data_5GX9 # _model_server_result.job_id hO0F59azDUsl7dkVMIKnsQ _model_server_result.datetime_utc '2025-08-31 18:01:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5GX9 # _exptl.entry_id 5GX9 _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 164.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-HYDROXYCINNAMIC ACID" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GX9 _cell.length_a 66.823 _cell.length_b 66.823 _cell.length_c 40.982 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 69 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id HC4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HC4 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.777 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H8 O3' _chem_comp.formula_weight 164.158 _chem_comp.id HC4 _chem_comp.mon_nstd_flag . _chem_comp.name "4'-HYDROXYCINNAMIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PARA-COUMARIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HC4 doub 131 n n C1 O2 HC4 sing 132 n n C1 C2 HC4 sing 133 n n O2 HO2 HC4 sing 134 n n C2 C3 HC4 doub 135 e n C2 H2 HC4 sing 136 n n C3 C1' HC4 sing 137 n n C3 H3 HC4 sing 138 n n C1' C2' HC4 doub 139 n y C1' C6' HC4 sing 140 n y C2' C3' HC4 sing 141 n y C2' H2' HC4 sing 142 n n C3' C4' HC4 doub 143 n y C3' H3' HC4 sing 144 n n C4' C5' HC4 sing 145 n y C4' O4' HC4 sing 146 n n C5' C6' HC4 doub 147 n y C5' H5' HC4 sing 148 n n C6' H6' HC4 sing 149 n n O4' HO4' HC4 sing 150 n n # _atom_sites.entry_id 5GX9 _atom_sites.fract_transf_matrix[1][1] 0.014965 _atom_sites.fract_transf_matrix[1][2] 0.00864 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HC4 A 1 201 169 HC4 HC4 . C 3 DOD A 1 301 1005 DOD DOD . C 3 DOD A 2 302 1079 DOD DOD . C 3 DOD A 3 303 1080 DOD DOD . C 3 DOD A 4 304 1016 DOD DOD . C 3 DOD A 5 305 1001 DOD DOD . C 3 DOD A 6 306 1024 DOD DOD . C 3 DOD A 7 307 1078 DOD DOD . C 3 DOD A 8 308 1075 DOD DOD . C 3 DOD A 9 309 1014 DOD DOD . C 3 DOD A 10 310 1002 DOD DOD . C 3 DOD A 11 311 1010 DOD DOD . C 3 DOD A 12 312 1021 DOD DOD . C 3 DOD A 13 313 1008 DOD DOD . C 3 DOD A 14 314 1076 DOD DOD . C 3 DOD A 15 315 1036 DOD DOD . C 3 DOD A 16 316 1007 DOD DOD . C 3 DOD A 17 317 1054 DOD DOD . C 3 DOD A 18 318 1025 DOD DOD . C 3 DOD A 19 319 1015 DOD DOD . C 3 DOD A 20 320 1027 DOD DOD . C 3 DOD A 21 321 1064 DOD DOD . C 3 DOD A 22 322 1023 DOD DOD . C 3 DOD A 23 323 1032 DOD DOD . C 3 DOD A 24 324 1022 DOD DOD . C 3 DOD A 25 325 1031 DOD DOD . C 3 DOD A 26 326 1030 DOD DOD . C 3 DOD A 27 327 1012 DOD DOD . C 3 DOD A 28 328 1011 DOD DOD . C 3 DOD A 29 329 1020 DOD DOD . C 3 DOD A 30 330 1028 DOD DOD . C 3 DOD A 31 331 1003 DOD DOD . C 3 DOD A 32 332 1019 DOD DOD . C 3 DOD A 33 333 1035 DOD DOD . C 3 DOD A 34 334 1042 DOD DOD . C 3 DOD A 35 335 1013 DOD DOD . C 3 DOD A 36 336 1074 DOD DOD . C 3 DOD A 37 337 1038 DOD DOD . C 3 DOD A 38 338 1037 DOD DOD . C 3 DOD A 39 339 1017 DOD DOD . C 3 DOD A 40 340 1039 DOD DOD . C 3 DOD A 41 341 1046 DOD DOD . C 3 DOD A 42 342 1077 DOD DOD . C 3 DOD A 43 343 1026 DOD DOD . C 3 DOD A 44 344 1033 DOD DOD . C 3 DOD A 45 345 1048 DOD DOD . C 3 DOD A 46 346 1047 DOD DOD . C 3 DOD A 47 347 1029 DOD DOD . C 3 DOD A 48 348 1045 DOD DOD . C 3 DOD A 49 349 1044 DOD DOD . C 3 DOD A 50 350 1073 DOD DOD . C 3 DOD A 51 351 1059 DOD DOD . C 3 DOD A 52 352 1040 DOD DOD . C 3 DOD A 53 353 1043 DOD DOD . C 3 DOD A 54 354 1018 DOD DOD . C 3 DOD A 55 355 1009 DOD DOD . C 3 DOD A 56 356 1056 DOD DOD . C 3 DOD A 57 357 1050 DOD DOD . C 3 DOD A 58 358 1051 DOD DOD . C 3 DOD A 59 359 1061 DOD DOD . C 3 DOD A 60 360 1055 DOD DOD . C 3 DOD A 61 361 1006 DOD DOD . C 3 DOD A 62 362 1057 DOD DOD . C 3 DOD A 63 363 1053 DOD DOD . C 3 DOD A 64 364 1034 DOD DOD . C 3 DOD A 65 365 1041 DOD DOD . C 3 DOD A 66 366 1052 DOD DOD . C 3 DOD A 67 367 1049 DOD DOD . C 3 DOD A 68 368 1058 DOD DOD . C 3 DOD A 69 369 1072 DOD DOD . C 3 DOD A 70 370 1060 DOD DOD . C 3 DOD A 71 371 1063 DOD DOD . C 3 DOD A 72 372 1068 DOD DOD . C 3 DOD A 73 373 1065 DOD DOD . C 3 DOD A 74 374 1066 DOD DOD . C 3 DOD A 75 375 1062 DOD DOD . C 3 DOD A 76 376 1067 DOD DOD . C 3 DOD A 77 377 1069 DOD DOD . C 3 DOD A 78 378 1070 DOD DOD . C 3 DOD A 79 379 1004 DOD DOD . C 3 DOD A 80 380 1071 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HC4 . . . B 2 12.044 -2.973 7.417 1 9.24 ? C1 HC4 201 A 1 HETATM 2 O O1 HC4 . . . B 2 12.135 -3.141 8.595 1 9.06 ? O1 HC4 201 A 1 HETATM 3 C C2 HC4 . . . B 2 12.936 -2.072 6.634 1 8.58 ? C2 HC4 201 A 1 HETATM 4 C C3 HC4 . . . B 2 13.59 -0.988 7.362 1 9.69 ? C3 HC4 201 A 1 HETATM 5 C C1' HC4 . . . B 2 14.748 -0.32 6.714 1 7.33 ? C1' HC4 201 A 1 HETATM 6 C C2' HC4 . . . B 2 15.468 0.462 7.48 1 10.34 ? C2' HC4 201 A 1 HETATM 7 C C3' HC4 . . . B 2 16.647 1.162 6.896 1 10.07 ? C3' HC4 201 A 1 HETATM 8 C C4' HC4 . . . B 2 16.961 0.968 5.647 1 10.24 ? C4' HC4 201 A 1 HETATM 9 C C5' HC4 . . . B 2 16.145 0.074 4.764 1 8.21 ? C5' HC4 201 A 1 HETATM 10 C C6' HC4 . . . B 2 15.099 -0.534 5.269 1 7.69 ? C6' HC4 201 A 1 HETATM 11 O O4' HC4 . . . B 2 18.038 1.583 5.055 1 11.52 ? O4' HC4 201 A 1 HETATM 12 H H2 HC4 . . . B 2 12.903 -2.078 5.521 1 6.11 ? H2 HC4 201 A 1 HETATM 13 H H3 HC4 . . . B 2 13.697 -1.17 8.444 1 5.32 ? H3 HC4 201 A 1 HETATM 14 H H2' HC4 . . . B 2 15.215 0.626 8.522 1 9.2 ? H2' HC4 201 A 1 HETATM 15 H H3' HC4 . . . B 2 17.229 1.801 7.541 1 10.44 ? H3' HC4 201 A 1 HETATM 16 H H5' HC4 . . . B 2 16.427 -0.061 3.724 1 5.45 ? H5' HC4 201 A 1 HETATM 17 H H6' HC4 . . . B 2 14.489 -1.193 4.664 1 18.17 ? H6' HC4 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 598 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #