data_5H2P # _model_server_result.job_id y1iJG_0WO8CRNSZtpw_aVw _model_server_result.datetime_utc '2024-11-23 01:40:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":316}' # _entry.id 5H2P # _exptl.entry_id 5H2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.308 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H2P _cell.length_a 62.5 _cell.length_b 62.5 _cell.length_c 112 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.5 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.25 -54.126588 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 J N N ? 9 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.311 ? covale ? covale2 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.31 ? # _chem_comp.formula 'C11 H24' _chem_comp.formula_weight 156.308 _chem_comp.id UND _chem_comp.mon_nstd_flag . _chem_comp.name UNDECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 UND sing 741 n n C1 H11 UND sing 742 n n C1 H12 UND sing 743 n n C1 H13 UND sing 744 n n C2 C3 UND sing 745 n n C2 H21 UND sing 746 n n C2 H22 UND sing 747 n n C3 C4 UND sing 748 n n C3 H31 UND sing 749 n n C3 H32 UND sing 750 n n C4 C5 UND sing 751 n n C4 H41 UND sing 752 n n C4 H42 UND sing 753 n n C5 C6 UND sing 754 n n C5 H51 UND sing 755 n n C5 H52 UND sing 756 n n C6 C7 UND sing 757 n n C6 H61 UND sing 758 n n C6 H62 UND sing 759 n n C7 C8 UND sing 760 n n C7 H71 UND sing 761 n n C7 H72 UND sing 762 n n C8 C9 UND sing 763 n n C8 H81 UND sing 764 n n C8 H82 UND sing 765 n n C9 C10 UND sing 766 n n C9 H91 UND sing 767 n n C9 H92 UND sing 768 n n C10 C11 UND sing 769 n n C10 H101 UND sing 770 n n C10 H102 UND sing 771 n n C11 H111 UND sing 772 n n C11 H112 UND sing 773 n n C11 H113 UND sing 774 n n # _atom_sites.entry_id 5H2P _atom_sites.fract_transf_matrix[1][1] 0.016 _atom_sites.fract_transf_matrix[1][2] 0.009238 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 L2P A 1 302 600 L2P L2P . D 4 TRD A 1 303 601 TRD TRD . E 5 D10 A 1 304 602 D10 D10 . F 6 HP6 A 1 305 603 HP6 HP6 . G 7 OCT A 1 306 604 OCT OCT . H 7 OCT A 1 307 605 OCT OCT . I 8 MYS A 1 308 606 MYS MYS . J 9 UND A 1 309 607 UND UND . K 3 L2P A 1 310 608 L2P L2P . L 3 L2P A 1 311 609 L2P L2P . M 8 MYS A 1 312 610 MYS MYS . N 10 DD9 A 1 313 611 DD9 DD9 . O 11 C14 A 1 314 612 C14 C14 . P 7 OCT A 1 315 613 OCT OCT . Q 9 UND A 1 316 614 UND UND . R 12 HOH A 1 401 456 HOH HOH . R 12 HOH A 2 402 441 HOH HOH . R 12 HOH A 3 403 425 HOH HOH . R 12 HOH A 4 404 455 HOH HOH . R 12 HOH A 5 405 402 HOH HOH . R 12 HOH A 6 406 406 HOH HOH . R 12 HOH A 7 407 443 HOH HOH . R 12 HOH A 8 408 400 HOH HOH . R 12 HOH A 9 409 408 HOH HOH . R 12 HOH A 10 410 424 HOH HOH . R 12 HOH A 11 411 438 HOH HOH . R 12 HOH A 12 412 451 HOH HOH . R 12 HOH A 13 413 407 HOH HOH . R 12 HOH A 14 414 405 HOH HOH . R 12 HOH A 15 415 401 HOH HOH . R 12 HOH A 16 416 454 HOH HOH . R 12 HOH A 17 417 403 HOH HOH . R 12 HOH A 18 418 442 HOH HOH . R 12 HOH A 19 419 414 HOH HOH . R 12 HOH A 20 420 433 HOH HOH . R 12 HOH A 21 421 404 HOH HOH . R 12 HOH A 22 422 453 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UND . . . Q 9 -22.847 2.717 12.182 1 82.02 ? C1 UND 316 A 1 HETATM 2 C C2 UND . . . Q 9 -21.994 3.951 11.895 1 83.79 ? C2 UND 316 A 1 HETATM 3 C C3 UND . . . Q 9 -21.589 3.973 10.424 1 87.25 ? C3 UND 316 A 1 HETATM 4 C C4 UND . . . Q 9 -21.125 5.381 10.056 1 86.11 ? C4 UND 316 A 1 HETATM 5 C C5 UND . . . Q 9 -20.697 5.434 8.59 1 96.49 ? C5 UND 316 A 1 HETATM 6 C C6 UND . . . Q 9 -19.467 4.55 8.382 1 85.66 ? C6 UND 316 A 1 HETATM 7 C C7 UND . . . Q 9 -18.729 4.948 7.103 1 87.76 ? C7 UND 316 A 1 HETATM 8 C C8 UND . . . Q 9 -18.898 3.86 6.044 1 82.2 ? C8 UND 316 A 1 HETATM 9 C C9 UND . . . Q 9 -20.332 3.861 5.516 1 77.43 ? C9 UND 316 A 1 HETATM 10 C C10 UND . . . Q 9 -20.312 3.846 3.989 1 74.3 ? C10 UND 316 A 1 HETATM 11 C C11 UND . . . Q 9 -21.727 4.069 3.456 1 70.7 ? C11 UND 316 A 1 HETATM 12 H H11 UND . . . Q 9 -23.646 2.741 11.632 1 98.42 ? H11 UND 316 A 1 HETATM 13 H H12 UND . . . Q 9 -22.338 1.917 11.978 1 98.42 ? H12 UND 316 A 1 HETATM 14 H H13 UND . . . Q 9 -23.099 2.709 13.119 1 98.42 ? H13 UND 316 A 1 HETATM 15 H H21 UND . . . Q 9 -22.504 4.75 12.1 1 100.54 ? H21 UND 316 A 1 HETATM 16 H H22 UND . . . Q 9 -21.197 3.927 12.448 1 100.54 ? H22 UND 316 A 1 HETATM 17 H H31 UND . . . Q 9 -22.349 3.728 9.874 1 104.71 ? H31 UND 316 A 1 HETATM 18 H H32 UND . . . Q 9 -20.865 3.344 10.277 1 104.71 ? H32 UND 316 A 1 HETATM 19 H H41 UND . . . Q 9 -20.374 5.628 10.618 1 103.33 ? H41 UND 316 A 1 HETATM 20 H H42 UND . . . Q 9 -21.853 6.006 10.2 1 103.33 ? H42 UND 316 A 1 HETATM 21 H H51 UND . . . Q 9 -20.482 6.349 8.349 1 115.79 ? H51 UND 316 A 1 HETATM 22 H H52 UND . . . Q 9 -21.422 5.115 8.03 1 115.79 ? H52 UND 316 A 1 HETATM 23 H H61 UND . . . Q 9 -18.87 4.65 9.14 1 102.79 ? H61 UND 316 A 1 HETATM 24 H H62 UND . . . Q 9 -19.747 3.624 8.315 1 102.79 ? H62 UND 316 A 1 HETATM 25 H H71 UND . . . Q 9 -19.093 5.782 6.768 1 105.31 ? H71 UND 316 A 1 HETATM 26 H H72 UND . . . Q 9 -17.786 5.063 7.298 1 105.31 ? H72 UND 316 A 1 HETATM 27 H H81 UND . . . Q 9 -18.285 4.027 5.311 1 98.63 ? H81 UND 316 A 1 HETATM 28 H H82 UND . . . Q 9 -18.701 2.995 6.437 1 98.63 ? H82 UND 316 A 1 HETATM 29 H H91 UND . . . Q 9 -20.79 4.658 5.826 1 92.91 ? H91 UND 316 A 1 HETATM 30 H H92 UND . . . Q 9 -20.797 3.074 5.841 1 92.91 ? H92 UND 316 A 1 HETATM 31 H H101 UND . . . Q 9 -19.73 4.552 3.667 1 89.16 ? H101 UND 316 A 1 HETATM 32 H H102 UND . . . Q 9 -19.981 2.988 3.679 1 89.16 ? H102 UND 316 A 1 HETATM 33 H H111 UND . . . Q 9 -22.058 4.926 3.766 1 84.84 ? H111 UND 316 A 1 HETATM 34 H H112 UND . . . Q 9 -22.309 3.362 3.777 1 84.84 ? H112 UND 316 A 1 HETATM 35 H H113 UND . . . Q 9 -21.712 4.06 2.486 1 84.84 ? H113 UND 316 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #