data_5GZV
#
_model_server_result.job_id            uzQZWr2IGkQYveobpRayYQ 
_model_server_result.datetime_utc      '2024-11-18 01:46:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gzv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1503}' 
#
_entry.id    5GZV 
#
_exptl.entry_id    5GZV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GZV 
_cell.length_a            112.989 
_cell.length_b            127.229 
_cell.length_c            161.406 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GZV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G 1 1 
B,D,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG A 3002 NAG 
2 n C NAG 2 C 2 NAG A 3001 NAG 
2 n D NAG 1 D 1 NAG B 1502 NAG 
2 n D NAG 2 D 2 NAG B 1501 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 277 n n 
P O2 PO4 sing 278 n n 
P O3 PO4 sing 279 n n 
P O4 PO4 sing 280 n n 
#
_atom_sites.entry_id                     5GZV 
_atom_sites.fract_transf_matrix[1][1]    0.00885 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00786 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006196 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PO4 A 1 3003 3003 PO4 PO4 . 
F 3 PO4 B 1 1503 1503 PO4 PO4 . 
G 4 HOH A 1 3101 3101 HOH HOH . 
G 4 HOH A 2 3102 3107 HOH HOH . 
G 4 HOH A 3 3103 3103 HOH HOH . 
G 4 HOH A 4 3104 3105 HOH HOH . 
G 4 HOH A 5 3105 3127 HOH HOH . 
G 4 HOH A 6 3106 3102 HOH HOH . 
G 4 HOH A 7 3107 3112 HOH HOH . 
G 4 HOH A 8 3108 3113 HOH HOH . 
G 4 HOH A 9 3109 3109 HOH HOH . 
G 4 HOH A 10 3110 3108 HOH HOH . 
G 4 HOH A 11 3111 3126 HOH HOH . 
G 4 HOH A 12 3112 3117 HOH HOH . 
G 4 HOH A 13 3113 3119 HOH HOH . 
G 4 HOH A 14 3114 3115 HOH HOH . 
G 4 HOH A 15 3115 3106 HOH HOH . 
G 4 HOH A 16 3116 3130 HOH HOH . 
G 4 HOH A 17 3117 3110 HOH HOH . 
G 4 HOH A 18 3118 3116 HOH HOH . 
G 4 HOH A 19 3119 3122 HOH HOH . 
G 4 HOH A 20 3120 3133 HOH HOH . 
G 4 HOH A 21 3121 3121 HOH HOH . 
G 4 HOH A 22 3122 3114 HOH HOH . 
G 4 HOH A 23 3123 3128 HOH HOH . 
G 4 HOH A 24 3124 3104 HOH HOH . 
G 4 HOH A 25 3125 3118 HOH HOH . 
G 4 HOH A 26 3126 3120 HOH HOH . 
G 4 HOH A 27 3127 3137 HOH HOH . 
G 4 HOH A 28 3128 3143 HOH HOH . 
G 4 HOH A 29 3129 3134 HOH HOH . 
G 4 HOH A 30 3130 3111 HOH HOH . 
G 4 HOH A 31 3131 3129 HOH HOH . 
G 4 HOH A 32 3132 3139 HOH HOH . 
G 4 HOH A 33 3133 3124 HOH HOH . 
G 4 HOH A 34 3134 3123 HOH HOH . 
G 4 HOH A 35 3135 3125 HOH HOH . 
G 4 HOH A 36 3136 3142 HOH HOH . 
G 4 HOH A 37 3137 3136 HOH HOH . 
G 4 HOH A 38 3138 3135 HOH HOH . 
G 4 HOH A 39 3139 3138 HOH HOH . 
G 4 HOH A 40 3140 3146 HOH HOH . 
G 4 HOH A 41 3141 3147 HOH HOH . 
G 4 HOH A 42 3142 3151 HOH HOH . 
G 4 HOH A 43 3143 3131 HOH HOH . 
G 4 HOH A 44 3144 3163 HOH HOH . 
G 4 HOH A 45 3145 3144 HOH HOH . 
G 4 HOH A 46 3146 3140 HOH HOH . 
G 4 HOH A 47 3147 3132 HOH HOH . 
G 4 HOH A 48 3148 3167 HOH HOH . 
G 4 HOH A 49 3149 3149 HOH HOH . 
G 4 HOH A 50 3150 3141 HOH HOH . 
G 4 HOH A 51 3151 3156 HOH HOH . 
G 4 HOH A 52 3152 3170 HOH HOH . 
G 4 HOH A 53 3153 3145 HOH HOH . 
G 4 HOH A 54 3154 3171 HOH HOH . 
G 4 HOH A 55 3155 3153 HOH HOH . 
G 4 HOH A 56 3156 3152 HOH HOH . 
G 4 HOH A 57 3157 3166 HOH HOH . 
G 4 HOH A 58 3158 3148 HOH HOH . 
G 4 HOH A 59 3159 3184 HOH HOH . 
G 4 HOH A 60 3160 3158 HOH HOH . 
G 4 HOH A 61 3161 3159 HOH HOH . 
G 4 HOH A 62 3162 3162 HOH HOH . 
G 4 HOH A 63 3163 3155 HOH HOH . 
G 4 HOH A 64 3164 3154 HOH HOH . 
G 4 HOH A 65 3165 3160 HOH HOH . 
G 4 HOH A 66 3166 3169 HOH HOH . 
G 4 HOH A 67 3167 3176 HOH HOH . 
G 4 HOH A 68 3168 3164 HOH HOH . 
G 4 HOH A 69 3169 3175 HOH HOH . 
G 4 HOH A 70 3170 3168 HOH HOH . 
G 4 HOH A 71 3171 3165 HOH HOH . 
G 4 HOH A 72 3172 3172 HOH HOH . 
G 4 HOH A 73 3173 3177 HOH HOH . 
G 4 HOH A 74 3174 3180 HOH HOH . 
G 4 HOH A 75 3175 3179 HOH HOH . 
G 4 HOH A 76 3176 3174 HOH HOH . 
G 4 HOH A 77 3177 3157 HOH HOH . 
G 4 HOH A 78 3178 3178 HOH HOH . 
G 4 HOH A 79 3179 3185 HOH HOH . 
G 4 HOH A 80 3180 3181 HOH HOH . 
G 4 HOH A 81 3181 3182 HOH HOH . 
G 4 HOH A 82 3182 3150 HOH HOH . 
G 4 HOH A 83 3183 3173 HOH HOH . 
G 4 HOH A 84 3184 3187 HOH HOH . 
G 4 HOH A 85 3185 3191 HOH HOH . 
G 4 HOH A 86 3186 3161 HOH HOH . 
G 4 HOH A 87 3187 3186 HOH HOH . 
G 4 HOH A 88 3188 3190 HOH HOH . 
G 4 HOH A 89 3189 3188 HOH HOH . 
G 4 HOH A 90 3190 3183 HOH HOH . 
G 4 HOH A 91 3191 3189 HOH HOH . 
G 4 HOH A 92 3192 3196 HOH HOH . 
G 4 HOH A 93 3193 3195 HOH HOH . 
G 4 HOH A 94 3194 3194 HOH HOH . 
G 4 HOH A 95 3195 3193 HOH HOH . 
G 4 HOH A 96 3196 3192 HOH HOH . 
G 4 HOH A 97 3197 3198 HOH HOH . 
G 4 HOH A 98 3198 3199 HOH HOH . 
G 4 HOH A 99 3199 3197 HOH HOH . 
G 4 HOH A 100 3200 3201 HOH HOH . 
G 4 HOH A 101 3201 3202 HOH HOH . 
G 4 HOH A 102 3202 3200 HOH HOH . 
G 4 HOH A 103 3203 3203 HOH HOH . 
G 4 HOH A 104 3204 3204 HOH HOH . 
G 4 HOH A 105 3205 3205 HOH HOH . 
G 4 HOH A 106 3206 3206 HOH HOH . 
G 4 HOH A 107 3207 3207 HOH HOH . 
G 4 HOH A 108 3208 3209 HOH HOH . 
G 4 HOH A 109 3209 3208 HOH HOH . 
G 4 HOH A 110 3210 3210 HOH HOH . 
G 4 HOH A 111 3211 3212 HOH HOH . 
G 4 HOH A 112 3212 3211 HOH HOH . 
G 4 HOH A 113 3213 3213 HOH HOH . 
G 4 HOH A 114 3214 3214 HOH HOH . 
G 4 HOH A 115 3215 3215 HOH HOH . 
G 4 HOH A 116 3216 3216 HOH HOH . 
G 4 HOH A 117 3217 3217 HOH HOH . 
H 4 HOH B 1 1601 1602 HOH HOH . 
H 4 HOH B 2 1602 1605 HOH HOH . 
H 4 HOH B 3 1603 1603 HOH HOH . 
H 4 HOH B 4 1604 1601 HOH HOH . 
H 4 HOH B 5 1605 1606 HOH HOH . 
H 4 HOH B 6 1606 1610 HOH HOH . 
H 4 HOH B 7 1607 1633 HOH HOH . 
H 4 HOH B 8 1608 1604 HOH HOH . 
H 4 HOH B 9 1609 1612 HOH HOH . 
H 4 HOH B 10 1610 1621 HOH HOH . 
H 4 HOH B 11 1611 1608 HOH HOH . 
H 4 HOH B 12 1612 1607 HOH HOH . 
H 4 HOH B 13 1613 1632 HOH HOH . 
H 4 HOH B 14 1614 1618 HOH HOH . 
H 4 HOH B 15 1615 1616 HOH HOH . 
H 4 HOH B 16 1616 1617 HOH HOH . 
H 4 HOH B 17 1617 1620 HOH HOH . 
H 4 HOH B 18 1618 1609 HOH HOH . 
H 4 HOH B 19 1619 1626 HOH HOH . 
H 4 HOH B 20 1620 1624 HOH HOH . 
H 4 HOH B 21 1621 1629 HOH HOH . 
H 4 HOH B 22 1622 1611 HOH HOH . 
H 4 HOH B 23 1623 1628 HOH HOH . 
H 4 HOH B 24 1624 1634 HOH HOH . 
H 4 HOH B 25 1625 1625 HOH HOH . 
H 4 HOH B 26 1626 1630 HOH HOH . 
H 4 HOH B 27 1627 1613 HOH HOH . 
H 4 HOH B 28 1628 1622 HOH HOH . 
H 4 HOH B 29 1629 1644 HOH HOH . 
H 4 HOH B 30 1630 1623 HOH HOH . 
H 4 HOH B 31 1631 1615 HOH HOH . 
H 4 HOH B 32 1632 1631 HOH HOH . 
H 4 HOH B 33 1633 1619 HOH HOH . 
H 4 HOH B 34 1634 1614 HOH HOH . 
H 4 HOH B 35 1635 1642 HOH HOH . 
H 4 HOH B 36 1636 1638 HOH HOH . 
H 4 HOH B 37 1637 1635 HOH HOH . 
H 4 HOH B 38 1638 1627 HOH HOH . 
H 4 HOH B 39 1639 1636 HOH HOH . 
H 4 HOH B 40 1640 1660 HOH HOH . 
H 4 HOH B 41 1641 1640 HOH HOH . 
H 4 HOH B 42 1642 1659 HOH HOH . 
H 4 HOH B 43 1643 1648 HOH HOH . 
H 4 HOH B 44 1644 1637 HOH HOH . 
H 4 HOH B 45 1645 1639 HOH HOH . 
H 4 HOH B 46 1646 1649 HOH HOH . 
H 4 HOH B 47 1647 1655 HOH HOH . 
H 4 HOH B 48 1648 1646 HOH HOH . 
H 4 HOH B 49 1649 1641 HOH HOH . 
H 4 HOH B 50 1650 1643 HOH HOH . 
H 4 HOH B 51 1651 1650 HOH HOH . 
H 4 HOH B 52 1652 1658 HOH HOH . 
H 4 HOH B 53 1653 1645 HOH HOH . 
H 4 HOH B 54 1654 1654 HOH HOH . 
H 4 HOH B 55 1655 1661 HOH HOH . 
H 4 HOH B 56 1656 1662 HOH HOH . 
H 4 HOH B 57 1657 1653 HOH HOH . 
H 4 HOH B 58 1658 1663 HOH HOH . 
H 4 HOH B 59 1659 1657 HOH HOH . 
H 4 HOH B 60 1660 1647 HOH HOH . 
H 4 HOH B 61 1661 1652 HOH HOH . 
H 4 HOH B 62 1662 1670 HOH HOH . 
H 4 HOH B 63 1663 1651 HOH HOH . 
H 4 HOH B 64 1664 1664 HOH HOH . 
H 4 HOH B 65 1665 1656 HOH HOH . 
H 4 HOH B 66 1666 1667 HOH HOH . 
H 4 HOH B 67 1667 1666 HOH HOH . 
H 4 HOH B 68 1668 1669 HOH HOH . 
H 4 HOH B 69 1669 1668 HOH HOH . 
H 4 HOH B 70 1670 1665 HOH HOH . 
H 4 HOH B 71 1671 1671 HOH HOH . 
H 4 HOH B 72 1672 1672 HOH HOH . 
H 4 HOH B 73 1673 1673 HOH HOH . 
H 4 HOH B 74 1674 1674 HOH HOH . 
H 4 HOH B 75 1675 1677 HOH HOH . 
H 4 HOH B 76 1676 1675 HOH HOH . 
H 4 HOH B 77 1677 1676 HOH HOH . 
H 4 HOH B 78 1678 1678 HOH HOH . 
H 4 HOH B 79 1679 1679 HOH HOH . 
H 4 HOH B 80 1680 1680 HOH HOH . 
H 4 HOH B 81 1681 1681 HOH HOH . 
H 4 HOH B 82 1682 1682 HOH HOH . 
H 4 HOH B 83 1683 1683 HOH HOH . 
H 4 HOH B 84 1684 1684 HOH HOH . 
H 4 HOH B 85 1685 1685 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . F 3 -41.486 -30.092 7.873 1 48.38 ? P PO4 1503 B 1 
HETATM 2 O O1 PO4 . . . F 3 -40.384 -30.242 6.833 1 43.86 ? O1 PO4 1503 B 1 
HETATM 3 O O2 PO4 . . . F 3 -42.55 -29.17 7.296 1 46.5 -1 O2 PO4 1503 B 1 
HETATM 4 O O3 PO4 . . . F 3 -42.132 -31.363 8.401 1 41.05 -1 O3 PO4 1503 B 1 
HETATM 5 O O4 PO4 . . . F 3 -40.864 -29.575 9.146 1 54.49 -1 O4 PO4 1503 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#