data_5GXP
#
_model_server_result.job_id            nHlUw07TODAT3-0rynu0SQ 
_model_server_result.datetime_utc      '2024-10-19 17:45:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gxp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":304}' 
#
_entry.id    5GXP 
#
_exptl.entry_id    5GXP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GXP 
_cell.length_a            60.84 
_cell.length_b            102.59 
_cell.length_c            115.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GXP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 L N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 B SG CYS 7 B CYS 22 1_555 B SG CYS 137 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 B SG CYS 25 B CYS 42 1_555 B SG CYS 41 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 B SG CYS 109 B CYS 128 1_555 B SG CYS 210 B CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 116 B CYS 136 1_555 B SG CYS 183 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf11 B SG CYS 148 B CYS 168 1_555 B SG CYS 162 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf12 B SG CYS 173 B CYS 191 1_555 B SG CYS 197 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A O CYS 7 A CYS 22 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc2 A OE1 GLU 52 A GLU 70 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc3 A OD1 ASP 53 A ASP 71 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc4 A OD2 ASP 53 A ASP 71 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc5 A O ASN 54 A ASN 72 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc6 A O VAL 57 A VAL 75 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc7 A OE1 GLU 59 A GLU 77 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc8 A OE2 GLU 62 A GLU 80 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc9 A O HIS 73 A HIS 91 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc10 A OG SER 92 A SER 110 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? 
metalc ? metalc11 A O GLY 120 A GLY 140 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? 
metalc ? metalc12 A O GLY 122 A GLY 142 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc13 J CA CA . A CA 308 1_555 R O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? 
metalc ? metalc14 B OE1 GLU 52 B GLU 70 1_555 N CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc15 B O ASN 54 B ASN 72 1_555 N CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc16 B O VAL 57 B VAL 75 1_555 N CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc17 B OE1 GLU 59 B GLU 77 1_555 N CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc18 B OE2 GLU 62 B GLU 80 1_555 N CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc19 N CA CA . B CA 301 1_555 S O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
#
_chem_comp.formula           'C6 H14 O4' 
_chem_comp.formula_weight    150.173 
_chem_comp.id                PGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGE sing 250 n n 
C1 C2 PGE sing 251 n n 
C1 H1 PGE sing 252 n n 
C1 H12 PGE sing 253 n n 
O1 HO1 PGE sing 254 n n 
C2 O2 PGE sing 255 n n 
C2 H2 PGE sing 256 n n 
C2 H22 PGE sing 257 n n 
O2 C3 PGE sing 258 n n 
C3 C4 PGE sing 259 n n 
C3 H3 PGE sing 260 n n 
C3 H32 PGE sing 261 n n 
C4 O3 PGE sing 262 n n 
C4 H4 PGE sing 263 n n 
C4 H42 PGE sing 264 n n 
O4 C6 PGE sing 265 n n 
O4 HO4 PGE sing 266 n n 
C6 C5 PGE sing 267 n n 
C6 H6 PGE sing 268 n n 
C6 H62 PGE sing 269 n n 
C5 O3 PGE sing 270 n n 
C5 H5 PGE sing 271 n n 
C5 H52 PGE sing 272 n n 
#
_atom_sites.entry_id                     5GXP 
_atom_sites.fract_transf_matrix[1][1]    0.016437 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009748 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008642 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 301 10 CA CA . 
D 2 CA A 1 302 11 CA CA . 
E 2 CA A 1 303 13 CA CA . 
F 2 CA A 1 304 15 CA CA . 
G 2 CA A 1 305 16 CA CA . 
H 2 CA A 1 306 19 CA CA . 
I 2 CA A 1 307 20 CA CA . 
J 2 CA A 1 308 22 CA CA . 
K 2 CA A 1 309 23 CA CA . 
L 3 PGE A 1 310 2 PGE PGE . 
M 4 GOL A 1 311 2 GOL GOL . 
N 2 CA B 1 301 8 CA CA . 
O 2 CA B 1 302 9 CA CA . 
P 2 CA B 1 303 21 CA CA . 
Q 3 PGE B 1 304 1 PGE PGE . 
R 5 HOH A 1 401 86 HOH HOH . 
R 5 HOH A 2 402 12 HOH HOH . 
R 5 HOH A 3 403 6 HOH HOH . 
R 5 HOH A 4 404 37 HOH HOH . 
R 5 HOH A 5 405 84 HOH HOH . 
R 5 HOH A 6 406 87 HOH HOH . 
R 5 HOH A 7 407 61 HOH HOH . 
R 5 HOH A 8 408 26 HOH HOH . 
R 5 HOH A 9 409 8 HOH HOH . 
R 5 HOH A 10 410 74 HOH HOH . 
R 5 HOH A 11 411 60 HOH HOH . 
R 5 HOH A 12 412 73 HOH HOH . 
R 5 HOH A 13 413 66 HOH HOH . 
R 5 HOH A 14 414 53 HOH HOH . 
R 5 HOH A 15 415 72 HOH HOH . 
R 5 HOH A 16 416 76 HOH HOH . 
R 5 HOH A 17 417 1 HOH HOH . 
R 5 HOH A 18 418 51 HOH HOH . 
R 5 HOH A 19 419 50 HOH HOH . 
R 5 HOH A 20 420 48 HOH HOH . 
R 5 HOH A 21 421 4 HOH HOH . 
R 5 HOH A 22 422 56 HOH HOH . 
R 5 HOH A 23 423 19 HOH HOH . 
R 5 HOH A 24 424 41 HOH HOH . 
R 5 HOH A 25 425 27 HOH HOH . 
R 5 HOH A 26 426 33 HOH HOH . 
R 5 HOH A 27 427 25 HOH HOH . 
R 5 HOH A 28 428 85 HOH HOH . 
R 5 HOH A 29 429 80 HOH HOH . 
S 5 HOH B 1 401 52 HOH HOH . 
S 5 HOH B 2 402 64 HOH HOH . 
S 5 HOH B 3 403 9 HOH HOH . 
S 5 HOH B 4 404 62 HOH HOH . 
S 5 HOH B 5 405 63 HOH HOH . 
S 5 HOH B 6 406 65 HOH HOH . 
S 5 HOH B 7 407 47 HOH HOH . 
S 5 HOH B 8 408 79 HOH HOH . 
S 5 HOH B 9 409 71 HOH HOH . 
S 5 HOH B 10 410 36 HOH HOH . 
S 5 HOH B 11 411 55 HOH HOH . 
S 5 HOH B 12 412 7 HOH HOH . 
S 5 HOH B 13 413 16 HOH HOH . 
S 5 HOH B 14 414 30 HOH HOH . 
S 5 HOH B 15 415 69 HOH HOH . 
S 5 HOH B 16 416 78 HOH HOH . 
S 5 HOH B 17 417 22 HOH HOH . 
S 5 HOH B 18 418 58 HOH HOH . 
S 5 HOH B 19 419 45 HOH HOH . 
S 5 HOH B 20 420 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGE . . . Q 3 3.756 9.012 -56.931 1 20 ? C1 PGE 304 B 1 
HETATM 2 O O1 PGE . . . Q 3 4.283 7.73 -56.633 1 20 ? O1 PGE 304 B 1 
HETATM 3 C C2 PGE . . . Q 3 2.51 9.24 -56.102 1 20 ? C2 PGE 304 B 1 
HETATM 4 O O2 PGE . . . Q 3 1.9 10.447 -56.513 1 20 ? O2 PGE 304 B 1 
HETATM 5 C C3 PGE . . . Q 3 2.453 11.588 -55.888 1 20 ? C3 PGE 304 B 1 
HETATM 6 C C4 PGE . . . Q 3 1.771 11.798 -54.551 1 20 ? C4 PGE 304 B 1 
HETATM 7 O O4 PGE . . . Q 3 3.316 11.374 -51.14 1 20 ? O4 PGE 304 B 1 
HETATM 8 C C6 PGE . . . Q 3 4.113 12.25 -51.927 1 20 ? C6 PGE 304 B 1 
HETATM 9 C C5 PGE . . . Q 3 3.822 12.008 -53.394 1 20 ? C5 PGE 304 B 1 
HETATM 10 O O3 PGE . . . Q 3 2.587 12.607 -53.729 1 20 ? O3 PGE 304 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#