data_5GY6 # _model_server_result.job_id rZzIp5f8bGvD6Jhk50zH_A _model_server_result.datetime_utc '2024-11-05 00:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5GY6 # _exptl.entry_id 5GY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GY6 _cell.length_a 31.701 _cell.length_b 42.945 _cell.length_c 60.183 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 83 A CYS 83 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf2 A SG CYS 5 A CYS 5 1_555 A SG CYS 83 A CYS 83 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf3 A SG CYS 7 A CYS 7 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 47 A CYS 47 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A ND1 HIS 34 A HIS 34 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 A NE2 HIS 37 A HIS 37 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc3 A OE1 GLU 53 A GLU 53 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc4 A OE2 GLU 53 A GLU 53 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc5 A O PHE 100 A PHE 100 1_555 B ZN ZN . A ZN 201 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GY6 _atom_sites.fract_transf_matrix[1][1] 0.031545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 1 ZN ZN . C 3 HOH A 1 301 114 HOH HOH . C 3 HOH A 2 302 101 HOH HOH . C 3 HOH A 3 303 109 HOH HOH . C 3 HOH A 4 304 43 HOH HOH . C 3 HOH A 5 305 65 HOH HOH . C 3 HOH A 6 306 93 HOH HOH . C 3 HOH A 7 307 105 HOH HOH . C 3 HOH A 8 308 104 HOH HOH . C 3 HOH A 9 309 52 HOH HOH . C 3 HOH A 10 310 45 HOH HOH . C 3 HOH A 11 311 20 HOH HOH . C 3 HOH A 12 312 73 HOH HOH . C 3 HOH A 13 313 56 HOH HOH . C 3 HOH A 14 314 55 HOH HOH . C 3 HOH A 15 315 120 HOH HOH . C 3 HOH A 16 316 27 HOH HOH . C 3 HOH A 17 317 87 HOH HOH . C 3 HOH A 18 318 84 HOH HOH . C 3 HOH A 19 319 5 HOH HOH . C 3 HOH A 20 320 74 HOH HOH . C 3 HOH A 21 321 35 HOH HOH . C 3 HOH A 22 322 108 HOH HOH . C 3 HOH A 23 323 85 HOH HOH . C 3 HOH A 24 324 57 HOH HOH . C 3 HOH A 25 325 71 HOH HOH . C 3 HOH A 26 326 86 HOH HOH . C 3 HOH A 27 327 59 HOH HOH . C 3 HOH A 28 328 77 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 70 HOH HOH . C 3 HOH A 31 331 34 HOH HOH . C 3 HOH A 32 332 18 HOH HOH . C 3 HOH A 33 333 4 HOH HOH . C 3 HOH A 34 334 16 HOH HOH . C 3 HOH A 35 335 79 HOH HOH . C 3 HOH A 36 336 3 HOH HOH . C 3 HOH A 37 337 11 HOH HOH . C 3 HOH A 38 338 9 HOH HOH . C 3 HOH A 39 339 72 HOH HOH . C 3 HOH A 40 340 13 HOH HOH . C 3 HOH A 41 341 50 HOH HOH . C 3 HOH A 42 342 80 HOH HOH . C 3 HOH A 43 343 63 HOH HOH . C 3 HOH A 44 344 75 HOH HOH . C 3 HOH A 45 345 38 HOH HOH . C 3 HOH A 46 346 98 HOH HOH . C 3 HOH A 47 347 32 HOH HOH . C 3 HOH A 48 348 7 HOH HOH . C 3 HOH A 49 349 68 HOH HOH . C 3 HOH A 50 350 26 HOH HOH . C 3 HOH A 51 351 60 HOH HOH . C 3 HOH A 52 352 41 HOH HOH . C 3 HOH A 53 353 37 HOH HOH . C 3 HOH A 54 354 96 HOH HOH . C 3 HOH A 55 355 21 HOH HOH . C 3 HOH A 56 356 90 HOH HOH . C 3 HOH A 57 357 31 HOH HOH . C 3 HOH A 58 358 17 HOH HOH . C 3 HOH A 59 359 24 HOH HOH . C 3 HOH A 60 360 23 HOH HOH . C 3 HOH A 61 361 19 HOH HOH . C 3 HOH A 62 362 6 HOH HOH . C 3 HOH A 63 363 2 HOH HOH . C 3 HOH A 64 364 42 HOH HOH . C 3 HOH A 65 365 1 HOH HOH . C 3 HOH A 66 366 82 HOH HOH . C 3 HOH A 67 367 53 HOH HOH . C 3 HOH A 68 368 8 HOH HOH . C 3 HOH A 69 369 49 HOH HOH . C 3 HOH A 70 370 47 HOH HOH . C 3 HOH A 71 371 25 HOH HOH . C 3 HOH A 72 372 12 HOH HOH . C 3 HOH A 73 373 97 HOH HOH . C 3 HOH A 74 374 14 HOH HOH . C 3 HOH A 75 375 95 HOH HOH . C 3 HOH A 76 376 28 HOH HOH . C 3 HOH A 77 377 61 HOH HOH . C 3 HOH A 78 378 33 HOH HOH . C 3 HOH A 79 379 22 HOH HOH . C 3 HOH A 80 380 88 HOH HOH . C 3 HOH A 81 381 15 HOH HOH . C 3 HOH A 82 382 62 HOH HOH . C 3 HOH A 83 383 100 HOH HOH . C 3 HOH A 84 384 51 HOH HOH . C 3 HOH A 85 385 30 HOH HOH . C 3 HOH A 86 386 58 HOH HOH . C 3 HOH A 87 387 78 HOH HOH . C 3 HOH A 88 388 81 HOH HOH . C 3 HOH A 89 389 39 HOH HOH . C 3 HOH A 90 390 46 HOH HOH . C 3 HOH A 91 391 118 HOH HOH . C 3 HOH A 92 392 36 HOH HOH . C 3 HOH A 93 393 54 HOH HOH . C 3 HOH A 94 394 106 HOH HOH . C 3 HOH A 95 395 44 HOH HOH . C 3 HOH A 96 396 111 HOH HOH . C 3 HOH A 97 397 116 HOH HOH . C 3 HOH A 98 398 48 HOH HOH . C 3 HOH A 99 399 113 HOH HOH . C 3 HOH A 100 400 91 HOH HOH . C 3 HOH A 101 401 92 HOH HOH . C 3 HOH A 102 402 64 HOH HOH . C 3 HOH A 103 403 103 HOH HOH . C 3 HOH A 104 404 83 HOH HOH . C 3 HOH A 105 405 102 HOH HOH . C 3 HOH A 106 406 119 HOH HOH . C 3 HOH A 107 407 107 HOH HOH . C 3 HOH A 108 408 66 HOH HOH . C 3 HOH A 109 409 94 HOH HOH . C 3 HOH A 110 410 10 HOH HOH . C 3 HOH A 111 411 89 HOH HOH . C 3 HOH A 112 412 40 HOH HOH . C 3 HOH A 113 413 115 HOH HOH . C 3 HOH A 114 414 117 HOH HOH . C 3 HOH A 115 415 67 HOH HOH . C 3 HOH A 116 416 110 HOH HOH . C 3 HOH A 117 417 76 HOH HOH . C 3 HOH A 118 418 112 HOH HOH . C 3 HOH A 119 419 99 HOH HOH . C 3 HOH A 120 420 69 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.4 _atom_site.Cartn_y -0.55 _atom_site.Cartn_z 15.332 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #