data_5H13 # _model_server_result.job_id 2s1PqWQZ79L9WcNpw593rQ _model_server_result.datetime_utc '2024-12-29 18:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5H13 # _exptl.entry_id 5H13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.468 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-azanylidene-2-(3-methoxy-4-propan-2-yloxy-phenyl)-6,7-dihydro-[1,3]benzodioxolo[6,5-a]quinolizine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H13 _cell.length_a 150.67 _cell.length_b 45.97 _cell.length_c 51.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 327 A GLU 392 1_555 C PR PR . A PR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc2 A O GLU 327 A GLU 392 1_555 C PR PR . A PR 502 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 A OE2 GLU 329 A GLU 394 1_555 C PR PR . A PR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 A OE2 GLU 329 A GLU 394 1_555 C PR PR . A PR 502 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 C PR PR . A PR 502 1_555 E O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc6 C PR PR . A PR 502 1_555 E O HOH . A HOH 608 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc7 C PR PR . A PR 502 1_555 E O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc8 C PR PR . A PR 502 1_555 E O HOH . A HOH 635 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C25 H23 N3 O4' _chem_comp.formula_weight 429.468 _chem_comp.id LQA _chem_comp.mon_nstd_flag . _chem_comp.name 4-azanylidene-2-(3-methoxy-4-propan-2-yloxy-phenyl)-6,7-dihydro-[1,3]benzodioxolo[6,5-a]quinolizine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O22 LQA sing 207 n n C25 O21 LQA sing 208 n n O22 C14 LQA sing 209 n n C14 C18 LQA doub 210 n y C14 C13 LQA sing 211 n y O21 C13 LQA sing 212 n n C18 C9 LQA sing 213 n y C12 C24 LQA sing 214 n n C12 N3 LQA sing 215 n n C13 C11 LQA doub 216 n y C9 C24 LQA sing 217 n n C9 C7 LQA doub 218 n y N16 C4 LQA doub 219 n n C11 C7 LQA sing 220 n y N3 C4 LQA sing 221 n n N3 C2 LQA sing 222 n n C7 C2 LQA sing 223 n n C4 C1 LQA sing 224 n n C2 C6 LQA doub 225 n n C1 C10 LQA sing 226 n n C1 C5 LQA doub 227 n n C6 C5 LQA sing 228 n n C10 N15 LQA trip 229 n n C5 C8 LQA sing 230 n n C26 C8 LQA sing 231 n y C26 C27 LQA doub 232 n y C8 C19 LQA doub 233 n y C27 C17 LQA sing 234 n y C19 C20 LQA sing 235 n y C17 C20 LQA doub 236 n y C17 O23 LQA sing 237 n n C20 O28 LQA sing 238 n n O23 C29 LQA sing 239 n n C29 C32 LQA sing 240 n n C29 C31 LQA sing 241 n n O28 C30 LQA sing 242 n n C11 H1 LQA sing 243 n n C12 H2 LQA sing 244 n n C12 H3 LQA sing 245 n n C18 H4 LQA sing 246 n n C19 H5 LQA sing 247 n n C24 H6 LQA sing 248 n n C24 H7 LQA sing 249 n n C25 H8 LQA sing 250 n n C25 H9 LQA sing 251 n n C26 H10 LQA sing 252 n n C27 H11 LQA sing 253 n n C29 H12 LQA sing 254 n n C30 H13 LQA sing 255 n n C30 H14 LQA sing 256 n n C30 H15 LQA sing 257 n n C6 H16 LQA sing 258 n n N16 H17 LQA sing 259 n n C31 H19 LQA sing 260 n n C31 H20 LQA sing 261 n n C31 H21 LQA sing 262 n n C32 H22 LQA sing 263 n n C32 H23 LQA sing 264 n n C32 H24 LQA sing 265 n n # _atom_sites.entry_id 5H13 _atom_sites.fract_transf_matrix[1][1] 0.006637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 PR A 1 502 1 PR PR . D 4 LQA A 1 503 1 LQA LI1 . E 5 HOH A 1 601 62 HOH HOH . E 5 HOH A 2 602 33 HOH HOH . E 5 HOH A 3 603 16 HOH HOH . E 5 HOH A 4 604 3 HOH HOH . E 5 HOH A 5 605 12 HOH HOH . E 5 HOH A 6 606 37 HOH HOH . E 5 HOH A 7 607 14 HOH HOH . E 5 HOH A 8 608 22 HOH HOH . E 5 HOH A 9 609 55 HOH HOH . E 5 HOH A 10 610 6 HOH HOH . E 5 HOH A 11 611 13 HOH HOH . E 5 HOH A 12 612 10 HOH HOH . E 5 HOH A 13 613 17 HOH HOH . E 5 HOH A 14 614 76 HOH HOH . E 5 HOH A 15 615 24 HOH HOH . E 5 HOH A 16 616 64 HOH HOH . E 5 HOH A 17 617 27 HOH HOH . E 5 HOH A 18 618 30 HOH HOH . E 5 HOH A 19 619 40 HOH HOH . E 5 HOH A 20 620 21 HOH HOH . E 5 HOH A 21 621 7 HOH HOH . E 5 HOH A 22 622 72 HOH HOH . E 5 HOH A 23 623 46 HOH HOH . E 5 HOH A 24 624 57 HOH HOH . E 5 HOH A 25 625 34 HOH HOH . E 5 HOH A 26 626 61 HOH HOH . E 5 HOH A 27 627 92 HOH HOH . E 5 HOH A 28 628 66 HOH HOH . E 5 HOH A 29 629 9 HOH HOH . E 5 HOH A 30 630 23 HOH HOH . E 5 HOH A 31 631 82 HOH HOH . E 5 HOH A 32 632 38 HOH HOH . E 5 HOH A 33 633 65 HOH HOH . E 5 HOH A 34 634 47 HOH HOH . E 5 HOH A 35 635 96 HOH HOH . E 5 HOH A 36 636 26 HOH HOH . E 5 HOH A 37 637 58 HOH HOH . E 5 HOH A 38 638 29 HOH HOH . E 5 HOH A 39 639 35 HOH HOH . E 5 HOH A 40 640 1 HOH HOH . E 5 HOH A 41 641 70 HOH HOH . E 5 HOH A 42 642 4 HOH HOH . E 5 HOH A 43 643 48 HOH HOH . E 5 HOH A 44 644 32 HOH HOH . E 5 HOH A 45 645 2 HOH HOH . E 5 HOH A 46 646 20 HOH HOH . E 5 HOH A 47 647 39 HOH HOH . E 5 HOH A 48 648 5 HOH HOH . E 5 HOH A 49 649 93 HOH HOH . E 5 HOH A 50 650 11 HOH HOH . E 5 HOH A 51 651 19 HOH HOH . E 5 HOH A 52 652 18 HOH HOH . E 5 HOH A 53 653 74 HOH HOH . E 5 HOH A 54 654 71 HOH HOH . E 5 HOH A 55 655 86 HOH HOH . E 5 HOH A 56 656 53 HOH HOH . E 5 HOH A 57 657 54 HOH HOH . E 5 HOH A 58 658 67 HOH HOH . E 5 HOH A 59 659 68 HOH HOH . E 5 HOH A 60 660 25 HOH HOH . E 5 HOH A 61 661 88 HOH HOH . E 5 HOH A 62 662 52 HOH HOH . E 5 HOH A 63 663 15 HOH HOH . E 5 HOH A 64 664 49 HOH HOH . E 5 HOH A 65 665 59 HOH HOH . E 5 HOH A 66 666 78 HOH HOH . E 5 HOH A 67 667 28 HOH HOH . E 5 HOH A 68 668 77 HOH HOH . E 5 HOH A 69 669 56 HOH HOH . E 5 HOH A 70 670 43 HOH HOH . E 5 HOH A 71 671 41 HOH HOH . E 5 HOH A 72 672 8 HOH HOH . E 5 HOH A 73 673 51 HOH HOH . E 5 HOH A 74 674 83 HOH HOH . E 5 HOH A 75 675 85 HOH HOH . E 5 HOH A 76 676 42 HOH HOH . E 5 HOH A 77 677 81 HOH HOH . E 5 HOH A 78 678 36 HOH HOH . E 5 HOH A 79 679 31 HOH HOH . E 5 HOH A 80 680 69 HOH HOH . E 5 HOH A 81 681 91 HOH HOH . E 5 HOH A 82 682 89 HOH HOH . E 5 HOH A 83 683 80 HOH HOH . E 5 HOH A 84 684 87 HOH HOH . E 5 HOH A 85 685 94 HOH HOH . E 5 HOH A 86 686 50 HOH HOH . E 5 HOH A 87 687 90 HOH HOH . E 5 HOH A 88 688 79 HOH HOH . E 5 HOH A 89 689 73 HOH HOH . E 5 HOH A 90 690 75 HOH HOH . E 5 HOH A 91 691 44 HOH HOH . E 5 HOH A 92 692 84 HOH HOH . E 5 HOH A 93 693 95 HOH HOH . E 5 HOH A 94 694 60 HOH HOH . E 5 HOH A 95 695 45 HOH HOH . E 5 HOH A 96 696 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LQA . . . D 4 30.689 13.11 10.288 1 39.88 ? C1 LQA 503 A 1 HETATM 2 C C2 LQA . . . D 4 28.204 11.943 9.81 1 31.88 ? C2 LQA 503 A 1 HETATM 3 C C11 LQA . . . D 4 25.676 12.195 9.364 1 39.79 ? C11 LQA 503 A 1 HETATM 4 C C12 LQA . . . D 4 29.224 9.877 8.987 1 33.58 ? C12 LQA 503 A 1 HETATM 5 C C13 LQA . . . D 4 24.468 11.595 9.014 1 40.8 ? C13 LQA 503 A 1 HETATM 6 C C14 LQA . . . D 4 24.37 10.245 8.786 1 40.38 ? C14 LQA 503 A 1 HETATM 7 C C17 LQA . . . D 4 29.813 17.392 13.054 1 53.17 ? C17 LQA 503 A 1 HETATM 8 C C18 LQA . . . D 4 25.479 9.4 8.914 1 39.73 ? C18 LQA 503 A 1 HETATM 9 C C19 LQA . . . D 4 30.353 15.089 12.599 1 49.33 ? C19 LQA 503 A 1 HETATM 10 C C20 LQA . . . D 4 30.514 16.227 13.402 1 50.58 ? C20 LQA 503 A 1 HETATM 11 C C24 LQA . . . D 4 27.948 9.114 9.415 1 35.69 ? C24 LQA 503 A 1 HETATM 12 C C25 LQA . . . D 4 22.445 11.161 8.326 1 38.65 ? C25 LQA 503 A 1 HETATM 13 C C26 LQA . . . D 4 28.936 16.284 11.022 1 48.5 ? C26 LQA 503 A 1 HETATM 14 C C27 LQA . . . D 4 29.03 17.425 11.862 1 52.12 ? C27 LQA 503 A 1 HETATM 15 C C29 LQA . . . D 4 29.154 19.598 14.176 1 57.88 ? C29 LQA 503 A 1 HETATM 16 C C30 LQA . . . D 4 32.283 15.216 14.903 1 47.91 ? C30 LQA 503 A 1 HETATM 17 N N3 LQA . . . D 4 29.314 11.259 9.494 1 31.32 ? N3 LQA 503 A 1 HETATM 18 C C4 LQA . . . D 4 30.53 11.791 9.633 1 36.54 ? C4 LQA 503 A 1 HETATM 19 C C5 LQA . . . D 4 29.586 13.809 10.62 1 40.31 ? C5 LQA 503 A 1 HETATM 20 C C6 LQA . . . D 4 28.285 13.18 10.344 1 35.08 ? C6 LQA 503 A 1 HETATM 21 C C7 LQA . . . D 4 26.819 11.378 9.516 1 36.89 ? C7 LQA 503 A 1 HETATM 22 C C8 LQA . . . D 4 29.633 15.115 11.392 1 46.45 ? C8 LQA 503 A 1 HETATM 23 C C9 LQA . . . D 4 26.712 9.996 9.232 1 37.42 ? C9 LQA 503 A 1 HETATM 24 C C10 LQA . . . D 4 32.021 13.625 10.495 1 45.41 ? C10 LQA 503 A 1 HETATM 25 N N15 LQA . . . D 4 33.09 14.038 10.635 1 50.34 ? N15 LQA 503 A 1 HETATM 26 N N16 LQA . . . D 4 31.618 11.23 9.266 1 37.59 ? N16 LQA 503 A 1 HETATM 27 O O21 LQA . . . D 4 23.26 12.249 8.884 1 42.85 ? O21 LQA 503 A 1 HETATM 28 O O22 LQA . . . D 4 23.077 9.853 8.496 1 40.34 ? O22 LQA 503 A 1 HETATM 29 O O23 LQA . . . D 4 30.013 18.467 13.937 1 56.93 ? O23 LQA 503 A 1 HETATM 30 O O28 LQA . . . D 4 31.306 16.226 14.572 1 49.51 ? O28 LQA 503 A 1 HETATM 31 C C31 LQA . . . D 4 28.067 19.218 15.211 1 58.98 ? C31 LQA 503 A 1 HETATM 32 C C32 LQA . . . D 4 30.085 20.661 14.816 1 56 ? C32 LQA 503 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 32 #