data_5GWD # _model_server_result.job_id -rEBhGirKaSuO8sJ97Or3A _model_server_result.datetime_utc '2025-03-25 13:12:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gwd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5GWD # _exptl.entry_id 5GWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.41 _cell.angle_gamma 90 _cell.entry_id 5GWD _cell.length_a 72.223 _cell.length_b 35.486 _cell.length_c 93.757 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 25 A ALA 25 1_555 A N MLY 26 A MLY 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MLY 26 A MLY 26 1_555 A N VAL 27 A VAL 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A SG CYS 28 A CYS 28 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? covale ? covale3 A C THR 46 A THR 46 1_555 A N MLY 47 A MLY 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MLY 47 A MLY 47 1_555 A N TRP 48 A TRP 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C VAL 69 A VAL 69 1_555 A N MLY 70 A MLY 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MLY 70 A MLY 70 1_555 A N GLN 71 A GLN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc2 A NE2 HIS 142 A HIS 142 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 A NE2 HIS 146 A HIS 146 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 A NE2 HIS 152 A HIS 152 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? covale ? covale7 A C SER 180 A SER 180 1_555 A N MLY 181 A MLY 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MLY 181 A MLY 181 1_555 A N LYS 182 A LYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C ASP 233 A ASP 233 1_555 A N MLY 234 A MLY 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MLY 234 A MLY 234 1_555 A N GLN 235 A GLN 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 B C ALA 25 B ALA 25 1_555 B N MLY 26 B MLY 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 B C MLY 26 B MLY 26 1_555 B N VAL 27 B VAL 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc5 B SG CYS 28 B CYS 28 1_555 D ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? covale ? covale13 B C THR 46 B THR 46 1_555 B N MLY 47 B MLY 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C MLY 47 B MLY 47 1_555 B N TRP 48 B TRP 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 B C VAL 69 B VAL 69 1_555 B N MLY 70 B MLY 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 B C MLY 70 B MLY 70 1_555 B N GLN 71 B GLN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc6 B NE2 HIS 142 B HIS 142 1_555 D ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 B NE2 HIS 146 B HIS 146 1_555 D ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc8 B NE2 HIS 152 B HIS 152 1_555 D ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? covale ? covale17 B C SER 180 B SER 180 1_555 B N MLY 181 B MLY 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 B C MLY 181 B MLY 181 1_555 B N LYS 182 B LYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C ASP 233 B ASP 233 1_555 B N MLY 234 B MLY 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale20 B C MLY 234 B MLY 234 1_555 B N GLN 235 B GLN 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GWD _atom_sites.fract_transf_matrix[1][1] 0.013846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002793 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 301 ZN ZN . D 2 ZN B 1 301 301 ZN ZN . E 3 HOH A 1 401 401 HOH HOH . E 3 HOH A 2 402 402 HOH HOH . E 3 HOH A 3 403 403 HOH HOH . E 3 HOH A 4 404 404 HOH HOH . E 3 HOH A 5 405 405 HOH HOH . E 3 HOH A 6 406 406 HOH HOH . E 3 HOH A 7 407 407 HOH HOH . E 3 HOH A 8 408 408 HOH HOH . E 3 HOH A 9 409 409 HOH HOH . E 3 HOH A 10 410 410 HOH HOH . E 3 HOH A 11 411 411 HOH HOH . E 3 HOH A 12 412 412 HOH HOH . E 3 HOH A 13 413 413 HOH HOH . E 3 HOH A 14 414 414 HOH HOH . E 3 HOH A 15 415 415 HOH HOH . E 3 HOH A 16 416 416 HOH HOH . E 3 HOH A 17 417 417 HOH HOH . E 3 HOH A 18 418 418 HOH HOH . E 3 HOH A 19 419 419 HOH HOH . E 3 HOH A 20 420 420 HOH HOH . E 3 HOH A 21 421 421 HOH HOH . E 3 HOH A 22 422 422 HOH HOH . E 3 HOH A 23 423 423 HOH HOH . E 3 HOH A 24 424 424 HOH HOH . E 3 HOH A 25 425 425 HOH HOH . E 3 HOH A 26 426 426 HOH HOH . E 3 HOH A 27 427 427 HOH HOH . E 3 HOH A 28 428 428 HOH HOH . E 3 HOH A 29 429 429 HOH HOH . E 3 HOH A 30 430 430 HOH HOH . E 3 HOH A 31 431 431 HOH HOH . E 3 HOH A 32 432 432 HOH HOH . E 3 HOH A 33 433 433 HOH HOH . E 3 HOH A 34 434 434 HOH HOH . E 3 HOH A 35 435 435 HOH HOH . E 3 HOH A 36 436 436 HOH HOH . E 3 HOH A 37 437 437 HOH HOH . E 3 HOH A 38 438 438 HOH HOH . E 3 HOH A 39 439 439 HOH HOH . E 3 HOH A 40 440 440 HOH HOH . E 3 HOH A 41 441 441 HOH HOH . E 3 HOH A 42 442 442 HOH HOH . E 3 HOH A 43 443 443 HOH HOH . E 3 HOH A 44 444 444 HOH HOH . E 3 HOH A 45 445 445 HOH HOH . E 3 HOH A 46 446 446 HOH HOH . E 3 HOH A 47 447 447 HOH HOH . E 3 HOH A 48 448 448 HOH HOH . E 3 HOH A 49 449 449 HOH HOH . E 3 HOH A 50 450 450 HOH HOH . E 3 HOH A 51 451 451 HOH HOH . E 3 HOH A 52 452 452 HOH HOH . E 3 HOH A 53 453 453 HOH HOH . E 3 HOH A 54 454 454 HOH HOH . E 3 HOH A 55 455 455 HOH HOH . E 3 HOH A 56 456 456 HOH HOH . E 3 HOH A 57 457 457 HOH HOH . E 3 HOH A 58 458 458 HOH HOH . E 3 HOH A 59 459 459 HOH HOH . E 3 HOH A 60 460 460 HOH HOH . E 3 HOH A 61 461 461 HOH HOH . E 3 HOH A 62 462 462 HOH HOH . E 3 HOH A 63 463 463 HOH HOH . E 3 HOH A 64 464 464 HOH HOH . E 3 HOH A 65 465 465 HOH HOH . E 3 HOH A 66 466 466 HOH HOH . E 3 HOH A 67 467 467 HOH HOH . E 3 HOH A 68 468 468 HOH HOH . E 3 HOH A 69 469 469 HOH HOH . E 3 HOH A 70 470 471 HOH HOH . E 3 HOH A 71 471 470 HOH HOH . E 3 HOH A 72 472 472 HOH HOH . E 3 HOH A 73 473 473 HOH HOH . E 3 HOH A 74 474 474 HOH HOH . E 3 HOH A 75 475 475 HOH HOH . E 3 HOH A 76 476 476 HOH HOH . E 3 HOH A 77 477 477 HOH HOH . E 3 HOH A 78 478 478 HOH HOH . E 3 HOH A 79 479 479 HOH HOH . E 3 HOH A 80 480 480 HOH HOH . E 3 HOH A 81 481 481 HOH HOH . E 3 HOH A 82 482 482 HOH HOH . E 3 HOH A 83 483 483 HOH HOH . E 3 HOH A 84 484 484 HOH HOH . E 3 HOH A 85 485 485 HOH HOH . E 3 HOH A 86 486 486 HOH HOH . E 3 HOH A 87 487 487 HOH HOH . E 3 HOH A 88 488 488 HOH HOH . E 3 HOH A 89 489 489 HOH HOH . E 3 HOH A 90 490 490 HOH HOH . E 3 HOH A 91 491 491 HOH HOH . E 3 HOH A 92 492 492 HOH HOH . E 3 HOH A 93 493 493 HOH HOH . E 3 HOH A 94 494 494 HOH HOH . E 3 HOH A 95 495 495 HOH HOH . E 3 HOH A 96 496 497 HOH HOH . E 3 HOH A 97 497 498 HOH HOH . E 3 HOH A 98 498 499 HOH HOH . E 3 HOH A 99 499 500 HOH HOH . E 3 HOH A 100 500 501 HOH HOH . E 3 HOH A 101 501 502 HOH HOH . E 3 HOH A 102 502 503 HOH HOH . E 3 HOH A 103 503 504 HOH HOH . E 3 HOH A 104 504 505 HOH HOH . E 3 HOH A 105 505 506 HOH HOH . E 3 HOH A 106 506 507 HOH HOH . E 3 HOH A 107 507 508 HOH HOH . E 3 HOH A 108 508 509 HOH HOH . E 3 HOH A 109 509 510 HOH HOH . F 3 HOH B 1 401 401 HOH HOH . F 3 HOH B 2 402 402 HOH HOH . F 3 HOH B 3 403 403 HOH HOH . F 3 HOH B 4 404 404 HOH HOH . F 3 HOH B 5 405 405 HOH HOH . F 3 HOH B 6 406 406 HOH HOH . F 3 HOH B 7 407 407 HOH HOH . F 3 HOH B 8 408 408 HOH HOH . F 3 HOH B 9 409 409 HOH HOH . F 3 HOH B 10 410 410 HOH HOH . F 3 HOH B 11 411 411 HOH HOH . F 3 HOH B 12 412 412 HOH HOH . F 3 HOH B 13 413 413 HOH HOH . F 3 HOH B 14 414 414 HOH HOH . F 3 HOH B 15 415 415 HOH HOH . F 3 HOH B 16 416 416 HOH HOH . F 3 HOH B 17 417 417 HOH HOH . F 3 HOH B 18 418 418 HOH HOH . F 3 HOH B 19 419 419 HOH HOH . F 3 HOH B 20 420 420 HOH HOH . F 3 HOH B 21 421 421 HOH HOH . F 3 HOH B 22 422 422 HOH HOH . F 3 HOH B 23 423 423 HOH HOH . F 3 HOH B 24 424 424 HOH HOH . F 3 HOH B 25 425 425 HOH HOH . F 3 HOH B 26 426 426 HOH HOH . F 3 HOH B 27 427 427 HOH HOH . F 3 HOH B 28 428 428 HOH HOH . F 3 HOH B 29 429 429 HOH HOH . F 3 HOH B 30 430 430 HOH HOH . F 3 HOH B 31 431 431 HOH HOH . F 3 HOH B 32 432 432 HOH HOH . F 3 HOH B 33 433 433 HOH HOH . F 3 HOH B 34 434 434 HOH HOH . F 3 HOH B 35 435 435 HOH HOH . F 3 HOH B 36 436 436 HOH HOH . F 3 HOH B 37 437 437 HOH HOH . F 3 HOH B 38 438 438 HOH HOH . F 3 HOH B 39 439 439 HOH HOH . F 3 HOH B 40 440 440 HOH HOH . F 3 HOH B 41 441 441 HOH HOH . F 3 HOH B 42 442 442 HOH HOH . F 3 HOH B 43 443 443 HOH HOH . F 3 HOH B 44 444 444 HOH HOH . F 3 HOH B 45 445 445 HOH HOH . F 3 HOH B 46 446 446 HOH HOH . F 3 HOH B 47 447 447 HOH HOH . F 3 HOH B 48 448 448 HOH HOH . F 3 HOH B 49 449 449 HOH HOH . F 3 HOH B 50 450 450 HOH HOH . F 3 HOH B 51 451 451 HOH HOH . F 3 HOH B 52 452 452 HOH HOH . F 3 HOH B 53 453 453 HOH HOH . F 3 HOH B 54 454 454 HOH HOH . F 3 HOH B 55 455 455 HOH HOH . F 3 HOH B 56 456 456 HOH HOH . F 3 HOH B 57 457 457 HOH HOH . F 3 HOH B 58 458 458 HOH HOH . F 3 HOH B 59 459 459 HOH HOH . F 3 HOH B 60 460 460 HOH HOH . F 3 HOH B 61 461 461 HOH HOH . F 3 HOH B 62 462 462 HOH HOH . F 3 HOH B 63 463 463 HOH HOH . F 3 HOH B 64 464 464 HOH HOH . F 3 HOH B 65 465 465 HOH HOH . F 3 HOH B 66 466 466 HOH HOH . F 3 HOH B 67 467 467 HOH HOH . F 3 HOH B 68 468 468 HOH HOH . F 3 HOH B 69 469 469 HOH HOH . F 3 HOH B 70 470 470 HOH HOH . F 3 HOH B 71 471 471 HOH HOH . F 3 HOH B 72 472 472 HOH HOH . F 3 HOH B 73 473 473 HOH HOH . F 3 HOH B 74 474 474 HOH HOH . F 3 HOH B 75 475 475 HOH HOH . F 3 HOH B 76 476 476 HOH HOH . F 3 HOH B 77 477 477 HOH HOH . F 3 HOH B 78 478 478 HOH HOH . F 3 HOH B 79 479 479 HOH HOH . F 3 HOH B 80 480 480 HOH HOH . F 3 HOH B 81 481 481 HOH HOH . F 3 HOH B 82 482 482 HOH HOH . F 3 HOH B 83 483 483 HOH HOH . F 3 HOH B 84 484 484 HOH HOH . F 3 HOH B 85 485 485 HOH HOH . F 3 HOH B 86 486 486 HOH HOH . F 3 HOH B 87 487 487 HOH HOH . F 3 HOH B 88 488 488 HOH HOH . F 3 HOH B 89 489 489 HOH HOH . F 3 HOH B 90 490 490 HOH HOH . F 3 HOH B 91 491 491 HOH HOH . F 3 HOH B 92 492 492 HOH HOH . F 3 HOH B 93 493 493 HOH HOH . F 3 HOH B 94 494 494 HOH HOH . F 3 HOH B 95 495 495 HOH HOH . F 3 HOH B 96 496 496 HOH HOH . F 3 HOH B 97 497 497 HOH HOH . F 3 HOH B 98 498 498 HOH HOH . F 3 HOH B 99 499 499 HOH HOH . F 3 HOH B 100 500 500 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.971 _atom_site.Cartn_y -6.65 _atom_site.Cartn_z 25.737 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #