 4 HOH A 45 545 21 HOH HOH . 
D 4 HOH A 46 546 46 HOH HOH . 
D 4 HOH A 47 547 41 HOH HOH . 
D 4 HOH A 48 548 49 HOH HOH . 
D 4 HOH A 49 549 7 HOH HOH . 
D 4 HOH A 50 550 16 HOH HOH . 
D 4 HOH A 51 551 58 HOH HOH . 
D 4 HOH A 52 552 29 HOH HOH . 
D 4 HOH A 53 553 60 HOH HOH . 
D 4 HOH A 54 554 59 HOH HOH . 
D 4 HOH A 55 555 44 HOH HOH . 
D 4 HOH A 56 556 10 HOH HOH . 
D 4 HOH A 57 557 55 HOH HOH . 
D 4 HOH A 58 558 48 HOH HOH . 
D 4 HOH A 59 559 52 HOH HOH . 
D 4 HOH A 60 560 54 HOH HOH . 
D 4 HOH A 61 561 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 3 -21.131 1.022 12.172 1 32.74 ? N1 FMN 402 A 1 
HETATM 2 C C2 FMN . . . C 3 -19.794 1.391 12.208 1 35.21 ? C2 FMN 402 A 1 
HETATM 3 O O2 FMN . . . C 3 -18.988 1.018 11.354 1 38.06 ? O2 FMN 402 A 1 
HETATM 4 N N3 FMN . . . C 3 -19.344 2.198 13.217 1 36.58 ? N3 FMN 402 A 1 
HETATM 5 C C4 FMN . . . C 3 -20.198 2.641 14.198 1 36.02 ? C4 FMN 402 A 1 
HETATM 6 O O4 FMN . . . C 3 -19.756 3.371 15.085 1 36.72 ? O4 FMN 402 A 1 
HETATM 7 C C4A FMN . . . C 3 -21.538 2.274 14.168 1 40.31 ? C4A FMN 402 A 1 
HETATM 8 N N5 FMN . . . C 3 -22.397 2.72 15.152 1 38.74 ? N5 FMN 402 A 1 
HETATM 9 C C5A FMN . . . C 3 -23.724 2.337 15.137 1 36.59 ? C5A FMN 402 A 1 
HETATM 10 C C6 FMN . . . C 3 -24.569 2.784 16.147 1 38.3 ? C6 FMN 402 A 1 
HETATM 11 C C7 FMN . . . C 3 -25.903 2.416 16.155 1 36.23 ? C7 FMN 402 A 1 
HETATM 12 C C7M FMN . . . C 3 -26.796 2.918 17.253 1 34.52 ? C7M FMN 402 A 1 
HETATM 13 C C8 FMN . . . C 3 -26.403 1.592 15.142 1 36.17 ? C8 FMN 402 A 1 
HETATM 14 C C8M FMN . . . C 3 -27.854 1.198 15.136 1 33.66 ? C8M FMN 402 A 1 
HETATM 15 C C9 FMN . . . C 3 -25.557 1.142 14.128 1 35.16 ? C9 FMN 402 A 1 
HETATM 16 C C9A FMN . . . C 3 -24.208 1.512 14.12 1 37.2 ? C9A FMN 402 A 1 
HETATM 17 N N10 FMN . . . C 3 -23.343 1.067 13.123 1 36.33 ? N10 FMN 402 A 1 
HETATM 18 C C10 FMN . . . C 3 -22.011 1.454 13.145 1 34.43 ? C10 FMN 402 A 1 
HETATM 19 C C1' FMN . . . C 3 -23.85 0.17 12.027 1 30.25 ? C1' FMN 402 A 1 
HETATM 20 C C2' FMN . . . C 3 -23.828 -1.279 12.507 1 29.64 ? C2' FMN 402 A 1 
HETATM 21 O O2' FMN . . . C 3 -22.493 -1.69 12.687 1 33.23 ? O2' FMN 402 A 1 
HETATM 22 C C3' FMN . . . C 3 -24.467 -2.236 11.509 1 32.07 ? C3' FMN 402 A 1 
HETATM 23 O O3' FMN . . . C 3 -23.627 -2.326 10.379 1 32.88 ? O3' FMN 402 A 1 
HETATM 24 C C4' FMN . . . C 3 -25.883 -1.817 11.131 1 33.2 ? C4' FMN 402 A 1 
HETATM 25 O O4' FMN . . . C 3 -26.607 -1.615 12.32 1 33.45 ? O4' FMN 402 A 1 
HETATM 26 C C5' FMN . . . C 3 -26.607 -2.909 10.352 1 32.8 ? C5' FMN 402 A 1 
HETATM 27 O O5' FMN . . . C 3 -27.954 -2.529 10.129 1 24.06 ? O5' FMN 402 A 1 
HETATM 28 P P FMN . . . C 3 -29.198 -3.061 11.024 1 26.65 ? P FMN 402 A 1 
HETATM 29 O O1P FMN . . . C 3 -30.432 -3.094 10.137 1 32.44 ? O1P FMN 402 A 1 
HETATM 30 O O2P FMN . . . C 3 -28.94 -4.432 11.599 1 23.56 ? O2P FMN 402 A 1 
HETATM 31 O O3P FMN . . . C 3 -29.459 -2.058 12.124 1 31.65 ? O3P FMN 402 A 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           31 
#