data_5H2Z # _model_server_result.job_id DFqdhRxgnv5VtN0ioD2DMw _model_server_result.datetime_utc '2024-11-08 18:47:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5H2Z # _exptl.entry_id 5H2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H2Z _cell.length_a 90.875 _cell.length_b 90.875 _cell.length_c 123.17 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 110 n n N1 C10 FMN doub 111 n n C2 O2 FMN doub 112 n n C2 N3 FMN sing 113 n n N3 C4 FMN sing 114 n n N3 HN3 FMN sing 115 n n C4 O4 FMN doub 116 n n C4 C4A FMN sing 117 n n C4A N5 FMN doub 118 n n C4A C10 FMN sing 119 n n N5 C5A FMN sing 120 n n C5A C6 FMN doub 121 n y C5A C9A FMN sing 122 n y C6 C7 FMN sing 123 n y C6 H6 FMN sing 124 n n C7 C7M FMN sing 125 n n C7 C8 FMN doub 126 n y C7M HM71 FMN sing 127 n n C7M HM72 FMN sing 128 n n C7M HM73 FMN sing 129 n n C8 C8M FMN sing 130 n n C8 C9 FMN sing 131 n y C8M HM81 FMN sing 132 n n C8M HM82 FMN sing 133 n n C8M HM83 FMN sing 134 n n C9 C9A FMN doub 135 n y C9 H9 FMN sing 136 n n C9A N10 FMN sing 137 n n N10 C10 FMN sing 138 n n N10 C1' FMN sing 139 n n C1' C2' FMN sing 140 n n C1' "H1'1" FMN sing 141 n n C1' "H1'2" FMN sing 142 n n C2' O2' FMN sing 143 n n C2' C3' FMN sing 144 n n C2' H2' FMN sing 145 n n O2' HO2' FMN sing 146 n n C3' O3' FMN sing 147 n n C3' C4' FMN sing 148 n n C3' H3' FMN sing 149 n n O3' HO3' FMN sing 150 n n C4' O4' FMN sing 151 n n C4' C5' FMN sing 152 n n C4' H4' FMN sing 153 n n O4' HO4' FMN sing 154 n n C5' O5' FMN sing 155 n n C5' "H5'1" FMN sing 156 n n C5' "H5'2" FMN sing 157 n n O5' P FMN sing 158 n n P O1P FMN doub 159 n n P O2P FMN sing 160 n n P O3P FMN sing 161 n n O2P HOP2 FMN sing 162 n n O3P HOP3 FMN sing 163 n n # _atom_sites.entry_id 5H2Z _atom_sites.fract_transf_matrix[1][1] 0.011004 _atom_sites.fract_transf_matrix[1][2] 0.006353 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 ORO A 1 402 1 ORO ORO . D 4 SO4 A 1 403 1 SO4 SO4 . E 4 SO4 A 1 404 2 SO4 SO4 . F 5 ACT A 1 405 3 ACT ACT . G 5 ACT A 1 406 4 ACT ACT . H 6 7GF A 1 407 1 7GF 7GF . I 7 HOH A 1 501 89 HOH HOH . I 7 HOH A 2 502 110 HOH HOH . I 7 HOH A 3 503 120 HOH HOH . I 7 HOH A 4 504 132 HOH HOH . I 7 HOH A 5 505 2 HOH HOH . I 7 HOH A 6 506 85 HOH HOH . I 7 HOH A 7 507 140 HOH HOH . I 7 HOH A 8 508 97 HOH HOH . I 7 HOH A 9 509 126 HOH HOH . I 7 HOH A 10 510 287 HOH HOH . I 7 HOH A 11 511 43 HOH HOH . I 7 HOH A 12 512 269 HOH HOH . I 7 HOH A 13 513 48 HOH HOH . I 7 HOH A 14 514 38 HOH HOH . I 7 HOH A 15 515 60 HOH HOH . I 7 HOH A 16 516 37 HOH HOH . I 7 HOH A 17 517 102 HOH HOH . I 7 HOH A 18 518 103 HOH HOH . I 7 HOH A 19 519 42 HOH HOH . I 7 HOH A 20 520 311 HOH HOH . I 7 HOH A 21 521 63 HOH HOH . I 7 HOH A 22 522 55 HOH HOH . I 7 HOH A 23 523 27 HOH HOH . I 7 HOH A 24 524 8 HOH HOH . I 7 HOH A 25 525 49 HOH HOH . I 7 HOH A 26 526 312 HOH HOH . I 7 HOH A 27 527 72 HOH HOH . I 7 HOH A 28 528 68 HOH HOH . I 7 HOH A 29 529 111 HOH HOH . I 7 HOH A 30 530 285 HOH HOH . I 7 HOH A 31 531 113 HOH HOH . I 7 HOH A 32 532 28 HOH HOH . I 7 HOH A 33 533 91 HOH HOH . I 7 HOH A 34 534 10 HOH HOH . I 7 HOH A 35 535 33 HOH HOH . I 7 HOH A 36 536 129 HOH HOH . I 7 HOH A 37 537 22 HOH HOH . I 7 HOH A 38 538 21 HOH HOH . I 7 HOH A 39 539 77 HOH HOH . I 7 HOH A 40 540 82 HOH HOH . I 7 HOH A 41 541 46 HOH HOH . I 7 HOH A 42 542 35 HOH HOH . I 7 HOH A 43 543 134 HOH HOH . I 7 HOH A 44 544 19 HOH HOH . I 7 HOH A 45 545 31 HOH HOH . I 7 HOH A 46 546 128 HOH HOH . I 7 HOH A 47 547 67 HOH HOH . I 7 HOH A 48 548 99 HOH HOH . I 7 HOH A 49 549 5 HOH HOH . I 7 HOH A 50 550 15 HOH HOH . I 7 HOH A 51 551 96 HOH HOH . I 7 HOH A 52 552 106 HOH HOH . I 7 HOH A 53 553 58 HOH HOH . I 7 HOH A 54 554 6 HOH HOH . I 7 HOH A 55 555 79 HOH HOH . I 7 HOH A 56 556 52 HOH HOH . I 7 HOH A 57 557 76 HOH HOH . I 7 HOH A 58 558 20 HOH HOH . I 7 HOH A 59 559 86 HOH HOH . I 7 HOH A 60 560 277 HOH HOH . I 7 HOH A 61 561 45 HOH HOH . I 7 HOH A 62 562 137 HOH HOH . I 7 HOH A 63 563 4 HOH HOH . I 7 HOH A 64 564 17 HOH HOH . I 7 HOH A 65 565 275 HOH HOH . I 7 HOH A 66 566 267 HOH HOH . I 7 HOH A 67 567 104 HOH HOH . I 7 HOH A 68 568 26 HOH HOH . I 7 HOH A 69 569 59 HOH HOH . I 7 HOH A 70 570 274 HOH HOH . I 7 HOH A 71 571 81 HOH HOH . I 7 HOH A 72 572 278 HOH HOH . I 7 HOH A 73 573 100 HOH HOH . I 7 HOH A 74 574 14 HOH HOH . I 7 HOH A 75 575 73 HOH HOH . I 7 HOH A 76 576 39 HOH HOH . I 7 HOH A 77 577 41 HOH HOH . I 7 HOH A 78 578 9 HOH HOH . I 7 HOH A 79 579 116 HOH HOH . I 7 HOH A 80 580 246 HOH HOH . I 7 HOH A 81 581 18 HOH HOH . I 7 HOH A 82 582 273 HOH HOH . I 7 HOH A 83 583 25 HOH HOH . I 7 HOH A 84 584 44 HOH HOH . I 7 HOH A 85 585 40 HOH HOH . I 7 HOH A 86 586 145 HOH HOH . I 7 HOH A 87 587 270 HOH HOH . I 7 HOH A 88 588 94 HOH HOH . I 7 HOH A 89 589 11 HOH HOH . I 7 HOH A 90 590 313 HOH HOH . I 7 HOH A 91 591 13 HOH HOH . I 7 HOH A 92 592 158 HOH HOH . I 7 HOH A 93 593 84 HOH HOH . I 7 HOH A 94 594 64 HOH HOH . I 7 HOH A 95 595 57 HOH HOH . I 7 HOH A 96 596 266 HOH HOH . I 7 HOH A 97 597 69 HOH HOH . I 7 HOH A 98 598 16 HOH HOH . I 7 HOH A 99 599 272 HOH HOH . I 7 HOH A 100 600 32 HOH HOH . I 7 HOH A 101 601 90 HOH HOH . I 7 HOH A 102 602 36 HOH HOH . I 7 HOH A 103 603 93 HOH HOH . I 7 HOH A 104 604 127 HOH HOH . I 7 HOH A 105 605 29 HOH HOH . I 7 HOH A 106 606 7 HOH HOH . I 7 HOH A 107 607 54 HOH HOH . I 7 HOH A 108 608 30 HOH HOH . I 7 HOH A 109 609 56 HOH HOH . I 7 HOH A 110 610 34 HOH HOH . I 7 HOH A 111 611 271 HOH HOH . I 7 HOH A 112 612 47 HOH HOH . I 7 HOH A 113 613 118 HOH HOH . I 7 HOH A 114 614 70 HOH HOH . I 7 HOH A 115 615 121 HOH HOH . I 7 HOH A 116 616 62 HOH HOH . I 7 HOH A 117 617 66 HOH HOH . I 7 HOH A 118 618 135 HOH HOH . I 7 HOH A 119 619 112 HOH HOH . I 7 HOH A 120 620 71 HOH HOH . I 7 HOH A 121 621 314 HOH HOH . I 7 HOH A 122 622 301 HOH HOH . I 7 HOH A 123 623 248 HOH HOH . I 7 HOH A 124 624 12 HOH HOH . I 7 HOH A 125 625 300 HOH HOH . I 7 HOH A 126 626 95 HOH HOH . I 7 HOH A 127 627 306 HOH HOH . I 7 HOH A 128 628 65 HOH HOH . I 7 HOH A 129 629 105 HOH HOH . I 7 HOH A 130 630 252 HOH HOH . I 7 HOH A 131 631 88 HOH HOH . I 7 HOH A 132 632 247 HOH HOH . I 7 HOH A 133 633 282 HOH HOH . I 7 HOH A 134 634 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 3.509 42.397 8.784 1 15.14 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 3.163 43.017 9.893 1 15.32 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 3.753 42.94 10.956 1 15.54 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 2.024 43.87 9.804 1 15.24 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 1.346 44.083 8.714 1 16.4 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 0.27 44.853 8.706 1 16.34 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 1.695 43.465 7.475 1 15.07 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 1.071 43.666 6.284 1 15.61 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 1.464 42.924 5.186 1 14.73 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 0.811 43.015 3.975 1 14.85 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 1.116 42.333 2.87 1 15.94 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 0.359 42.427 1.584 1 17.19 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 2.192 41.412 2.96 1 15.45 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 2.634 40.543 1.798 1 17.6 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 2.917 41.279 4.157 1 15.2 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 2.581 41.988 5.309 1 14.97 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 3.245 41.954 6.526 1 14.1 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 2.879 42.594 7.659 1 15.17 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 4.449 41.03 6.561 1 14.77 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 4.147 39.565 6.789 1 14.14 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 3.548 39.358 8.056 1 14.48 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 5.4 38.658 6.724 1 13.28 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 6.288 39.132 7.763 1 14.09 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 6.105 38.791 5.357 1 14.15 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 5.232 38.982 4.254 1 13.63 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 7.029 37.565 5.096 1 13.36 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 6.26 36.355 4.987 1 13.62 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 5.793 35.751 3.577 1 14.71 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 7.025 35.71 2.673 1 14.69 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 5.31 34.39 3.942 1 13.54 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 4.73 36.664 3.015 1 15.15 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #