data_5H35
#
_model_server_result.job_id            0Z91ObwlqAW8HVE9rfsvzQ 
_model_server_result.datetime_utc      '2024-12-11 21:55:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":302}' 
#
_entry.id    5H35 
#
_exptl.entry_id    5H35 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.94 
_cell.angle_gamma         90 
_cell.entry_id            5H35 
_cell.length_a            102.734 
_cell.length_b            171.391 
_cell.length_c            103.265 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 147 A CYS 147 1_555 A SG CYS 202 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 B SG CYS 139 B CYS 139 1_555 B SG CYS 199 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf6 F SG CYS 147 F CYS 147 1_555 F SG CYS 202 F CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 G SG CYS 23 G CYS 23 1_555 G SG CYS 93 G CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 G SG CYS 139 G CYS 139 1_555 G SG CYS 199 G CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf9 H SG CYS 22 H CYS 22 1_555 H SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf10 H SG CYS 147 H CYS 147 1_555 H SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf11 I SG CYS 23 I CYS 23 1_555 I SG CYS 93 I CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 I SG CYS 139 I CYS 139 1_555 I SG CYS 199 I CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 C OD1 ASN 142 C ASN 142 1_555 K NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc2 K NA NA . C NA 301 1_555 R O HOH . C HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc3 K NA NA . C NA 301 1_555 D OD1 ASN 142 D ASN 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc4 K NA NA . C NA 301 1_555 S O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc5 K NA NA . C NA 301 1_555 E OD1 ASN 142 E ASN 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc6 K NA NA . C NA 301 1_555 T O HOH . E HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5H35 
_atom_sites.fract_transf_matrix[1][1]    0.009734 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005164 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010962 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 GOL A 1 301 1 GOL GOL . 
K 5 NA C 1 301 1 NA NA . 
L 4 GOL C 1 302 2 GOL GOL . 
M 6 PX4 C 1 303 1 PX4 PX4 . 
N 6 PX4 E 1 301 2 PX4 PX4 . 
O 6 PX4 E 1 302 3 PX4 PX4 . 
P 7 HOH A 1 401 108 HOH HOH . 
P 7 HOH A 2 402 107 HOH HOH . 
P 7 HOH A 3 403 50 HOH HOH . 
P 7 HOH A 4 404 24 HOH HOH . 
P 7 HOH A 5 405 97 HOH HOH . 
P 7 HOH A 6 406 109 HOH HOH . 
P 7 HOH A 7 407 84 HOH HOH . 
P 7 HOH A 8 408 100 HOH HOH . 
P 7 HOH A 9 409 96 HOH HOH . 
P 7 HOH A 10 410 95 HOH HOH . 
P 7 HOH A 11 411 94 HOH HOH . 
P 7 HOH A 12 412 103 HOH HOH . 
P 7 HOH A 13 413 43 HOH HOH . 
P 7 HOH A 14 414 41 HOH HOH . 
P 7 HOH A 15 415 92 HOH HOH . 
P 7 HOH A 16 416 91 HOH HOH . 
P 7 HOH A 17 417 104 HOH HOH . 
P 7 HOH A 18 418 3 HOH HOH . 
P 7 HOH A 19 419 105 HOH HOH . 
P 7 HOH A 20 420 32 HOH HOH . 
P 7 HOH A 21 421 2 HOH HOH . 
P 7 HOH A 22 422 22 HOH HOH . 
P 7 HOH A 23 423 106 HOH HOH . 
P 7 HOH A 24 424 21 HOH HOH . 
P 7 HOH A 25 425 102 HOH HOH . 
P 7 HOH A 26 426 5 HOH HOH . 
P 7 HOH A 27 427 4 HOH HOH . 
P 7 HOH A 28 428 1 HOH HOH . 
Q 7 HOH B 1 301 115 HOH HOH . 
Q 7 HOH B 2 302 116 HOH HOH . 
Q 7 HOH B 3 303 67 HOH HOH . 
Q 7 HOH B 4 304 46 HOH HOH . 
Q 7 HOH B 5 305 31 HOH HOH . 
Q 7 HOH B 6 306 101 HOH HOH . 
Q 7 HOH B 7 307 45 HOH HOH . 
Q 7 HOH B 8 308 69 HOH HOH . 
Q 7 HOH B 9 309 87 HOH HOH . 
Q 7 HOH B 10 310 114 HOH HOH . 
Q 7 HOH B 11 311 111 HOH HOH . 
Q 7 HOH B 12 312 85 HOH HOH . 
Q 7 HOH B 13 313 56 HOH HOH . 
Q 7 HOH B 14 314 112 HOH HOH . 
Q 7 HOH B 15 315 68 HOH HOH . 
Q 7 HOH B 16 316 48 HOH HOH . 
Q 7 HOH B 17 317 33 HOH HOH . 
Q 7 HOH B 18 318 39 HOH HOH . 
Q 7 HOH B 19 319 63 HOH HOH . 
Q 7 HOH B 20 320 117 HOH HOH . 
Q 7 HOH B 21 321 113 HOH HOH . 
Q 7 HOH B 22 322 110 HOH HOH . 
Q 7 HOH B 23 323 99 HOH HOH . 
Q 7 HOH B 24 324 62 HOH HOH . 
Q 7 HOH B 25 325 26 HOH HOH . 
R 7 HOH C 1 401 80 HOH HOH . 
R 7 HOH C 2 402 98 HOH HOH . 
R 7 HOH C 3 403 38 HOH HOH . 
R 7 HOH C 4 404 11 HOH HOH . 
R 7 HOH C 5 405 10 HOH HOH . 
R 7 HOH C 6 406 7 HOH HOH . 
R 7 HOH C 7 407 6 HOH HOH . 
R 7 HOH C 8 408 60 HOH HOH . 
R 7 HOH C 9 409 66 HOH HOH . 
R 7 HOH C 10 410 61 HOH HOH . 
R 7 HOH C 11 411 71 HOH HOH . 
R 7 HOH C 12 412 20 HOH HOH . 
S 7 HOH D 1 301 12 HOH HOH . 
S 7 HOH D 2 302 13 HOH HOH . 
S 7 HOH D 3 303 14 HOH HOH . 
S 7 HOH D 4 304 17 HOH HOH . 
T 7 HOH E 1 401 88 HOH HOH . 
T 7 HOH E 2 402 42 HOH HOH . 
T 7 HOH E 3 403 9 HOH HOH . 
T 7 HOH E 4 404 55 HOH HOH . 
T 7 HOH E 5 405 25 HOH HOH . 
T 7 HOH E 6 406 81 HOH HOH . 
T 7 HOH E 7 407 8 HOH HOH . 
T 7 HOH E 8 408 59 HOH HOH . 
T 7 HOH E 9 409 118 HOH HOH . 
T 7 HOH E 10 410 77 HOH HOH . 
T 7 HOH E 11 411 93 HOH HOH . 
U 7 HOH F 1 301 129 HOH HOH . 
U 7 HOH F 2 302 74 HOH HOH . 
U 7 HOH F 3 303 36 HOH HOH . 
U 7 HOH F 4 304 128 HOH HOH . 
U 7 HOH F 5 305 126 HOH HOH . 
U 7 HOH F 6 306 130 HOH HOH . 
U 7 HOH F 7 307 79 HOH HOH . 
U 7 HOH F 8 308 119 HOH HOH . 
U 7 HOH F 9 309 122 HOH HOH . 
U 7 HOH F 10 310 123 HOH HOH . 
U 7 HOH F 11 311 124 HOH HOH . 
U 7 HOH F 12 312 58 HOH HOH . 
U 7 HOH F 13 313 65 HOH HOH . 
U 7 HOH F 14 314 72 HOH HOH . 
U 7 HOH F 15 315 121 HOH HOH . 
U 7 HOH F 16 316 37 HOH HOH . 
U 7 HOH F 17 317 52 HOH HOH . 
U 7 HOH F 18 318 120 HOH HOH . 
U 7 HOH F 19 319 15 HOH HOH . 
U 7 HOH F 20 320 70 HOH HOH . 
U 7 HOH F 21 321 127 HOH HOH . 
U 7 HOH F 22 322 86 HOH HOH . 
U 7 HOH F 23 323 19 HOH HOH . 
U 7 HOH F 24 324 89 HOH HOH . 
U 7 HOH F 25 325 18 HOH HOH . 
V 7 HOH G 1 301 134 HOH HOH . 
V 7 HOH G 2 302 133 HOH HOH . 
V 7 HOH G 3 303 125 HOH HOH . 
V 7 HOH G 4 304 75 HOH HOH . 
V 7 HOH G 5 305 78 HOH HOH . 
V 7 HOH G 6 306 57 HOH HOH . 
V 7 HOH G 7 307 76 HOH HOH . 
V 7 HOH G 8 308 136 HOH HOH . 
V 7 HOH G 9 309 135 HOH HOH . 
V 7 HOH G 10 310 73 HOH HOH . 
V 7 HOH G 11 311 131 HOH HOH . 
V 7 HOH G 12 312 132 HOH HOH . 
V 7 HOH G 13 313 30 HOH HOH . 
W 7 HOH H 1 301 139 HOH HOH . 
W 7 HOH H 2 302 140 HOH HOH . 
W 7 HOH H 3 303 27 HOH HOH . 
W 7 HOH H 4 304 47 HOH HOH . 
W 7 HOH H 5 305 54 HOH HOH . 
W 7 HOH H 6 306 142 HOH HOH . 
W 7 HOH H 7 307 138 HOH HOH . 
W 7 HOH H 8 308 34 HOH HOH . 
W 7 HOH H 9 309 137 HOH HOH . 
W 7 HOH H 10 310 40 HOH HOH . 
W 7 HOH H 11 311 141 HOH HOH . 
W 7 HOH H 12 312 44 HOH HOH . 
W 7 HOH H 13 313 64 HOH HOH . 
W 7 HOH H 14 314 16 HOH HOH . 
X 7 HOH I 1 301 143 HOH HOH . 
X 7 HOH I 2 302 28 HOH HOH . 
X 7 HOH I 3 303 49 HOH HOH . 
X 7 HOH I 4 304 23 HOH HOH . 
X 7 HOH I 5 305 35 HOH HOH . 
X 7 HOH I 6 306 83 HOH HOH . 
X 7 HOH I 7 307 29 HOH HOH . 
X 7 HOH I 8 308 90 HOH HOH . 
X 7 HOH I 9 309 53 HOH HOH . 
X 7 HOH I 10 310 51 HOH HOH . 
X 7 HOH I 11 311 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 4 50.57 8.692 100.173 1 67.76 ? C1 GOL 302 C 1 
HETATM 2 O O1 GOL . . . L 4 50.098 8.371 101.468 1 77.41 ? O1 GOL 302 C 1 
HETATM 3 C C2 GOL . . . L 4 52.058 8.352 100.078 1 74.35 ? C2 GOL 302 C 1 
HETATM 4 O O2 GOL . . . L 4 52.801 8.79 101.218 1 65.92 ? O2 GOL 302 C 1 
HETATM 5 C C3 GOL . . . L 4 52.225 6.857 99.828 1 65.82 ? C3 GOL 302 C 1 
HETATM 6 O O3 GOL . . . L 4 53.524 6.643 99.315 1 71.02 ? O3 GOL 302 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           442 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           6 
#