data_5GVI
#
_model_server_result.job_id            zzj3b3wT7dQ3F_c5tROXRA 
_model_server_result.datetime_utc      '2024-12-04 19:35:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gvi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    5GVI 
#
_exptl.entry_id    5GVI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5GVI 
_cell.length_a            130.27 
_cell.length_b            130.27 
_cell.length_c            59.881 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GVI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLY 76 B GLY 76 1_555 C NZ LYS 6 C LYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A SG CYS 173 A CYS 230 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc2 A SG CYS 176 A CYS 233 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc3 A SG CYS 223 A CYS 280 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc4 A SG CYS 226 A CYS 283 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5GVI 
_atom_sites.fract_transf_matrix[1][1]    0.007676 
_atom_sites.fract_transf_matrix[1][2]    0.004432 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008864 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZN A 1 601 1 ZN ZN . 
E 5 HOH A 1 701 142 HOH HOH . 
E 5 HOH A 2 702 82 HOH HOH . 
E 5 HOH A 3 703 96 HOH HOH . 
E 5 HOH A 4 704 139 HOH HOH . 
E 5 HOH A 5 705 91 HOH HOH . 
E 5 HOH A 6 706 89 HOH HOH . 
E 5 HOH A 7 707 137 HOH HOH . 
E 5 HOH A 8 708 125 HOH HOH . 
E 5 HOH A 9 709 148 HOH HOH . 
E 5 HOH A 10 710 85 HOH HOH . 
E 5 HOH A 11 711 132 HOH HOH . 
E 5 HOH A 12 712 64 HOH HOH . 
E 5 HOH A 13 713 43 HOH HOH . 
E 5 HOH A 14 714 147 HOH HOH . 
E 5 HOH A 15 715 3 HOH HOH . 
E 5 HOH A 16 716 44 HOH HOH . 
E 5 HOH A 17 717 2 HOH HOH . 
E 5 HOH A 18 718 81 HOH HOH . 
E 5 HOH A 19 719 53 HOH HOH . 
E 5 HOH A 20 720 124 HOH HOH . 
E 5 HOH A 21 721 49 HOH HOH . 
E 5 HOH A 22 722 52 HOH HOH . 
E 5 HOH A 23 723 39 HOH HOH . 
E 5 HOH A 24 724 15 HOH HOH . 
E 5 HOH A 25 725 47 HOH HOH . 
E 5 HOH A 26 726 71 HOH HOH . 
E 5 HOH A 27 727 116 HOH HOH . 
E 5 HOH A 28 728 4 HOH HOH . 
E 5 HOH A 29 729 117 HOH HOH . 
E 5 HOH A 30 730 11 HOH HOH . 
E 5 HOH A 31 731 51 HOH HOH . 
E 5 HOH A 32 732 14 HOH HOH . 
E 5 HOH A 33 733 143 HOH HOH . 
E 5 HOH A 34 734 6 HOH HOH . 
E 5 HOH A 35 735 8 HOH HOH . 
E 5 HOH A 36 736 141 HOH HOH . 
E 5 HOH A 37 737 25 HOH HOH . 
E 5 HOH A 38 738 76 HOH HOH . 
E 5 HOH A 39 739 13 HOH HOH . 
E 5 HOH A 40 740 26 HOH HOH . 
E 5 HOH A 41 741 33 HOH HOH . 
E 5 HOH A 42 742 34 HOH HOH . 
E 5 HOH A 43 743 36 HOH HOH . 
E 5 HOH A 44 744 140 HOH HOH . 
E 5 HOH A 45 745 9 HOH HOH . 
E 5 HOH A 46 746 37 HOH HOH . 
E 5 HOH A 47 747 115 HOH HOH . 
E 5 HOH A 48 748 107 HOH HOH . 
E 5 HOH A 49 749 133 HOH HOH . 
E 5 HOH A 50 750 145 HOH HOH . 
E 5 HOH A 51 751 5 HOH HOH . 
E 5 HOH A 52 752 134 HOH HOH . 
E 5 HOH A 53 753 31 HOH HOH . 
E 5 HOH A 54 754 58 HOH HOH . 
E 5 HOH A 55 755 30 HOH HOH . 
E 5 HOH A 56 756 146 HOH HOH . 
E 5 HOH A 57 757 35 HOH HOH . 
E 5 HOH A 58 758 1 HOH HOH . 
E 5 HOH A 59 759 65 HOH HOH . 
E 5 HOH A 60 760 103 HOH HOH . 
E 5 HOH A 61 761 66 HOH HOH . 
E 5 HOH A 62 762 90 HOH HOH . 
E 5 HOH A 63 763 67 HOH HOH . 
E 5 HOH A 64 764 68 HOH HOH . 
E 5 HOH A 65 765 63 HOH HOH . 
E 5 HOH A 66 766 87 HOH HOH . 
E 5 HOH A 67 767 77 HOH HOH . 
E 5 HOH A 68 768 28 HOH HOH . 
E 5 HOH A 69 769 7 HOH HOH . 
E 5 HOH A 70 770 136 HOH HOH . 
E 5 HOH A 71 771 40 HOH HOH . 
E 5 HOH A 72 772 24 HOH HOH . 
E 5 HOH A 73 773 55 HOH HOH . 
E 5 HOH A 74 774 17 HOH HOH . 
E 5 HOH A 75 775 23 HOH HOH . 
E 5 HOH A 76 776 38 HOH HOH . 
E 5 HOH A 77 777 59 HOH HOH . 
E 5 HOH A 78 778 41 HOH HOH . 
E 5 HOH A 79 779 110 HOH HOH . 
E 5 HOH A 80 780 29 HOH HOH . 
E 5 HOH A 81 781 88 HOH HOH . 
E 5 HOH A 82 782 70 HOH HOH . 
E 5 HOH A 83 783 32 HOH HOH . 
E 5 HOH A 84 784 102 HOH HOH . 
E 5 HOH A 85 785 99 HOH HOH . 
E 5 HOH A 86 786 75 HOH HOH . 
E 5 HOH A 87 787 105 HOH HOH . 
E 5 HOH A 88 788 144 HOH HOH . 
E 5 HOH A 89 789 120 HOH HOH . 
E 5 HOH A 90 790 60 HOH HOH . 
E 5 HOH A 91 791 79 HOH HOH . 
E 5 HOH A 92 792 126 HOH HOH . 
E 5 HOH A 93 793 131 HOH HOH . 
F 5 HOH B 1 101 98 HOH HOH . 
F 5 HOH B 2 102 73 HOH HOH . 
F 5 HOH B 3 103 56 HOH HOH . 
F 5 HOH B 4 104 45 HOH HOH . 
F 5 HOH B 5 105 138 HOH HOH . 
F 5 HOH B 6 106 111 HOH HOH . 
F 5 HOH B 7 107 57 HOH HOH . 
F 5 HOH B 8 108 80 HOH HOH . 
F 5 HOH B 9 109 27 HOH HOH . 
F 5 HOH B 10 110 121 HOH HOH . 
F 5 HOH B 11 111 78 HOH HOH . 
F 5 HOH B 12 112 101 HOH HOH . 
F 5 HOH B 13 113 21 HOH HOH . 
F 5 HOH B 14 114 83 HOH HOH . 
F 5 HOH B 15 115 18 HOH HOH . 
F 5 HOH B 16 116 130 HOH HOH . 
F 5 HOH B 17 117 46 HOH HOH . 
F 5 HOH B 18 118 19 HOH HOH . 
F 5 HOH B 19 119 104 HOH HOH . 
F 5 HOH B 20 120 20 HOH HOH . 
F 5 HOH B 21 121 50 HOH HOH . 
F 5 HOH B 22 122 16 HOH HOH . 
F 5 HOH B 23 123 106 HOH HOH . 
G 5 HOH C 1 101 22 HOH HOH . 
G 5 HOH C 2 102 62 HOH HOH . 
G 5 HOH C 3 103 74 HOH HOH . 
G 5 HOH C 4 104 113 HOH HOH . 
G 5 HOH C 5 105 54 HOH HOH . 
G 5 HOH C 6 106 12 HOH HOH . 
G 5 HOH C 7 107 72 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               59.777 
_atom_site.Cartn_y               56.29 
_atom_site.Cartn_z               -9.544 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        67.07 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              91 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#