data_5GWX # _model_server_result.job_id ISijdRqZ0HJzruhqBXpBsQ _model_server_result.datetime_utc '2024-12-01 20:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gwx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5GWX # _exptl.entry_id 5GWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GWX _cell.length_a 51.733 _cell.length_b 120.71 _cell.length_c 130.922 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5GWX _atom_sites.fract_transf_matrix[1][1] 0.01933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 301 1 SAM SAM . C 3 SAR A 1 302 1 SAR SAR . D 4 EDO A 1 303 1 EDO EDO . E 4 EDO A 1 304 2 EDO EDO . F 4 EDO A 1 305 3 EDO EDO . G 4 EDO A 1 306 4 EDO EDO . H 5 HOH A 1 401 8 HOH HOH . H 5 HOH A 2 402 44 HOH HOH . H 5 HOH A 3 403 39 HOH HOH . H 5 HOH A 4 404 72 HOH HOH . H 5 HOH A 5 405 66 HOH HOH . H 5 HOH A 6 406 55 HOH HOH . H 5 HOH A 7 407 22 HOH HOH . H 5 HOH A 8 408 37 HOH HOH . H 5 HOH A 9 409 9 HOH HOH . H 5 HOH A 10 410 30 HOH HOH . H 5 HOH A 11 411 23 HOH HOH . H 5 HOH A 12 412 2 HOH HOH . H 5 HOH A 13 413 19 HOH HOH . H 5 HOH A 14 414 20 HOH HOH . H 5 HOH A 15 415 89 HOH HOH . H 5 HOH A 16 416 25 HOH HOH . H 5 HOH A 17 417 6 HOH HOH . H 5 HOH A 18 418 69 HOH HOH . H 5 HOH A 19 419 12 HOH HOH . H 5 HOH A 20 420 14 HOH HOH . H 5 HOH A 21 421 50 HOH HOH . H 5 HOH A 22 422 86 HOH HOH . H 5 HOH A 23 423 42 HOH HOH . H 5 HOH A 24 424 45 HOH HOH . H 5 HOH A 25 425 13 HOH HOH . H 5 HOH A 26 426 15 HOH HOH . H 5 HOH A 27 427 4 HOH HOH . H 5 HOH A 28 428 11 HOH HOH . H 5 HOH A 29 429 18 HOH HOH . H 5 HOH A 30 430 5 HOH HOH . H 5 HOH A 31 431 38 HOH HOH . H 5 HOH A 32 432 54 HOH HOH . H 5 HOH A 33 433 41 HOH HOH . H 5 HOH A 34 434 1 HOH HOH . H 5 HOH A 35 435 33 HOH HOH . H 5 HOH A 36 436 28 HOH HOH . H 5 HOH A 37 437 24 HOH HOH . H 5 HOH A 38 438 78 HOH HOH . H 5 HOH A 39 439 3 HOH HOH . H 5 HOH A 40 440 40 HOH HOH . H 5 HOH A 41 441 68 HOH HOH . H 5 HOH A 42 442 76 HOH HOH . H 5 HOH A 43 443 81 HOH HOH . H 5 HOH A 44 444 10 HOH HOH . H 5 HOH A 45 445 7 HOH HOH . H 5 HOH A 46 446 31 HOH HOH . H 5 HOH A 47 447 16 HOH HOH . H 5 HOH A 48 448 26 HOH HOH . H 5 HOH A 49 449 34 HOH HOH . H 5 HOH A 50 450 58 HOH HOH . H 5 HOH A 51 451 67 HOH HOH . H 5 HOH A 52 452 29 HOH HOH . H 5 HOH A 53 453 91 HOH HOH . H 5 HOH A 54 454 60 HOH HOH . H 5 HOH A 55 455 87 HOH HOH . H 5 HOH A 56 456 94 HOH HOH . H 5 HOH A 57 457 51 HOH HOH . H 5 HOH A 58 458 27 HOH HOH . H 5 HOH A 59 459 84 HOH HOH . H 5 HOH A 60 460 43 HOH HOH . H 5 HOH A 61 461 75 HOH HOH . H 5 HOH A 62 462 21 HOH HOH . H 5 HOH A 63 463 36 HOH HOH . H 5 HOH A 64 464 35 HOH HOH . H 5 HOH A 65 465 17 HOH HOH . H 5 HOH A 66 466 56 HOH HOH . H 5 HOH A 67 467 65 HOH HOH . H 5 HOH A 68 468 57 HOH HOH . H 5 HOH A 69 469 46 HOH HOH . H 5 HOH A 70 470 59 HOH HOH . H 5 HOH A 71 471 80 HOH HOH . H 5 HOH A 72 472 70 HOH HOH . H 5 HOH A 73 473 82 HOH HOH . H 5 HOH A 74 474 88 HOH HOH . H 5 HOH A 75 475 83 HOH HOH . H 5 HOH A 76 476 61 HOH HOH . H 5 HOH A 77 477 63 HOH HOH . H 5 HOH A 78 478 92 HOH HOH . H 5 HOH A 79 479 97 HOH HOH . H 5 HOH A 80 480 52 HOH HOH . H 5 HOH A 81 481 53 HOH HOH . H 5 HOH A 82 482 74 HOH HOH . H 5 HOH A 83 483 62 HOH HOH . H 5 HOH A 84 484 85 HOH HOH . H 5 HOH A 85 485 48 HOH HOH . H 5 HOH A 86 486 64 HOH HOH . H 5 HOH A 87 487 73 HOH HOH . H 5 HOH A 88 488 71 HOH HOH . H 5 HOH A 89 489 32 HOH HOH . H 5 HOH A 90 490 77 HOH HOH . H 5 HOH A 91 491 79 HOH HOH . H 5 HOH A 92 492 93 HOH HOH . H 5 HOH A 93 493 90 HOH HOH . H 5 HOH A 94 494 47 HOH HOH . H 5 HOH A 95 495 95 HOH HOH . H 5 HOH A 96 496 96 HOH HOH . H 5 HOH A 97 497 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -14.457 -8.225 -29.143 1 56.08 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . G 4 -15.445 -7.45 -29.711 1 66.7 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . G 4 -15.081 -9.468 -28.615 1 53.31 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . G 4 -15.79 -9.171 -27.469 1 54.22 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #