data_5GVR # _model_server_result.job_id OzBdHkeTbLqX9WTa69MsUQ _model_server_result.datetime_utc '2024-12-26 11:14:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5GVR # _exptl.entry_id 5GVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-hydroxybutanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GVR _cell.length_a 81.83 _cell.length_b 81.83 _cell.length_c 69.57 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id LMR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-hydroxybutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms L-Malate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A LMR doub 194 n n C1 O1B LMR sing 195 n n C1 C2 LMR sing 196 n n C2 O2 LMR sing 197 n n C2 C3 LMR sing 198 n n C3 C4 LMR sing 199 n n C4 O4A LMR sing 200 n n C4 O4B LMR doub 201 n n C2 H2 LMR sing 202 n n O2 HO2 LMR sing 203 n n C3 H3 LMR sing 204 n n C3 H3A LMR sing 205 n n O1B H4 LMR sing 206 n n O4A H5 LMR sing 207 n n # _atom_sites.entry_id 5GVR _atom_sites.fract_transf_matrix[1][1] 0.01222 _atom_sites.fract_transf_matrix[1][2] 0.007055 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LMR A 1 601 601 LMR LMR . C 3 HOH A 1 701 52 HOH HOH . C 3 HOH A 2 702 76 HOH HOH . C 3 HOH A 3 703 111 HOH HOH . C 3 HOH A 4 704 63 HOH HOH . C 3 HOH A 5 705 127 HOH HOH . C 3 HOH A 6 706 5 HOH HOH . C 3 HOH A 7 707 42 HOH HOH . C 3 HOH A 8 708 64 HOH HOH . C 3 HOH A 9 709 119 HOH HOH . C 3 HOH A 10 710 7 HOH HOH . C 3 HOH A 11 711 4 HOH HOH . C 3 HOH A 12 712 17 HOH HOH . C 3 HOH A 13 713 25 HOH HOH . C 3 HOH A 14 714 9 HOH HOH . C 3 HOH A 15 715 37 HOH HOH . C 3 HOH A 16 716 29 HOH HOH . C 3 HOH A 17 717 8 HOH HOH . C 3 HOH A 18 718 16 HOH HOH . C 3 HOH A 19 719 62 HOH HOH . C 3 HOH A 20 720 65 HOH HOH . C 3 HOH A 21 721 108 HOH HOH . C 3 HOH A 22 722 6 HOH HOH . C 3 HOH A 23 723 116 HOH HOH . C 3 HOH A 24 724 11 HOH HOH . C 3 HOH A 25 725 8 HOH HOH . C 3 HOH A 26 726 14 HOH HOH . C 3 HOH A 27 727 60 HOH HOH . C 3 HOH A 28 728 24 HOH HOH . C 3 HOH A 29 729 92 HOH HOH . C 3 HOH A 30 730 97 HOH HOH . C 3 HOH A 31 731 12 HOH HOH . C 3 HOH A 32 732 58 HOH HOH . C 3 HOH A 33 733 80 HOH HOH . C 3 HOH A 34 734 22 HOH HOH . C 3 HOH A 35 735 61 HOH HOH . C 3 HOH A 36 736 44 HOH HOH . C 3 HOH A 37 737 82 HOH HOH . C 3 HOH A 38 738 45 HOH HOH . C 3 HOH A 39 739 10 HOH HOH . C 3 HOH A 40 740 86 HOH HOH . C 3 HOH A 41 741 124 HOH HOH . C 3 HOH A 42 742 21 HOH HOH . C 3 HOH A 43 743 34 HOH HOH . C 3 HOH A 44 744 26 HOH HOH . C 3 HOH A 45 745 31 HOH HOH . C 3 HOH A 46 746 128 HOH HOH . C 3 HOH A 47 747 102 HOH HOH . C 3 HOH A 48 748 59 HOH HOH . C 3 HOH A 49 749 23 HOH HOH . C 3 HOH A 50 750 20 HOH HOH . C 3 HOH A 51 751 30 HOH HOH . C 3 HOH A 52 752 129 HOH HOH . C 3 HOH A 53 753 14 HOH HOH . C 3 HOH A 54 754 15 HOH HOH . C 3 HOH A 55 755 27 HOH HOH . C 3 HOH A 56 756 114 HOH HOH . C 3 HOH A 57 757 54 HOH HOH . C 3 HOH A 58 758 8 HOH HOH . C 3 HOH A 59 759 72 HOH HOH . C 3 HOH A 60 760 2 HOH HOH . C 3 HOH A 61 761 28 HOH HOH . C 3 HOH A 62 762 107 HOH HOH . C 3 HOH A 63 763 41 HOH HOH . C 3 HOH A 64 764 40 HOH HOH . C 3 HOH A 65 765 105 HOH HOH . C 3 HOH A 66 766 9 HOH HOH . C 3 HOH A 67 767 18 HOH HOH . C 3 HOH A 68 768 91 HOH HOH . C 3 HOH A 69 769 13 HOH HOH . C 3 HOH A 70 770 85 HOH HOH . C 3 HOH A 71 771 36 HOH HOH . C 3 HOH A 72 772 75 HOH HOH . C 3 HOH A 73 773 33 HOH HOH . C 3 HOH A 74 774 1 HOH HOH . C 3 HOH A 75 775 100 HOH HOH . C 3 HOH A 76 776 3 HOH HOH . C 3 HOH A 77 777 32 HOH HOH . C 3 HOH A 78 778 19 HOH HOH . C 3 HOH A 79 779 53 HOH HOH . C 3 HOH A 80 780 50 HOH HOH . C 3 HOH A 81 781 48 HOH HOH . C 3 HOH A 82 782 55 HOH HOH . C 3 HOH A 83 783 118 HOH HOH . C 3 HOH A 84 784 74 HOH HOH . C 3 HOH A 85 785 101 HOH HOH . C 3 HOH A 86 786 120 HOH HOH . C 3 HOH A 87 787 104 HOH HOH . C 3 HOH A 88 788 57 HOH HOH . C 3 HOH A 89 789 103 HOH HOH . C 3 HOH A 90 790 4 HOH HOH . C 3 HOH A 91 791 35 HOH HOH . C 3 HOH A 92 792 83 HOH HOH . C 3 HOH A 93 793 84 HOH HOH . C 3 HOH A 94 794 70 HOH HOH . C 3 HOH A 95 795 46 HOH HOH . C 3 HOH A 96 796 13 HOH HOH . C 3 HOH A 97 797 67 HOH HOH . C 3 HOH A 98 798 73 HOH HOH . C 3 HOH A 99 799 69 HOH HOH . C 3 HOH A 100 800 3 HOH HOH . C 3 HOH A 101 801 95 HOH HOH . C 3 HOH A 102 802 51 HOH HOH . C 3 HOH A 103 803 96 HOH HOH . C 3 HOH A 104 804 71 HOH HOH . C 3 HOH A 105 805 79 HOH HOH . C 3 HOH A 106 806 38 HOH HOH . C 3 HOH A 107 807 78 HOH HOH . C 3 HOH A 108 808 113 HOH HOH . C 3 HOH A 109 809 109 HOH HOH . C 3 HOH A 110 810 49 HOH HOH . C 3 HOH A 111 811 53 HOH HOH . C 3 HOH A 112 812 39 HOH HOH . C 3 HOH A 113 813 120 HOH HOH . C 3 HOH A 114 814 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMR . . . B 2 12.276 -24.325 -2.202 1 46.68 ? C1 LMR 601 A 1 HETATM 2 O O1A LMR . . . B 2 12.423 -24.707 -3.367 1 41.02 ? O1A LMR 601 A 1 HETATM 3 O O1B LMR . . . B 2 11.11 -24.41 -1.794 1 36.07 ? O1B LMR 601 A 1 HETATM 4 C C2 LMR . . . B 2 13.438 -23.799 -1.339 1 45.75 ? C2 LMR 601 A 1 HETATM 5 O O2 LMR . . . B 2 13.035 -23.735 -0.011 1 44.41 ? O2 LMR 601 A 1 HETATM 6 C C3 LMR . . . B 2 14.618 -24.737 -1.267 1 36.46 ? C3 LMR 601 A 1 HETATM 7 C C4 LMR . . . B 2 15.363 -24.873 0.064 1 21.01 ? C4 LMR 601 A 1 HETATM 8 O O4A LMR . . . B 2 15.298 -25.904 0.753 1 25.24 ? O4A LMR 601 A 1 HETATM 9 O O4B LMR . . . B 2 16.022 -23.871 0.417 1 26.61 ? O4B LMR 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #