data_5GZI
#
_model_server_result.job_id            HByc5FRQegytRi-1qo7g_g 
_model_server_result.datetime_utc      '2024-11-30 09:41:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gzi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    5GZI 
#
_exptl.entry_id    5GZI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              129.157 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-piperidine-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          132.72 
_cell.angle_gamma         90 
_cell.entry_id            5GZI 
_cell.length_a            136.926 
_cell.length_b            74.06 
_cell.length_c            95.718 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GZI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C6 H11 N O2' 
_chem_comp.formula_weight    129.157 
_chem_comp.id                YCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-piperidine-2-carboxylic acid' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O YCP doub 451 n n 
C CA YCP sing 452 n n 
C OXT YCP sing 453 n n 
N CA YCP sing 454 n n 
N CE YCP sing 455 n n 
CA CB YCP sing 456 n n 
CB CG YCP sing 457 n n 
CD CE YCP sing 458 n n 
CD CG YCP sing 459 n n 
N H YCP sing 460 n n 
CA HA YCP sing 461 n n 
CB HB YCP sing 462 n n 
CB HBA YCP sing 463 n n 
CD HD YCP sing 464 n n 
CD HDA YCP sing 465 n n 
CE HE YCP sing 466 n n 
CE HEA YCP sing 467 n n 
CG HG YCP sing 468 n n 
CG HGA YCP sing 469 n n 
OXT HXT YCP sing 470 n n 
#
_atom_sites.entry_id                     5GZI 
_atom_sites.fract_transf_matrix[1][1]    0.007303 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006744 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013503 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014221 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD B 1 401 401 NAD NAD . 
D 3 YCP B 1 402 402 YCP YCP . 
E 2 NAD A 1 401 401 NAD NAD . 
F 3 YCP A 1 402 402 YCP YCP . 
G 4 HOH B 1 501 503 HOH HOH . 
G 4 HOH B 2 502 504 HOH HOH . 
G 4 HOH B 3 503 506 HOH HOH . 
G 4 HOH B 4 504 507 HOH HOH . 
G 4 HOH B 5 505 508 HOH HOH . 
G 4 HOH B 6 506 509 HOH HOH . 
G 4 HOH B 7 507 510 HOH HOH . 
G 4 HOH B 8 508 511 HOH HOH . 
G 4 HOH B 9 509 512 HOH HOH . 
G 4 HOH B 10 510 513 HOH HOH . 
G 4 HOH B 11 511 514 HOH HOH . 
G 4 HOH B 12 512 515 HOH HOH . 
G 4 HOH B 13 513 516 HOH HOH . 
G 4 HOH B 14 514 517 HOH HOH . 
G 4 HOH B 15 515 518 HOH HOH . 
G 4 HOH B 16 516 519 HOH HOH . 
G 4 HOH B 17 517 520 HOH HOH . 
G 4 HOH B 18 518 521 HOH HOH . 
G 4 HOH B 19 519 522 HOH HOH . 
G 4 HOH B 20 520 523 HOH HOH . 
G 4 HOH B 21 521 524 HOH HOH . 
G 4 HOH B 22 522 525 HOH HOH . 
G 4 HOH B 23 523 526 HOH HOH . 
G 4 HOH B 24 524 527 HOH HOH . 
G 4 HOH B 25 525 528 HOH HOH . 
G 4 HOH B 26 526 529 HOH HOH . 
G 4 HOH B 27 527 530 HOH HOH . 
G 4 HOH B 28 528 531 HOH HOH . 
G 4 HOH B 29 529 532 HOH HOH . 
G 4 HOH B 30 530 533 HOH HOH . 
G 4 HOH B 31 531 534 HOH HOH . 
G 4 HOH B 32 532 535 HOH HOH . 
G 4 HOH B 33 533 536 HOH HOH . 
G 4 HOH B 34 534 537 HOH HOH . 
G 4 HOH B 35 535 538 HOH HOH . 
G 4 HOH B 36 536 539 HOH HOH . 
G 4 HOH B 37 537 540 HOH HOH . 
G 4 HOH B 38 538 541 HOH HOH . 
G 4 HOH B 39 539 542 HOH HOH . 
G 4 HOH B 40 540 543 HOH HOH . 
G 4 HOH B 41 541 544 HOH HOH . 
G 4 HOH B 42 542 545 HOH HOH . 
G 4 HOH B 43 543 546 HOH HOH . 
G 4 HOH B 44 544 547 HOH HOH . 
G 4 HOH B 45 545 548 HOH HOH . 
G 4 HOH B 46 546 549 HOH HOH . 
G 4 HOH B 47 547 550 HOH HOH . 
G 4 HOH B 48 548 551 HOH HOH . 
G 4 HOH B 49 549 552 HOH HOH . 
G 4 HOH B 50 550 553 HOH HOH . 
G 4 HOH B 51 551 554 HOH HOH . 
G 4 HOH B 52 552 555 HOH HOH . 
G 4 HOH B 53 553 556 HOH HOH . 
G 4 HOH B 54 554 557 HOH HOH . 
G 4 HOH B 55 555 558 HOH HOH . 
G 4 HOH B 56 556 559 HOH HOH . 
G 4 HOH B 57 557 560 HOH HOH . 
G 4 HOH B 58 558 561 HOH HOH . 
G 4 HOH B 59 559 562 HOH HOH . 
G 4 HOH B 60 560 563 HOH HOH . 
G 4 HOH B 61 561 564 HOH HOH . 
G 4 HOH B 62 562 565 HOH HOH . 
G 4 HOH B 63 563 566 HOH HOH . 
G 4 HOH B 64 564 567 HOH HOH . 
G 4 HOH B 65 565 568 HOH HOH . 
G 4 HOH B 66 566 569 HOH HOH . 
G 4 HOH B 67 567 570 HOH HOH . 
G 4 HOH B 68 568 571 HOH HOH . 
G 4 HOH B 69 569 572 HOH HOH . 
G 4 HOH B 70 570 573 HOH HOH . 
G 4 HOH B 71 571 574 HOH HOH . 
G 4 HOH B 72 572 575 HOH HOH . 
G 4 HOH B 73 573 576 HOH HOH . 
G 4 HOH B 74 574 577 HOH HOH . 
G 4 HOH B 75 575 578 HOH HOH . 
G 4 HOH B 76 576 579 HOH HOH . 
G 4 HOH B 77 577 580 HOH HOH . 
G 4 HOH B 78 578 581 HOH HOH . 
G 4 HOH B 79 579 582 HOH HOH . 
G 4 HOH B 80 580 583 HOH HOH . 
G 4 HOH B 81 581 584 HOH HOH . 
G 4 HOH B 82 582 585 HOH HOH . 
G 4 HOH B 83 583 586 HOH HOH . 
G 4 HOH B 84 584 587 HOH HOH . 
G 4 HOH B 85 585 588 HOH HOH . 
G 4 HOH B 86 586 589 HOH HOH . 
G 4 HOH B 87 587 590 HOH HOH . 
G 4 HOH B 88 588 591 HOH HOH . 
G 4 HOH B 89 589 592 HOH HOH . 
G 4 HOH B 90 590 593 HOH HOH . 
G 4 HOH B 91 591 594 HOH HOH . 
G 4 HOH B 92 592 595 HOH HOH . 
G 4 HOH B 93 593 596 HOH HOH . 
G 4 HOH B 94 594 597 HOH HOH . 
G 4 HOH B 95 595 598 HOH HOH . 
G 4 HOH B 96 596 599 HOH HOH . 
G 4 HOH B 97 597 600 HOH HOH . 
G 4 HOH B 98 598 601 HOH HOH . 
G 4 HOH B 99 599 602 HOH HOH . 
G 4 HOH B 100 600 603 HOH HOH . 
G 4 HOH B 101 601 604 HOH HOH . 
G 4 HOH B 102 602 605 HOH HOH . 
G 4 HOH B 103 603 606 HOH HOH . 
G 4 HOH B 104 604 607 HOH HOH . 
G 4 HOH B 105 605 608 HOH HOH . 
G 4 HOH B 106 606 609 HOH HOH . 
G 4 HOH B 107 607 610 HOH HOH . 
G 4 HOH B 108 608 611 HOH HOH . 
G 4 HOH B 109 609 612 HOH HOH . 
G 4 HOH B 110 610 613 HOH HOH . 
G 4 HOH B 111 611 614 HOH HOH . 
G 4 HOH B 112 612 615 HOH HOH . 
G 4 HOH B 113 613 616 HOH HOH . 
G 4 HOH B 114 614 617 HOH HOH . 
G 4 HOH B 115 615 618 HOH HOH . 
G 4 HOH B 116 616 619 HOH HOH . 
G 4 HOH B 117 617 620 HOH HOH . 
G 4 HOH B 118 618 621 HOH HOH . 
G 4 HOH B 119 619 622 HOH HOH . 
G 4 HOH B 120 620 623 HOH HOH . 
G 4 HOH B 121 621 624 HOH HOH . 
G 4 HOH B 122 622 625 HOH HOH . 
G 4 HOH B 123 623 626 HOH HOH . 
G 4 HOH B 124 624 627 HOH HOH . 
G 4 HOH B 125 625 628 HOH HOH . 
G 4 HOH B 126 626 629 HOH HOH . 
G 4 HOH B 127 627 630 HOH HOH . 
G 4 HOH B 128 628 631 HOH HOH . 
G 4 HOH B 129 629 632 HOH HOH . 
G 4 HOH B 130 630 633 HOH HOH . 
G 4 HOH B 131 631 634 HOH HOH . 
G 4 HOH B 132 632 635 HOH HOH . 
G 4 HOH B 133 633 636 HOH HOH . 
G 4 HOH B 134 634 637 HOH HOH . 
G 4 HOH B 135 635 638 HOH HOH . 
G 4 HOH B 136 636 639 HOH HOH . 
G 4 HOH B 137 637 640 HOH HOH . 
G 4 HOH B 138 638 641 HOH HOH . 
G 4 HOH B 139 639 642 HOH HOH . 
H 4 HOH A 1 501 503 HOH HOH . 
H 4 HOH A 2 502 504 HOH HOH . 
H 4 HOH A 3 503 506 HOH HOH . 
H 4 HOH A 4 504 507 HOH HOH . 
H 4 HOH A 5 505 508 HOH HOH . 
H 4 HOH A 6 506 509 HOH HOH . 
H 4 HOH A 7 507 510 HOH HOH . 
H 4 HOH A 8 508 511 HOH HOH . 
H 4 HOH A 9 509 512 HOH HOH . 
H 4 HOH A 10 510 513 HOH HOH . 
H 4 HOH A 11 511 514 HOH HOH . 
H 4 HOH A 12 512 515 HOH HOH . 
H 4 HOH A 13 513 516 HOH HOH . 
H 4 HOH A 14 514 517 HOH HOH . 
H 4 HOH A 15 515 518 HOH HOH . 
H 4 HOH A 16 516 519 HOH HOH . 
H 4 HOH A 17 517 520 HOH HOH . 
H 4 HOH A 18 518 521 HOH HOH . 
H 4 HOH A 19 519 522 HOH HOH . 
H 4 HOH A 20 520 523 HOH HOH . 
H 4 HOH A 21 521 524 HOH HOH . 
H 4 HOH A 22 522 525 HOH HOH . 
H 4 HOH A 23 523 526 HOH HOH . 
H 4 HOH A 24 524 527 HOH HOH . 
H 4 HOH A 25 525 528 HOH HOH . 
H 4 HOH A 26 526 529 HOH HOH . 
H 4 HOH A 27 527 530 HOH HOH . 
H 4 HOH A 28 528 531 HOH HOH . 
H 4 HOH A 29 529 532 HOH HOH . 
H 4 HOH A 30 530 533 HOH HOH . 
H 4 HOH A 31 531 534 HOH HOH . 
H 4 HOH A 32 532 535 HOH HOH . 
H 4 HOH A 33 533 536 HOH HOH . 
H 4 HOH A 34 534 537 HOH HOH . 
H 4 HOH A 35 535 538 HOH HOH . 
H 4 HOH A 36 536 539 HOH HOH . 
H 4 HOH A 37 537 540 HOH HOH . 
H 4 HOH A 38 538 541 HOH HOH . 
H 4 HOH A 39 539 542 HOH HOH . 
H 4 HOH A 40 540 543 HOH HOH . 
H 4 HOH A 41 541 544 HOH HOH . 
H 4 HOH A 42 542 545 HOH HOH . 
H 4 HOH A 43 543 546 HOH HOH . 
H 4 HOH A 44 544 547 HOH HOH . 
H 4 HOH A 45 545 548 HOH HOH . 
H 4 HOH A 46 546 549 HOH HOH . 
H 4 HOH A 47 547 550 HOH HOH . 
H 4 HOH A 48 548 551 HOH HOH . 
H 4 HOH A 49 549 552 HOH HOH . 
H 4 HOH A 50 550 553 HOH HOH . 
H 4 HOH A 51 551 554 HOH HOH . 
H 4 HOH A 52 552 555 HOH HOH . 
H 4 HOH A 53 553 556 HOH HOH . 
H 4 HOH A 54 554 557 HOH HOH . 
H 4 HOH A 55 555 558 HOH HOH . 
H 4 HOH A 56 556 559 HOH HOH . 
H 4 HOH A 57 557 560 HOH HOH . 
H 4 HOH A 58 558 561 HOH HOH . 
H 4 HOH A 59 559 562 HOH HOH . 
H 4 HOH A 60 560 563 HOH HOH . 
H 4 HOH A 61 561 564 HOH HOH . 
H 4 HOH A 62 562 565 HOH HOH . 
H 4 HOH A 63 563 566 HOH HOH . 
H 4 HOH A 64 564 567 HOH HOH . 
H 4 HOH A 65 565 568 HOH HOH . 
H 4 HOH A 66 566 569 HOH HOH . 
H 4 HOH A 67 567 570 HOH HOH . 
H 4 HOH A 68 568 571 HOH HOH . 
H 4 HOH A 69 569 572 HOH HOH . 
H 4 HOH A 70 570 573 HOH HOH . 
H 4 HOH A 71 571 574 HOH HOH . 
H 4 HOH A 72 572 575 HOH HOH . 
H 4 HOH A 73 573 576 HOH HOH . 
H 4 HOH A 74 574 577 HOH HOH . 
H 4 HOH A 75 575 578 HOH HOH . 
H 4 HOH A 76 576 579 HOH HOH . 
H 4 HOH A 77 577 580 HOH HOH . 
H 4 HOH A 78 578 581 HOH HOH . 
H 4 HOH A 79 579 582 HOH HOH . 
H 4 HOH A 80 580 583 HOH HOH . 
H 4 HOH A 81 581 584 HOH HOH . 
H 4 HOH A 82 582 585 HOH HOH . 
H 4 HOH A 83 583 586 HOH HOH . 
H 4 HOH A 84 584 587 HOH HOH . 
H 4 HOH A 85 585 588 HOH HOH . 
H 4 HOH A 86 586 589 HOH HOH . 
H 4 HOH A 87 587 590 HOH HOH . 
H 4 HOH A 88 588 591 HOH HOH . 
H 4 HOH A 89 589 592 HOH HOH . 
H 4 HOH A 90 590 593 HOH HOH . 
H 4 HOH A 91 591 594 HOH HOH . 
H 4 HOH A 92 592 595 HOH HOH . 
H 4 HOH A 93 593 596 HOH HOH . 
H 4 HOH A 94 594 597 HOH HOH . 
H 4 HOH A 95 595 598 HOH HOH . 
H 4 HOH A 96 596 599 HOH HOH . 
H 4 HOH A 97 597 600 HOH HOH . 
H 4 HOH A 98 598 601 HOH HOH . 
H 4 HOH A 99 599 602 HOH HOH . 
H 4 HOH A 100 600 603 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C YCP . . . D 3 91.713 31.196 84.011 1 32.9 ? C YCP 402 B 1 
HETATM 2 N N YCP . . . D 3 90.156 29.835 82.615 1 38.52 ? N YCP 402 B 1 
HETATM 3 O O YCP . . . D 3 92.365 30.155 84.186 1 31.71 ? O YCP 402 B 1 
HETATM 4 C CA YCP . . . D 3 90.447 31.175 83.149 1 37.36 ? CA YCP 402 B 1 
HETATM 5 C CB YCP . . . D 3 89.369 31.769 83.975 1 39.33 ? CB YCP 402 B 1 
HETATM 6 C CD YCP . . . D 3 87.704 30.187 82.983 1 43.4 ? CD YCP 402 B 1 
HETATM 7 C CE YCP . . . D 3 88.921 29.268 83.156 1 44.65 ? CE YCP 402 B 1 
HETATM 8 C CG YCP . . . D 3 88.038 31.633 83.297 1 38.37 ? CG YCP 402 B 1 
HETATM 9 O OXT YCP . . . D 3 92.031 32.297 84.449 1 34.84 ? OXT YCP 402 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#