data_5H16 # _model_server_result.job_id 6Jh4YQTA0YC-VgY2k4-AZg _model_server_result.datetime_utc '2024-11-21 21:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 5H16 # _exptl.entry_id 5H16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H16 _cell.length_a 78.59 _cell.length_b 109.813 _cell.length_c 121.797 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5H16 _atom_sites.fract_transf_matrix[1][1] 0.012724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CIT A 1 201 1 CIT CIT . H 2 CIT B 1 201 2 CIT CIT . I 2 CIT C 1 201 3 CIT CIT . J 2 CIT D 1 201 4 CIT CIT . K 2 CIT E 1 201 5 CIT CIT . L 2 CIT F 1 201 6 CIT CIT . M 3 HOH A 1 301 114 HOH HOH . M 3 HOH A 2 302 94 HOH HOH . M 3 HOH A 3 303 91 HOH HOH . M 3 HOH A 4 304 62 HOH HOH . M 3 HOH A 5 305 41 HOH HOH . M 3 HOH A 6 306 93 HOH HOH . M 3 HOH A 7 307 56 HOH HOH . M 3 HOH A 8 308 45 HOH HOH . M 3 HOH A 9 309 37 HOH HOH . M 3 HOH A 10 310 8 HOH HOH . M 3 HOH A 11 311 44 HOH HOH . M 3 HOH A 12 312 69 HOH HOH . M 3 HOH A 13 313 32 HOH HOH . M 3 HOH A 14 314 4 HOH HOH . M 3 HOH A 15 315 50 HOH HOH . M 3 HOH A 16 316 84 HOH HOH . M 3 HOH A 17 317 38 HOH HOH . M 3 HOH A 18 318 128 HOH HOH . M 3 HOH A 19 319 40 HOH HOH . M 3 HOH A 20 320 111 HOH HOH . M 3 HOH A 21 321 47 HOH HOH . M 3 HOH A 22 322 13 HOH HOH . M 3 HOH A 23 323 76 HOH HOH . M 3 HOH A 24 324 30 HOH HOH . M 3 HOH A 25 325 14 HOH HOH . M 3 HOH A 26 326 99 HOH HOH . M 3 HOH A 27 327 95 HOH HOH . N 3 HOH B 1 301 90 HOH HOH . N 3 HOH B 2 302 89 HOH HOH . N 3 HOH B 3 303 20 HOH HOH . N 3 HOH B 4 304 2 HOH HOH . N 3 HOH B 5 305 18 HOH HOH . N 3 HOH B 6 306 21 HOH HOH . N 3 HOH B 7 307 65 HOH HOH . N 3 HOH B 8 308 26 HOH HOH . N 3 HOH B 9 309 108 HOH HOH . N 3 HOH B 10 310 12 HOH HOH . N 3 HOH B 11 311 19 HOH HOH . N 3 HOH B 12 312 112 HOH HOH . O 3 HOH C 1 301 27 HOH HOH . O 3 HOH C 2 302 116 HOH HOH . O 3 HOH C 3 303 36 HOH HOH . O 3 HOH C 4 304 124 HOH HOH . O 3 HOH C 5 305 105 HOH HOH . O 3 HOH C 6 306 58 HOH HOH . O 3 HOH C 7 307 55 HOH HOH . O 3 HOH C 8 308 1 HOH HOH . O 3 HOH C 9 309 35 HOH HOH . O 3 HOH C 10 310 107 HOH HOH . O 3 HOH C 11 311 34 HOH HOH . O 3 HOH C 12 312 43 HOH HOH . O 3 HOH C 13 313 92 HOH HOH . O 3 HOH C 14 314 100 HOH HOH . O 3 HOH C 15 315 6 HOH HOH . O 3 HOH C 16 316 97 HOH HOH . O 3 HOH C 17 317 75 HOH HOH . O 3 HOH C 18 318 49 HOH HOH . O 3 HOH C 19 319 71 HOH HOH . O 3 HOH C 20 320 106 HOH HOH . O 3 HOH C 21 321 115 HOH HOH . O 3 HOH C 22 322 54 HOH HOH . P 3 HOH D 1 301 81 HOH HOH . P 3 HOH D 2 302 24 HOH HOH . P 3 HOH D 3 303 7 HOH HOH . P 3 HOH D 4 304 29 HOH HOH . P 3 HOH D 5 305 104 HOH HOH . P 3 HOH D 6 306 117 HOH HOH . P 3 HOH D 7 307 88 HOH HOH . P 3 HOH D 8 308 53 HOH HOH . P 3 HOH D 9 309 109 HOH HOH . P 3 HOH D 10 310 87 HOH HOH . P 3 HOH D 11 311 67 HOH HOH . P 3 HOH D 12 312 59 HOH HOH . P 3 HOH D 13 313 28 HOH HOH . P 3 HOH D 14 314 52 HOH HOH . P 3 HOH D 15 315 125 HOH HOH . P 3 HOH D 16 316 68 HOH HOH . P 3 HOH D 17 317 51 HOH HOH . P 3 HOH D 18 318 86 HOH HOH . P 3 HOH D 19 319 101 HOH HOH . P 3 HOH D 20 320 102 HOH HOH . P 3 HOH D 21 321 96 HOH HOH . Q 3 HOH E 1 301 121 HOH HOH . Q 3 HOH E 2 302 57 HOH HOH . Q 3 HOH E 3 303 22 HOH HOH . Q 3 HOH E 4 304 118 HOH HOH . Q 3 HOH E 5 305 120 HOH HOH . Q 3 HOH E 6 306 66 HOH HOH . Q 3 HOH E 7 307 126 HOH HOH . Q 3 HOH E 8 308 11 HOH HOH . Q 3 HOH E 9 309 119 HOH HOH . Q 3 HOH E 10 310 48 HOH HOH . Q 3 HOH E 11 311 103 HOH HOH . Q 3 HOH E 12 312 25 HOH HOH . Q 3 HOH E 13 313 5 HOH HOH . Q 3 HOH E 14 314 23 HOH HOH . Q 3 HOH E 15 315 122 HOH HOH . Q 3 HOH E 16 316 110 HOH HOH . R 3 HOH F 1 301 63 HOH HOH . R 3 HOH F 2 302 80 HOH HOH . R 3 HOH F 3 303 73 HOH HOH . R 3 HOH F 4 304 85 HOH HOH . R 3 HOH F 5 305 61 HOH HOH . R 3 HOH F 6 306 78 HOH HOH . R 3 HOH F 7 307 70 HOH HOH . R 3 HOH F 8 308 42 HOH HOH . R 3 HOH F 9 309 113 HOH HOH . R 3 HOH F 10 310 60 HOH HOH . R 3 HOH F 11 311 98 HOH HOH . R 3 HOH F 12 312 123 HOH HOH . R 3 HOH F 13 313 39 HOH HOH . R 3 HOH F 14 314 3 HOH HOH . R 3 HOH F 15 315 15 HOH HOH . R 3 HOH F 16 316 33 HOH HOH . R 3 HOH F 17 317 74 HOH HOH . R 3 HOH F 18 318 16 HOH HOH . R 3 HOH F 19 319 46 HOH HOH . R 3 HOH F 20 320 17 HOH HOH . R 3 HOH F 21 321 10 HOH HOH . R 3 HOH F 22 322 127 HOH HOH . R 3 HOH F 23 323 64 HOH HOH . R 3 HOH F 24 324 31 HOH HOH . R 3 HOH F 25 325 72 HOH HOH . R 3 HOH F 26 326 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . J 2 -0.967 17.39 -69.437 1 56.63 ? C1 CIT 201 D 1 HETATM 2 O O1 CIT . . . J 2 -1.031 17.975 -70.556 1 52.78 ? O1 CIT 201 D 1 HETATM 3 O O2 CIT . . . J 2 -1.446 17.811 -68.35 1 57.64 ? O2 CIT 201 D 1 HETATM 4 C C2 CIT . . . J 2 -0.265 16.065 -69.365 1 53.54 ? C2 CIT 201 D 1 HETATM 5 C C3 CIT . . . J 2 1.239 16.169 -69.707 1 51.63 ? C3 CIT 201 D 1 HETATM 6 O O7 CIT . . . J 2 1.453 17.176 -70.733 1 51.15 ? O7 CIT 201 D 1 HETATM 7 C C4 CIT . . . J 2 2.172 16.453 -68.508 1 52.13 ? C4 CIT 201 D 1 HETATM 8 C C5 CIT . . . J 2 3.592 15.956 -68.764 1 52.41 ? C5 CIT 201 D 1 HETATM 9 O O3 CIT . . . J 2 4.193 16.137 -69.822 1 56.93 ? O3 CIT 201 D 1 HETATM 10 O O4 CIT . . . J 2 4.199 15.31 -67.922 1 59.11 ? O4 CIT 201 D 1 HETATM 11 C C6 CIT . . . J 2 1.583 14.829 -70.275 1 47.86 ? C6 CIT 201 D 1 HETATM 12 O O5 CIT . . . J 2 2.088 14.838 -71.402 1 39.75 ? O5 CIT 201 D 1 HETATM 13 O O6 CIT . . . J 2 1.338 13.782 -69.619 1 52.08 ? O6 CIT 201 D 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #