data_5H02 # _model_server_result.job_id I-GRGAC53rHZESbKwlwPiw _model_server_result.datetime_utc '2024-12-01 20:53:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5H02 # _exptl.entry_id 5H02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H02 _cell.length_a 51.874 _cell.length_b 120.803 _cell.length_c 131.301 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 296 n n N HN1 SAH sing 297 n n N HN2 SAH sing 298 n n CA CB SAH sing 299 n n CA C SAH sing 300 n n CA HA SAH sing 301 n n CB CG SAH sing 302 n n CB HB1 SAH sing 303 n n CB HB2 SAH sing 304 n n CG SD SAH sing 305 n n CG HG1 SAH sing 306 n n CG HG2 SAH sing 307 n n SD C5' SAH sing 308 n n C O SAH doub 309 n n C OXT SAH sing 310 n n OXT HXT SAH sing 311 n n C5' C4' SAH sing 312 n n C5' "H5'1" SAH sing 313 n n C5' "H5'2" SAH sing 314 n n C4' O4' SAH sing 315 n n C4' C3' SAH sing 316 n n C4' H4' SAH sing 317 n n O4' C1' SAH sing 318 n n C3' O3' SAH sing 319 n n C3' C2' SAH sing 320 n n C3' H3' SAH sing 321 n n O3' HO3' SAH sing 322 n n C2' O2' SAH sing 323 n n C2' C1' SAH sing 324 n n C2' H2' SAH sing 325 n n O2' HO2' SAH sing 326 n n C1' N9 SAH sing 327 n n C1' H1' SAH sing 328 n n N9 C8 SAH sing 329 n y N9 C4 SAH sing 330 n y C8 N7 SAH doub 331 n y C8 H8 SAH sing 332 n n N7 C5 SAH sing 333 n y C5 C6 SAH sing 334 n y C5 C4 SAH doub 335 n y C6 N6 SAH sing 336 n n C6 N1 SAH doub 337 n y N6 HN61 SAH sing 338 n n N6 HN62 SAH sing 339 n n N1 C2 SAH sing 340 n y C2 N3 SAH doub 341 n y C2 H2 SAH sing 342 n n N3 C4 SAH sing 343 n y # _atom_sites.entry_id 5H02 _atom_sites.fract_transf_matrix[1][1] 0.019277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 BET A 1 302 1 BET BET . D 3 BET A 1 303 2 BET BET . E 4 HOH A 1 401 158 HOH HOH . E 4 HOH A 2 402 92 HOH HOH . E 4 HOH A 3 403 95 HOH HOH . E 4 HOH A 4 404 83 HOH HOH . E 4 HOH A 5 405 4 HOH HOH . E 4 HOH A 6 406 87 HOH HOH . E 4 HOH A 7 407 25 HOH HOH . E 4 HOH A 8 408 38 HOH HOH . E 4 HOH A 9 409 71 HOH HOH . E 4 HOH A 10 410 173 HOH HOH . E 4 HOH A 11 411 55 HOH HOH . E 4 HOH A 12 412 77 HOH HOH . E 4 HOH A 13 413 45 HOH HOH . E 4 HOH A 14 414 84 HOH HOH . E 4 HOH A 15 415 164 HOH HOH . E 4 HOH A 16 416 97 HOH HOH . E 4 HOH A 17 417 72 HOH HOH . E 4 HOH A 18 418 28 HOH HOH . E 4 HOH A 19 419 56 HOH HOH . E 4 HOH A 20 420 128 HOH HOH . E 4 HOH A 21 421 60 HOH HOH . E 4 HOH A 22 422 29 HOH HOH . E 4 HOH A 23 423 47 HOH HOH . E 4 HOH A 24 424 107 HOH HOH . E 4 HOH A 25 425 116 HOH HOH . E 4 HOH A 26 426 22 HOH HOH . E 4 HOH A 27 427 73 HOH HOH . E 4 HOH A 28 428 57 HOH HOH . E 4 HOH A 29 429 143 HOH HOH . E 4 HOH A 30 430 7 HOH HOH . E 4 HOH A 31 431 1 HOH HOH . E 4 HOH A 32 432 16 HOH HOH . E 4 HOH A 33 433 161 HOH HOH . E 4 HOH A 34 434 43 HOH HOH . E 4 HOH A 35 435 35 HOH HOH . E 4 HOH A 36 436 52 HOH HOH . E 4 HOH A 37 437 23 HOH HOH . E 4 HOH A 38 438 130 HOH HOH . E 4 HOH A 39 439 14 HOH HOH . E 4 HOH A 40 440 9 HOH HOH . E 4 HOH A 41 441 24 HOH HOH . E 4 HOH A 42 442 6 HOH HOH . E 4 HOH A 43 443 40 HOH HOH . E 4 HOH A 44 444 94 HOH HOH . E 4 HOH A 45 445 96 HOH HOH . E 4 HOH A 46 446 134 HOH HOH . E 4 HOH A 47 447 120 HOH HOH . E 4 HOH A 48 448 135 HOH HOH . E 4 HOH A 49 449 105 HOH HOH . E 4 HOH A 50 450 12 HOH HOH . E 4 HOH A 51 451 156 HOH HOH . E 4 HOH A 52 452 17 HOH HOH . E 4 HOH A 53 453 79 HOH HOH . E 4 HOH A 54 454 70 HOH HOH . E 4 HOH A 55 455 91 HOH HOH . E 4 HOH A 56 456 2 HOH HOH . E 4 HOH A 57 457 53 HOH HOH . E 4 HOH A 58 458 117 HOH HOH . E 4 HOH A 59 459 21 HOH HOH . E 4 HOH A 60 460 20 HOH HOH . E 4 HOH A 61 461 8 HOH HOH . E 4 HOH A 62 462 110 HOH HOH . E 4 HOH A 63 463 100 HOH HOH . E 4 HOH A 64 464 31 HOH HOH . E 4 HOH A 65 465 32 HOH HOH . E 4 HOH A 66 466 10 HOH HOH . E 4 HOH A 67 467 113 HOH HOH . E 4 HOH A 68 468 93 HOH HOH . E 4 HOH A 69 469 19 HOH HOH . E 4 HOH A 70 470 51 HOH HOH . E 4 HOH A 71 471 104 HOH HOH . E 4 HOH A 72 472 30 HOH HOH . E 4 HOH A 73 473 3 HOH HOH . E 4 HOH A 74 474 75 HOH HOH . E 4 HOH A 75 475 69 HOH HOH . E 4 HOH A 76 476 124 HOH HOH . E 4 HOH A 77 477 112 HOH HOH . E 4 HOH A 78 478 5 HOH HOH . E 4 HOH A 79 479 153 HOH HOH . E 4 HOH A 80 480 15 HOH HOH . E 4 HOH A 81 481 65 HOH HOH . E 4 HOH A 82 482 89 HOH HOH . E 4 HOH A 83 483 141 HOH HOH . E 4 HOH A 84 484 81 HOH HOH . E 4 HOH A 85 485 18 HOH HOH . E 4 HOH A 86 486 37 HOH HOH . E 4 HOH A 87 487 36 HOH HOH . E 4 HOH A 88 488 121 HOH HOH . E 4 HOH A 89 489 64 HOH HOH . E 4 HOH A 90 490 142 HOH HOH . E 4 HOH A 91 491 11 HOH HOH . E 4 HOH A 92 492 170 HOH HOH . E 4 HOH A 93 493 154 HOH HOH . E 4 HOH A 94 494 58 HOH HOH . E 4 HOH A 95 495 13 HOH HOH . E 4 HOH A 96 496 98 HOH HOH . E 4 HOH A 97 497 63 HOH HOH . E 4 HOH A 98 498 157 HOH HOH . E 4 HOH A 99 499 115 HOH HOH . E 4 HOH A 100 500 41 HOH HOH . E 4 HOH A 101 501 144 HOH HOH . E 4 HOH A 102 502 26 HOH HOH . E 4 HOH A 103 503 160 HOH HOH . E 4 HOH A 104 504 133 HOH HOH . E 4 HOH A 105 505 165 HOH HOH . E 4 HOH A 106 506 49 HOH HOH . E 4 HOH A 107 507 61 HOH HOH . E 4 HOH A 108 508 99 HOH HOH . E 4 HOH A 109 509 106 HOH HOH . E 4 HOH A 110 510 114 HOH HOH . E 4 HOH A 111 511 27 HOH HOH . E 4 HOH A 112 512 44 HOH HOH . E 4 HOH A 113 513 39 HOH HOH . E 4 HOH A 114 514 50 HOH HOH . E 4 HOH A 115 515 62 HOH HOH . E 4 HOH A 116 516 78 HOH HOH . E 4 HOH A 117 517 33 HOH HOH . E 4 HOH A 118 518 109 HOH HOH . E 4 HOH A 119 519 168 HOH HOH . E 4 HOH A 120 520 67 HOH HOH . E 4 HOH A 121 521 74 HOH HOH . E 4 HOH A 122 522 68 HOH HOH . E 4 HOH A 123 523 103 HOH HOH . E 4 HOH A 124 524 147 HOH HOH . E 4 HOH A 125 525 108 HOH HOH . E 4 HOH A 126 526 66 HOH HOH . E 4 HOH A 127 527 48 HOH HOH . E 4 HOH A 128 528 126 HOH HOH . E 4 HOH A 129 529 82 HOH HOH . E 4 HOH A 130 530 59 HOH HOH . E 4 HOH A 131 531 148 HOH HOH . E 4 HOH A 132 532 46 HOH HOH . E 4 HOH A 133 533 85 HOH HOH . E 4 HOH A 134 534 140 HOH HOH . E 4 HOH A 135 535 149 HOH HOH . E 4 HOH A 136 536 145 HOH HOH . E 4 HOH A 137 537 118 HOH HOH . E 4 HOH A 138 538 163 HOH HOH . E 4 HOH A 139 539 171 HOH HOH . E 4 HOH A 140 540 122 HOH HOH . E 4 HOH A 141 541 136 HOH HOH . E 4 HOH A 142 542 102 HOH HOH . E 4 HOH A 143 543 152 HOH HOH . E 4 HOH A 144 544 150 HOH HOH . E 4 HOH A 145 545 129 HOH HOH . E 4 HOH A 146 546 166 HOH HOH . E 4 HOH A 147 547 146 HOH HOH . E 4 HOH A 148 548 119 HOH HOH . E 4 HOH A 149 549 76 HOH HOH . E 4 HOH A 150 550 167 HOH HOH . E 4 HOH A 151 551 159 HOH HOH . E 4 HOH A 152 552 155 HOH HOH . E 4 HOH A 153 553 88 HOH HOH . E 4 HOH A 154 554 54 HOH HOH . E 4 HOH A 155 555 162 HOH HOH . E 4 HOH A 156 556 127 HOH HOH . E 4 HOH A 157 557 111 HOH HOH . E 4 HOH A 158 558 90 HOH HOH . E 4 HOH A 159 559 101 HOH HOH . E 4 HOH A 160 560 172 HOH HOH . E 4 HOH A 161 561 125 HOH HOH . E 4 HOH A 162 562 151 HOH HOH . E 4 HOH A 163 563 139 HOH HOH . E 4 HOH A 164 564 86 HOH HOH . E 4 HOH A 165 565 137 HOH HOH . E 4 HOH A 166 566 132 HOH HOH . E 4 HOH A 167 567 123 HOH HOH . E 4 HOH A 168 568 34 HOH HOH . E 4 HOH A 169 569 131 HOH HOH . E 4 HOH A 170 570 169 HOH HOH . E 4 HOH A 171 571 42 HOH HOH . E 4 HOH A 172 572 80 HOH HOH . E 4 HOH A 173 573 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 57.066 44.227 153.12 1 26.74 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 56.592 44.534 154.445 1 35.95 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 55.119 44.267 154.667 1 42.36 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 54.716 42.839 154.455 1 40.51 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 52.968 42.64 154.853 1 36.59 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 57.448 43.794 155.468 1 41.84 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 58.213 42.867 155.079 1 40.74 -1 O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 57.399 44.129 156.71 1 39.33 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 52.014 42.401 153.348 1 34.41 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 51.376 43.683 152.85 1 31.13 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 50.84 43.426 151.584 1 34.9 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 50.25 44.138 153.74 1 29 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 50.523 45.383 154.229 1 29.82 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 49.007 44.1 152.889 1 28.36 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 48.081 45.115 153.092 1 24.11 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 49.624 44.105 151.501 1 30.56 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 48.766 43.494 150.482 1 31.74 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 48.297 42.232 150.47 1 37.39 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 47.549 42.026 149.38 1 31.82 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 47.525 43.16 148.643 1 27.1 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 46.936 43.53 147.456 1 31.73 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 46.139 42.608 146.736 1 30.84 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 47.107 44.791 146.98 1 29.9 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 47.847 45.71 147.636 1 27.1 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 48.439 45.382 148.803 1 26.62 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 48.295 44.126 149.326 1 31.48 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #