data_5GXO # _model_server_result.job_id RiW15eCczqkez1X58RWllQ _model_server_result.datetime_utc '2024-10-18 05:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5GXO # _exptl.entry_id 5GXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GXO _cell.length_a 80.12 _cell.length_b 80.12 _cell.length_c 242.87 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 40.06 -69.385955 40.478333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 43 A GLU 67 1_555 A N ALY 44 A ALY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ALY 44 A ALY 68 1_555 A N TYR 45 A TYR 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C GLU 43 B GLU 67 1_555 B N ALY 44 B ALY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale4 B C ALY 44 B ALY 68 1_555 B N TYR 45 B TYR 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 A NE2 HIS 26 A HIS 50 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A NE2 HIS 74 A HIS 98 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc3 A OD2 ASP 159 A ASP 183 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 A NE2 HIS 163 A HIS 187 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc5 C MN MN . A MN 301 1_555 E O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc6 B NE2 HIS 26 B HIS 50 1_555 D MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc7 B NE2 HIS 74 B HIS 98 1_555 D MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc8 B OD2 ASP 159 B ASP 183 1_555 D MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc9 B NE2 HIS 163 B HIS 187 1_555 D MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc10 D MN MN . B MN 301 1_555 F O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GXO _atom_sites.fract_transf_matrix[1][1] 0.012481 _atom_sites.fract_transf_matrix[1][2] 0.007206 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 301 301 MN MN . D 2 MN B 1 301 301 MN MN . E 3 HOH A 1 401 1 HOH HOH . E 3 HOH A 2 402 115 HOH HOH . E 3 HOH A 3 403 29 HOH HOH . E 3 HOH A 4 404 85 HOH HOH . E 3 HOH A 5 405 14 HOH HOH . E 3 HOH A 6 406 7 HOH HOH . E 3 HOH A 7 407 112 HOH HOH . E 3 HOH A 8 408 36 HOH HOH . E 3 HOH A 9 409 10 HOH HOH . E 3 HOH A 10 410 96 HOH HOH . E 3 HOH A 11 411 4 HOH HOH . E 3 HOH A 12 412 75 HOH HOH . E 3 HOH A 13 413 6 HOH HOH . E 3 HOH A 14 414 88 HOH HOH . E 3 HOH A 15 415 102 HOH HOH . E 3 HOH A 16 416 15 HOH HOH . E 3 HOH A 17 417 34 HOH HOH . E 3 HOH A 18 418 84 HOH HOH . E 3 HOH A 19 419 108 HOH HOH . E 3 HOH A 20 420 78 HOH HOH . E 3 HOH A 21 421 8 HOH HOH . E 3 HOH A 22 422 9 HOH HOH . E 3 HOH A 23 423 95 HOH HOH . E 3 HOH A 24 424 68 HOH HOH . E 3 HOH A 25 425 12 HOH HOH . E 3 HOH A 26 426 19 HOH HOH . E 3 HOH A 27 427 33 HOH HOH . E 3 HOH A 28 428 37 HOH HOH . E 3 HOH A 29 429 110 HOH HOH . E 3 HOH A 30 430 70 HOH HOH . E 3 HOH A 31 431 24 HOH HOH . E 3 HOH A 32 432 31 HOH HOH . E 3 HOH A 33 433 35 HOH HOH . E 3 HOH A 34 434 32 HOH HOH . E 3 HOH A 35 435 23 HOH HOH . E 3 HOH A 36 436 94 HOH HOH . E 3 HOH A 37 437 22 HOH HOH . E 3 HOH A 38 438 18 HOH HOH . E 3 HOH A 39 439 100 HOH HOH . E 3 HOH A 40 440 38 HOH HOH . E 3 HOH A 41 441 74 HOH HOH . E 3 HOH A 42 442 2 HOH HOH . E 3 HOH A 43 443 113 HOH HOH . E 3 HOH A 44 444 27 HOH HOH . E 3 HOH A 45 445 16 HOH HOH . E 3 HOH A 46 446 87 HOH HOH . E 3 HOH A 47 447 92 HOH HOH . E 3 HOH A 48 448 98 HOH HOH . E 3 HOH A 49 449 81 HOH HOH . E 3 HOH A 50 450 101 HOH HOH . E 3 HOH A 51 451 72 HOH HOH . E 3 HOH A 52 452 80 HOH HOH . E 3 HOH A 53 453 3 HOH HOH . E 3 HOH A 54 454 109 HOH HOH . E 3 HOH A 55 455 106 HOH HOH . E 3 HOH A 56 456 89 HOH HOH . E 3 HOH A 57 457 17 HOH HOH . E 3 HOH A 58 458 117 HOH HOH . E 3 HOH A 59 459 91 HOH HOH . E 3 HOH A 60 460 104 HOH HOH . E 3 HOH A 61 461 114 HOH HOH . E 3 HOH A 62 462 107 HOH HOH . E 3 HOH A 63 463 77 HOH HOH . E 3 HOH A 64 464 71 HOH HOH . E 3 HOH A 65 465 76 HOH HOH . E 3 HOH A 66 466 21 HOH HOH . E 3 HOH A 67 467 13 HOH HOH . E 3 HOH A 68 468 11 HOH HOH . E 3 HOH A 69 469 26 HOH HOH . E 3 HOH A 70 470 111 HOH HOH . E 3 HOH A 71 471 93 HOH HOH . E 3 HOH A 72 472 86 HOH HOH . E 3 HOH A 73 473 30 HOH HOH . E 3 HOH A 74 474 97 HOH HOH . E 3 HOH A 75 475 20 HOH HOH . E 3 HOH A 76 476 83 HOH HOH . E 3 HOH A 77 477 99 HOH HOH . E 3 HOH A 78 478 82 HOH HOH . E 3 HOH A 79 479 141 HOH HOH . E 3 HOH A 80 480 116 HOH HOH . E 3 HOH A 81 481 105 HOH HOH . F 3 HOH B 1 401 120 HOH HOH . F 3 HOH B 2 402 45 HOH HOH . F 3 HOH B 3 403 134 HOH HOH . F 3 HOH B 4 404 51 HOH HOH . F 3 HOH B 5 405 124 HOH HOH . F 3 HOH B 6 406 63 HOH HOH . F 3 HOH B 7 407 54 HOH HOH . F 3 HOH B 8 408 44 HOH HOH . F 3 HOH B 9 409 46 HOH HOH . F 3 HOH B 10 410 138 HOH HOH . F 3 HOH B 11 411 64 HOH HOH . F 3 HOH B 12 412 40 HOH HOH . F 3 HOH B 13 413 58 HOH HOH . F 3 HOH B 14 414 118 HOH HOH . F 3 HOH B 15 415 60 HOH HOH . F 3 HOH B 16 416 125 HOH HOH . F 3 HOH B 17 417 66 HOH HOH . F 3 HOH B 18 418 135 HOH HOH . F 3 HOH B 19 419 43 HOH HOH . F 3 HOH B 20 420 39 HOH HOH . F 3 HOH B 21 421 128 HOH HOH . F 3 HOH B 22 422 5 HOH HOH . F 3 HOH B 23 423 48 HOH HOH . F 3 HOH B 24 424 25 HOH HOH . F 3 HOH B 25 425 130 HOH HOH . F 3 HOH B 26 426 65 HOH HOH . F 3 HOH B 27 427 49 HOH HOH . F 3 HOH B 28 428 42 HOH HOH . F 3 HOH B 29 429 126 HOH HOH . F 3 HOH B 30 430 103 HOH HOH . F 3 HOH B 31 431 53 HOH HOH . F 3 HOH B 32 432 41 HOH HOH . F 3 HOH B 33 433 59 HOH HOH . F 3 HOH B 34 434 69 HOH HOH . F 3 HOH B 35 435 129 HOH HOH . F 3 HOH B 36 436 122 HOH HOH . F 3 HOH B 37 437 61 HOH HOH . F 3 HOH B 38 438 50 HOH HOH . F 3 HOH B 39 439 127 HOH HOH . F 3 HOH B 40 440 52 HOH HOH . F 3 HOH B 41 441 47 HOH HOH . F 3 HOH B 42 442 136 HOH HOH . F 3 HOH B 43 443 137 HOH HOH . F 3 HOH B 44 444 133 HOH HOH . F 3 HOH B 45 445 123 HOH HOH . F 3 HOH B 46 446 56 HOH HOH . F 3 HOH B 47 447 119 HOH HOH . F 3 HOH B 48 448 131 HOH HOH . F 3 HOH B 49 449 67 HOH HOH . F 3 HOH B 50 450 121 HOH HOH . F 3 HOH B 51 451 62 HOH HOH . F 3 HOH B 52 452 57 HOH HOH . F 3 HOH B 53 453 132 HOH HOH . F 3 HOH B 54 454 140 HOH HOH . F 3 HOH B 55 455 55 HOH HOH . F 3 HOH B 56 456 73 HOH HOH . F 3 HOH B 57 457 90 HOH HOH . F 3 HOH B 58 458 139 HOH HOH . F 3 HOH B 59 459 79 HOH HOH . F 3 HOH B 60 460 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.417 _atom_site.Cartn_y -26.998 _atom_site.Cartn_z 12.113 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #