data_5H2Z # _model_server_result.job_id jNFTfCM5qspFZlfVdhvegQ _model_server_result.datetime_utc '2024-11-22 21:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5H2Z # _exptl.entry_id 5H2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H2Z _cell.length_a 90.875 _cell.length_b 90.875 _cell.length_c 123.17 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 318 n y N1 C6 ORO sing 319 n y N1 HN1 ORO sing 320 n n C2 O2 ORO doub 321 n n C2 N3 ORO sing 322 n y N3 C4 ORO sing 323 n y N3 HN3 ORO sing 324 n n C4 O4 ORO doub 325 n n C4 C5 ORO sing 326 n y C5 C6 ORO doub 327 n y C5 H5 ORO sing 328 n n C6 C7 ORO sing 329 n n C7 O71 ORO doub 330 n n C7 O72 ORO sing 331 n n O72 HO7 ORO sing 332 n n # _atom_sites.entry_id 5H2Z _atom_sites.fract_transf_matrix[1][1] 0.011004 _atom_sites.fract_transf_matrix[1][2] 0.006353 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 ORO A 1 402 1 ORO ORO . D 4 SO4 A 1 403 1 SO4 SO4 . E 4 SO4 A 1 404 2 SO4 SO4 . F 5 ACT A 1 405 3 ACT ACT . G 5 ACT A 1 406 4 ACT ACT . H 6 7GF A 1 407 1 7GF 7GF . I 7 HOH A 1 501 89 HOH HOH . I 7 HOH A 2 502 110 HOH HOH . I 7 HOH A 3 503 120 HOH HOH . I 7 HOH A 4 504 132 HOH HOH . I 7 HOH A 5 505 2 HOH HOH . I 7 HOH A 6 506 85 HOH HOH . I 7 HOH A 7 507 140 HOH HOH . I 7 HOH A 8 508 97 HOH HOH . I 7 HOH A 9 509 126 HOH HOH . I 7 HOH A 10 510 287 HOH HOH . I 7 HOH A 11 511 43 HOH HOH . I 7 HOH A 12 512 269 HOH HOH . I 7 HOH A 13 513 48 HOH HOH . I 7 HOH A 14 514 38 HOH HOH . I 7 HOH A 15 515 60 HOH HOH . I 7 HOH A 16 516 37 HOH HOH . I 7 HOH A 17 517 102 HOH HOH . I 7 HOH A 18 518 103 HOH HOH . I 7 HOH A 19 519 42 HOH HOH . I 7 HOH A 20 520 311 HOH HOH . I 7 HOH A 21 521 63 HOH HOH . I 7 HOH A 22 522 55 HOH HOH . I 7 HOH A 23 523 27 HOH HOH . I 7 HOH A 24 524 8 HOH HOH . I 7 HOH A 25 525 49 HOH HOH . I 7 HOH A 26 526 312 HOH HOH . I 7 HOH A 27 527 72 HOH HOH . I 7 HOH A 28 528 68 HOH HOH . I 7 HOH A 29 529 111 HOH HOH . I 7 HOH A 30 530 285 HOH HOH . I 7 HOH A 31 531 113 HOH HOH . I 7 HOH A 32 532 28 HOH HOH . I 7 HOH A 33 533 91 HOH HOH . I 7 HOH A 34 534 10 HOH HOH . I 7 HOH A 35 535 33 HOH HOH . I 7 HOH A 36 536 129 HOH HOH . I 7 HOH A 37 537 22 HOH HOH . I 7 HOH A 38 538 21 HOH HOH . I 7 HOH A 39 539 77 HOH HOH . I 7 HOH A 40 540 82 HOH HOH . I 7 HOH A 41 541 46 HOH HOH . I 7 HOH A 42 542 35 HOH HOH . I 7 HOH A 43 543 134 HOH HOH . I 7 HOH A 44 544 19 HOH HOH . I 7 HOH A 45 545 31 HOH HOH . I 7 HOH A 46 546 128 HOH HOH . I 7 HOH A 47 547 67 HOH HOH . I 7 HOH A 48 548 99 HOH HOH . I 7 HOH A 49 549 5 HOH HOH . I 7 HOH A 50 550 15 HOH HOH . I 7 HOH A 51 551 96 HOH HOH . I 7 HOH A 52 552 106 HOH HOH . I 7 HOH A 53 553 58 HOH HOH . I 7 HOH A 54 554 6 HOH HOH . I 7 HOH A 55 555 79 HOH HOH . I 7 HOH A 56 556 52 HOH HOH . I 7 HOH A 57 557 76 HOH HOH . I 7 HOH A 58 558 20 HOH HOH . I 7 HOH A 59 559 86 HOH HOH . I 7 HOH A 60 560 277 HOH HOH . I 7 HOH A 61 561 45 HOH HOH . I 7 HOH A 62 562 137 HOH HOH . I 7 HOH A 63 563 4 HOH HOH . I 7 HOH A 64 564 17 HOH HOH . I 7 HOH A 65 565 275 HOH HOH . I 7 HOH A 66 566 267 HOH HOH . I 7 HOH A 67 567 104 HOH HOH . I 7 HOH A 68 568 26 HOH HOH . I 7 HOH A 69 569 59 HOH HOH . I 7 HOH A 70 570 274 HOH HOH . I 7 HOH A 71 571 81 HOH HOH . I 7 HOH A 72 572 278 HOH HOH . I 7 HOH A 73 573 100 HOH HOH . I 7 HOH A 74 574 14 HOH HOH . I 7 HOH A 75 575 73 HOH HOH . I 7 HOH A 76 576 39 HOH HOH . I 7 HOH A 77 577 41 HOH HOH . I 7 HOH A 78 578 9 HOH HOH . I 7 HOH A 79 579 116 HOH HOH . I 7 HOH A 80 580 246 HOH HOH . I 7 HOH A 81 581 18 HOH HOH . I 7 HOH A 82 582 273 HOH HOH . I 7 HOH A 83 583 25 HOH HOH . I 7 HOH A 84 584 44 HOH HOH . I 7 HOH A 85 585 40 HOH HOH . I 7 HOH A 86 586 145 HOH HOH . I 7 HOH A 87 587 270 HOH HOH . I 7 HOH A 88 588 94 HOH HOH . I 7 HOH A 89 589 11 HOH HOH . I 7 HOH A 90 590 313 HOH HOH . I 7 HOH A 91 591 13 HOH HOH . I 7 HOH A 92 592 158 HOH HOH . I 7 HOH A 93 593 84 HOH HOH . I 7 HOH A 94 594 64 HOH HOH . I 7 HOH A 95 595 57 HOH HOH . I 7 HOH A 96 596 266 HOH HOH . I 7 HOH A 97 597 69 HOH HOH . I 7 HOH A 98 598 16 HOH HOH . I 7 HOH A 99 599 272 HOH HOH . I 7 HOH A 100 600 32 HOH HOH . I 7 HOH A 101 601 90 HOH HOH . I 7 HOH A 102 602 36 HOH HOH . I 7 HOH A 103 603 93 HOH HOH . I 7 HOH A 104 604 127 HOH HOH . I 7 HOH A 105 605 29 HOH HOH . I 7 HOH A 106 606 7 HOH HOH . I 7 HOH A 107 607 54 HOH HOH . I 7 HOH A 108 608 30 HOH HOH . I 7 HOH A 109 609 56 HOH HOH . I 7 HOH A 110 610 34 HOH HOH . I 7 HOH A 111 611 271 HOH HOH . I 7 HOH A 112 612 47 HOH HOH . I 7 HOH A 113 613 118 HOH HOH . I 7 HOH A 114 614 70 HOH HOH . I 7 HOH A 115 615 121 HOH HOH . I 7 HOH A 116 616 62 HOH HOH . I 7 HOH A 117 617 66 HOH HOH . I 7 HOH A 118 618 135 HOH HOH . I 7 HOH A 119 619 112 HOH HOH . I 7 HOH A 120 620 71 HOH HOH . I 7 HOH A 121 621 314 HOH HOH . I 7 HOH A 122 622 301 HOH HOH . I 7 HOH A 123 623 248 HOH HOH . I 7 HOH A 124 624 12 HOH HOH . I 7 HOH A 125 625 300 HOH HOH . I 7 HOH A 126 626 95 HOH HOH . I 7 HOH A 127 627 306 HOH HOH . I 7 HOH A 128 628 65 HOH HOH . I 7 HOH A 129 629 105 HOH HOH . I 7 HOH A 130 630 252 HOH HOH . I 7 HOH A 131 631 88 HOH HOH . I 7 HOH A 132 632 247 HOH HOH . I 7 HOH A 133 633 282 HOH HOH . I 7 HOH A 134 634 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 3.123 46.62 7.14 1 18.8 ? N1 ORO 402 A 1 HETATM 2 C C2 ORO . . . C 3 4.129 45.683 7.606 1 15.59 ? C2 ORO 402 A 1 HETATM 3 O O2 ORO . . . C 3 4.544 45.553 8.799 1 15.64 ? O2 ORO 402 A 1 HETATM 4 N N3 ORO . . . C 3 4.862 45.055 6.616 1 15.3 ? N3 ORO 402 A 1 HETATM 5 C C4 ORO . . . C 3 4.564 45.172 5.322 1 17.25 ? C4 ORO 402 A 1 HETATM 6 O O4 ORO . . . C 3 5.213 44.615 4.403 1 15.99 ? O4 ORO 402 A 1 HETATM 7 C C5 ORO . . . C 3 3.552 45.958 4.896 1 11.7 ? C5 ORO 402 A 1 HETATM 8 C C6 ORO . . . C 3 2.725 46.541 5.857 1 16.03 ? C6 ORO 402 A 1 HETATM 9 C C7 ORO . . . C 3 1.864 47.7 5.374 1 19.69 ? C7 ORO 402 A 1 HETATM 10 O O71 ORO . . . C 3 2.371 48.446 4.473 1 20.03 ? O71 ORO 402 A 1 HETATM 11 O O72 ORO . . . C 3 0.8 47.955 5.954 1 19.19 ? O72 ORO 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #