data_5GZS # _model_server_result.job_id yATCXN07iLcO0hbRTgSRbw _model_server_result.datetime_utc '2024-11-15 20:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gzs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5GZS # _exptl.entry_id 5GZS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GZS _cell.length_a 111.706 _cell.length_b 111.706 _cell.length_c 138.647 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GZS _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -69.3235 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 257 A CYS 302 1_555 A SG CYS 264 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C PRO 146 A PRO 191 1_555 A N MSE 147 A MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 147 A MSE 192 1_555 A N LEU 148 A LEU 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLU 258 A GLU 303 1_555 A N MSE 259 A MSE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 259 A MSE 304 1_555 A N LEU 260 A LEU 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C SER 276 A SER 321 1_555 A N MSE 277 A MSE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 277 A MSE 322 1_555 A N PHE 278 A PHE 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 ? covale ? covale7 A C GLN 351 A GLN 396 1_555 A N MSE 352 A MSE 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 352 A MSE 397 1_555 A N LEU 353 A LEU 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 A C THR 403 A THR 448 1_555 A N MSE 404 A MSE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale10 A C MSE 404 A MSE 449 1_555 A N ILE 405 A ILE 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale11 A C LYS 435 A LYS 480 1_555 A N MSE 436 A MSE 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 436 A MSE 481 1_555 A N LEU 437 A LEU 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 5GZS _atom_sites.fract_transf_matrix[1][1] 0.008952 _atom_sites.fract_transf_matrix[1][2] 0.005168 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ARG A 1 501 1 ARG ARG . C 3 HOH A 1 601 22 HOH HOH . C 3 HOH A 2 602 59 HOH HOH . C 3 HOH A 3 603 13 HOH HOH . C 3 HOH A 4 604 31 HOH HOH . C 3 HOH A 5 605 71 HOH HOH . C 3 HOH A 6 606 51 HOH HOH . C 3 HOH A 7 607 47 HOH HOH . C 3 HOH A 8 608 7 HOH HOH . C 3 HOH A 9 609 38 HOH HOH . C 3 HOH A 10 610 58 HOH HOH . C 3 HOH A 11 611 50 HOH HOH . C 3 HOH A 12 612 52 HOH HOH . C 3 HOH A 13 613 67 HOH HOH . C 3 HOH A 14 614 8 HOH HOH . C 3 HOH A 15 615 30 HOH HOH . C 3 HOH A 16 616 26 HOH HOH . C 3 HOH A 17 617 37 HOH HOH . C 3 HOH A 18 618 45 HOH HOH . C 3 HOH A 19 619 16 HOH HOH . C 3 HOH A 20 620 10 HOH HOH . C 3 HOH A 21 621 69 HOH HOH . C 3 HOH A 22 622 24 HOH HOH . C 3 HOH A 23 623 49 HOH HOH . C 3 HOH A 24 624 14 HOH HOH . C 3 HOH A 25 625 54 HOH HOH . C 3 HOH A 26 626 42 HOH HOH . C 3 HOH A 27 627 33 HOH HOH . C 3 HOH A 28 628 46 HOH HOH . C 3 HOH A 29 629 48 HOH HOH . C 3 HOH A 30 630 65 HOH HOH . C 3 HOH A 31 631 53 HOH HOH . C 3 HOH A 32 632 21 HOH HOH . C 3 HOH A 33 633 5 HOH HOH . C 3 HOH A 34 634 74 HOH HOH . C 3 HOH A 35 635 6 HOH HOH . C 3 HOH A 36 636 55 HOH HOH . C 3 HOH A 37 637 11 HOH HOH . C 3 HOH A 38 638 60 HOH HOH . C 3 HOH A 39 639 20 HOH HOH . C 3 HOH A 40 640 68 HOH HOH . C 3 HOH A 41 641 56 HOH HOH . C 3 HOH A 42 642 34 HOH HOH . C 3 HOH A 43 643 9 HOH HOH . C 3 HOH A 44 644 66 HOH HOH . C 3 HOH A 45 645 29 HOH HOH . C 3 HOH A 46 646 19 HOH HOH . C 3 HOH A 47 647 2 HOH HOH . C 3 HOH A 48 648 3 HOH HOH . C 3 HOH A 49 649 41 HOH HOH . C 3 HOH A 50 650 12 HOH HOH . C 3 HOH A 51 651 40 HOH HOH . C 3 HOH A 52 652 1 HOH HOH . C 3 HOH A 53 653 36 HOH HOH . C 3 HOH A 54 654 18 HOH HOH . C 3 HOH A 55 655 4 HOH HOH . C 3 HOH A 56 656 25 HOH HOH . C 3 HOH A 57 657 23 HOH HOH . C 3 HOH A 58 658 39 HOH HOH . C 3 HOH A 59 659 43 HOH HOH . C 3 HOH A 60 660 44 HOH HOH . C 3 HOH A 61 661 17 HOH HOH . C 3 HOH A 62 662 63 HOH HOH . C 3 HOH A 63 663 61 HOH HOH . C 3 HOH A 64 664 32 HOH HOH . C 3 HOH A 65 665 28 HOH HOH . C 3 HOH A 66 666 35 HOH HOH . C 3 HOH A 67 667 70 HOH HOH . C 3 HOH A 68 668 57 HOH HOH . C 3 HOH A 69 669 15 HOH HOH . C 3 HOH A 70 670 27 HOH HOH . C 3 HOH A 71 671 72 HOH HOH . C 3 HOH A 72 672 62 HOH HOH . C 3 HOH A 73 673 73 HOH HOH . C 3 HOH A 74 674 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . B 2 36.219 23.665 -8.845 1 67.91 ? N ARG 501 A 1 HETATM 2 C CA ARG . . . B 2 37.454 23.983 -9.546 1 65.94 ? CA ARG 501 A 1 HETATM 3 C C ARG . . . B 2 38.665 23.501 -8.756 1 67.16 ? C ARG 501 A 1 HETATM 4 O O ARG . . . B 2 39.737 23.26 -9.308 1 74.77 ? O ARG 501 A 1 HETATM 5 C CB ARG . . . B 2 37.549 25.477 -9.798 1 42.07 ? CB ARG 501 A 1 HETATM 6 C CG ARG . . . B 2 37.635 26.315 -8.537 1 41.9 ? CG ARG 501 A 1 HETATM 7 C CD ARG . . . B 2 37.383 27.76 -8.908 1 53.27 ? CD ARG 501 A 1 HETATM 8 N NE ARG . . . B 2 37.543 28.652 -7.78 1 55.31 ? NE ARG 501 A 1 HETATM 9 C CZ ARG . . . B 2 36.662 28.768 -6.796 1 45.67 ? CZ ARG 501 A 1 HETATM 10 N NH1 ARG . . . B 2 35.555 28.032 -6.793 1 40.59 ? NH1 ARG 501 A 1 HETATM 11 N NH2 ARG . . . B 2 36.903 29.612 -5.807 1 46.78 ? NH2 ARG 501 A 1 HETATM 12 O OXT ARG . . . B 2 38.598 23.341 -7.543 1 70.24 ? OXT ARG 501 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 12 #