data_5H1B # _model_server_result.job_id iOHtoQ7ohm0DvDsg9u_d9A _model_server_result.datetime_utc '2025-08-03 17:43:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":600}' # _entry.id 5H1B # _exptl.entry_id 5H1B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH1 ARG 170 A ARG 170 1_555 E C5 ANP . A ANP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? covale ? covale2 A CB ALA 271 A ALA 271 1_555 D OP2 DT 4 D DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale3 B NH1 ARG 170 B ARG 170 1_555 G C5 ANP . B ANP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? covale ? covale4 C NH1 ARG 170 C ARG 170 1_555 I C5 ANP . C ANP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? metalc ? metalc1 A OG1 THR 134 A THR 134 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 E O1B ANP . A ANP 600 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc3 E O2B ANP . A ANP 600 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc4 E O3A ANP . A ANP 600 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc5 B OG1 THR 134 B THR 134 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc6 G O1B ANP . B ANP 600 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 G O2B ANP . B ANP 600 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc8 G O3A ANP . B ANP 600 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc9 C OG1 THR 134 C THR 134 1_555 J MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc10 I O1B ANP . C ANP 600 1_555 J MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc11 I O2B ANP . C ANP 600 1_555 J MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc12 I O3A ANP . C ANP 600 1_555 J MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5H1B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 600 600 ANP ANP . F 4 MG A 1 601 601 MG MG . G 3 ANP B 1 600 600 ANP ANP . H 4 MG B 1 601 601 MG MG . I 3 ANP C 1 600 600 ANP ANP . J 4 MG C 1 601 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 3 146.408 162.011 159.082 1 20 ? PG ANP 600 C 1 HETATM 2 O O1G ANP . . . I 3 147.238 163.233 158.528 1 20 ? O1G ANP 600 C 1 HETATM 3 O O2G ANP . . . I 3 146.634 161.89 160.637 1 20 ? O2G ANP 600 C 1 HETATM 4 O O3G ANP . . . I 3 144.958 162.229 158.791 1 20 ? O3G ANP 600 C 1 HETATM 5 P PB ANP . . . I 3 145.781 159.411 158.59 1 20 ? PB ANP 600 C 1 HETATM 6 O O1B ANP . . . I 3 146.447 158.02 158.5 1 20 ? O1B ANP 600 C 1 HETATM 7 O O2B ANP . . . I 3 145.176 159.598 159.937 1 20 ? O2B ANP 600 C 1 HETATM 8 N N3B ANP . . . I 3 146.915 160.601 158.303 1 20 ? N3B ANP 600 C 1 HETATM 9 P PA ANP . . . I 3 144.557 158.292 156.479 1 20 ? PA ANP 600 C 1 HETATM 10 O O1A ANP . . . I 3 145.986 157.797 156.252 1 20 ? O1A ANP 600 C 1 HETATM 11 O O2A ANP . . . I 3 143.582 157.29 156.945 1 20 ? O2A ANP 600 C 1 HETATM 12 O O3A ANP . . . I 3 144.674 159.483 157.507 1 20 ? O3A ANP 600 C 1 HETATM 13 O O5' ANP . . . I 3 143.955 158.911 155.162 1 20 ? O5' ANP 600 C 1 HETATM 14 C C5' ANP . . . I 3 142.837 158.299 154.489 1 20 ? C5' ANP 600 C 1 HETATM 15 C C4' ANP . . . I 3 143.345 157.266 153.515 1 20 ? C4' ANP 600 C 1 HETATM 16 O O4' ANP . . . I 3 142.303 156.3 153.254 1 20 ? O4' ANP 600 C 1 HETATM 17 C C3' ANP . . . I 3 143.742 157.808 152.147 1 20 ? C3' ANP 600 C 1 HETATM 18 O O3' ANP . . . I 3 144.737 156.982 151.554 1 20 ? O3' ANP 600 C 1 HETATM 19 C C2' ANP . . . I 3 142.434 157.709 151.376 1 20 ? C2' ANP 600 C 1 HETATM 20 O O2' ANP . . . I 3 142.623 157.654 149.969 1 20 ? O2' ANP 600 C 1 HETATM 21 C C1' ANP . . . I 3 141.904 156.379 151.9 1 20 ? C1' ANP 600 C 1 HETATM 22 N N9 ANP . . . I 3 140.458 156.278 151.836 1 20 ? N9 ANP 600 C 1 HETATM 23 C C8 ANP . . . I 3 139.548 156.911 152.638 1 20 ? C8 ANP 600 C 1 HETATM 24 N N7 ANP . . . I 3 138.301 156.65 152.34 1 20 ? N7 ANP 600 C 1 HETATM 25 C C5 ANP . . . I 3 138.396 155.781 151.264 1 20 ? C5 ANP 600 C 1 HETATM 26 C C6 ANP . . . I 3 137.423 155.133 150.481 1 20 ? C6 ANP 600 C 1 HETATM 27 N N6 ANP . . . I 3 136.108 155.265 150.672 1 20 ? N6 ANP 600 C 1 HETATM 28 N N1 ANP . . . I 3 137.854 154.338 149.479 1 20 ? N1 ANP 600 C 1 HETATM 29 C C2 ANP . . . I 3 139.168 154.209 149.281 1 20 ? C2 ANP 600 C 1 HETATM 30 N N3 ANP . . . I 3 140.177 154.77 149.952 1 20 ? N3 ANP 600 C 1 HETATM 31 C C4 ANP . . . I 3 139.719 155.55 150.937 1 20 ? C4 ANP 600 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #