data_5H13
#
_model_server_result.job_id            sJ_rSz3v8GXYzla6TiLZyQ 
_model_server_result.datetime_utc      '2024-12-29 17:53:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h13 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    5H13 
#
_exptl.entry_id    5H13 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5H13 
_cell.length_a            150.67 
_cell.length_b            45.97 
_cell.length_c            51.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H13 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 327 A GLU 392 1_555 C PR PR . A PR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc2 A O GLU 327 A GLU 392 1_555 C PR PR . A PR 502 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc3 A OE2 GLU 329 A GLU 394 1_555 C PR PR . A PR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc4 A OE2 GLU 329 A GLU 394 1_555 C PR PR . A PR 502 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc5 C PR PR . A PR 502 1_555 E O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc6 C PR PR . A PR 502 1_555 E O HOH . A HOH 608 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc7 C PR PR . A PR 502 1_555 E O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc8 C PR PR . A PR 502 1_555 E O HOH . A HOH 635 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5H13 
_atom_sites.fract_transf_matrix[1][1]    0.006637 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021753 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 1 GOL GOL . 
C 3 PR A 1 502 1 PR PR . 
D 4 LQA A 1 503 1 LQA LI1 . 
E 5 HOH A 1 601 62 HOH HOH . 
E 5 HOH A 2 602 33 HOH HOH . 
E 5 HOH A 3 603 16 HOH HOH . 
E 5 HOH A 4 604 3 HOH HOH . 
E 5 HOH A 5 605 12 HOH HOH . 
E 5 HOH A 6 606 37 HOH HOH . 
E 5 HOH A 7 607 14 HOH HOH . 
E 5 HOH A 8 608 22 HOH HOH . 
E 5 HOH A 9 609 55 HOH HOH . 
E 5 HOH A 10 610 6 HOH HOH . 
E 5 HOH A 11 611 13 HOH HOH . 
E 5 HOH A 12 612 10 HOH HOH . 
E 5 HOH A 13 613 17 HOH HOH . 
E 5 HOH A 14 614 76 HOH HOH . 
E 5 HOH A 15 615 24 HOH HOH . 
E 5 HOH A 16 616 64 HOH HOH . 
E 5 HOH A 17 617 27 HOH HOH . 
E 5 HOH A 18 618 30 HOH HOH . 
E 5 HOH A 19 619 40 HOH HOH . 
E 5 HOH A 20 620 21 HOH HOH . 
E 5 HOH A 21 621 7 HOH HOH . 
E 5 HOH A 22 622 72 HOH HOH . 
E 5 HOH A 23 623 46 HOH HOH . 
E 5 HOH A 24 624 57 HOH HOH . 
E 5 HOH A 25 625 34 HOH HOH . 
E 5 HOH A 26 626 61 HOH HOH . 
E 5 HOH A 27 627 92 HOH HOH . 
E 5 HOH A 28 628 66 HOH HOH . 
E 5 HOH A 29 629 9 HOH HOH . 
E 5 HOH A 30 630 23 HOH HOH . 
E 5 HOH A 31 631 82 HOH HOH . 
E 5 HOH A 32 632 38 HOH HOH . 
E 5 HOH A 33 633 65 HOH HOH . 
E 5 HOH A 34 634 47 HOH HOH . 
E 5 HOH A 35 635 96 HOH HOH . 
E 5 HOH A 36 636 26 HOH HOH . 
E 5 HOH A 37 637 58 HOH HOH . 
E 5 HOH A 38 638 29 HOH HOH . 
E 5 HOH A 39 639 35 HOH HOH . 
E 5 HOH A 40 640 1 HOH HOH . 
E 5 HOH A 41 641 70 HOH HOH . 
E 5 HOH A 42 642 4 HOH HOH . 
E 5 HOH A 43 643 48 HOH HOH . 
E 5 HOH A 44 644 32 HOH HOH . 
E 5 HOH A 45 645 2 HOH HOH . 
E 5 HOH A 46 646 20 HOH HOH . 
E 5 HOH A 47 647 39 HOH HOH . 
E 5 HOH A 48 648 5 HOH HOH . 
E 5 HOH A 49 649 93 HOH HOH . 
E 5 HOH A 50 650 11 HOH HOH . 
E 5 HOH A 51 651 19 HOH HOH . 
E 5 HOH A 52 652 18 HOH HOH . 
E 5 HOH A 53 653 74 HOH HOH . 
E 5 HOH A 54 654 71 HOH HOH . 
E 5 HOH A 55 655 86 HOH HOH . 
E 5 HOH A 56 656 53 HOH HOH . 
E 5 HOH A 57 657 54 HOH HOH . 
E 5 HOH A 58 658 67 HOH HOH . 
E 5 HOH A 59 659 68 HOH HOH . 
E 5 HOH A 60 660 25 HOH HOH . 
E 5 HOH A 61 661 88 HOH HOH . 
E 5 HOH A 62 662 52 HOH HOH . 
E 5 HOH A 63 663 15 HOH HOH . 
E 5 HOH A 64 664 49 HOH HOH . 
E 5 HOH A 65 665 59 HOH HOH . 
E 5 HOH A 66 666 78 HOH HOH . 
E 5 HOH A 67 667 28 HOH HOH . 
E 5 HOH A 68 668 77 HOH HOH . 
E 5 HOH A 69 669 56 HOH HOH . 
E 5 HOH A 70 670 43 HOH HOH . 
E 5 HOH A 71 671 41 HOH HOH . 
E 5 HOH A 72 672 8 HOH HOH . 
E 5 HOH A 73 673 51 HOH HOH . 
E 5 HOH A 74 674 83 HOH HOH . 
E 5 HOH A 75 675 85 HOH HOH . 
E 5 HOH A 76 676 42 HOH HOH . 
E 5 HOH A 77 677 81 HOH HOH . 
E 5 HOH A 78 678 36 HOH HOH . 
E 5 HOH A 79 679 31 HOH HOH . 
E 5 HOH A 80 680 69 HOH HOH . 
E 5 HOH A 81 681 91 HOH HOH . 
E 5 HOH A 82 682 89 HOH HOH . 
E 5 HOH A 83 683 80 HOH HOH . 
E 5 HOH A 84 684 87 HOH HOH . 
E 5 HOH A 85 685 94 HOH HOH . 
E 5 HOH A 86 686 50 HOH HOH . 
E 5 HOH A 87 687 90 HOH HOH . 
E 5 HOH A 88 688 79 HOH HOH . 
E 5 HOH A 89 689 73 HOH HOH . 
E 5 HOH A 90 690 75 HOH HOH . 
E 5 HOH A 91 691 44 HOH HOH . 
E 5 HOH A 92 692 84 HOH HOH . 
E 5 HOH A 93 693 95 HOH HOH . 
E 5 HOH A 94 694 60 HOH HOH . 
E 5 HOH A 95 695 45 HOH HOH . 
E 5 HOH A 96 696 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 10.317 5.89 -10.791 1 64.03 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . B 2 9.707 6.923 -11.551 1 65.48 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . B 2 10.021 4.536 -11.392 1 62.92 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . B 2 8.606 4.324 -11.419 1 64 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . B 2 10.679 3.407 -10.633 1 61.64 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . B 2 12.066 3.645 -10.443 1 61.34 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#