data_5H3A # _model_server_result.job_id Jgmx5SDB2VZrj-ZoV75QFw _model_server_result.datetime_utc '2024-11-24 22:40:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5H3A # _exptl.entry_id 5H3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TOMUDEX _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.24 _cell.angle_gamma 90 _cell.entry_id 5H3A _cell.length_a 63.41 _cell.length_b 79.539 _cell.length_c 67.283 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H22 N4 O6 S' _chem_comp.formula_weight 458.488 _chem_comp.id D16 _chem_comp.mon_nstd_flag . _chem_comp.name TOMUDEX _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ZD1694;Raltitrexed # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 D16 sing 83 n n N1 C8A D16 sing 84 n n N1 HN1 D16 sing 85 n n C2 CM2 D16 sing 86 n n C2 N3 D16 doub 87 n n CM2 HM21 D16 sing 88 n n CM2 HM22 D16 sing 89 n n CM2 HM23 D16 sing 90 n n N3 C4 D16 sing 91 n n C4 O4 D16 doub 92 n n C4 C4A D16 sing 93 n n C4A C5 D16 doub 94 n y C4A C8A D16 sing 95 n y C5 C6 D16 sing 96 n y C5 H5 D16 sing 97 n n C6 C7 D16 doub 98 n y C6 C9 D16 sing 99 n n C7 C8 D16 sing 100 n y C7 H7 D16 sing 101 n n C8 C8A D16 doub 102 n y C8 H8 D16 sing 103 n n C9 N10 D16 sing 104 n n C9 H91 D16 sing 105 n n C9 H92 D16 sing 106 n n N10 C14 D16 sing 107 n n N10 CP1 D16 sing 108 n n C11 S13 D16 sing 109 n y C11 C16 D16 doub 110 n y C11 C D16 sing 111 n n S13 C14 D16 sing 112 n y C14 C15 D16 doub 113 n y C15 C16 D16 sing 114 n y C15 H15 D16 sing 115 n n C16 H16 D16 sing 116 n n C O D16 doub 117 n n C N D16 sing 118 n n N CA D16 sing 119 n n N HN D16 sing 120 n n CA CB D16 sing 121 n n CA CT D16 sing 122 n n CA HA D16 sing 123 n n CB CG D16 sing 124 n n CB HB1 D16 sing 125 n n CB HB2 D16 sing 126 n n CG CD D16 sing 127 n n CG HG1 D16 sing 128 n n CG HG2 D16 sing 129 n n CD OE1 D16 doub 130 n n CD OE2 D16 sing 131 n n OE2 HOE2 D16 sing 132 n n CT O1 D16 doub 133 n n CT O2 D16 sing 134 n n O2 HO2 D16 sing 135 n n CP1 HP11 D16 sing 136 n n CP1 HP12 D16 sing 137 n n CP1 HP13 D16 sing 138 n n # _atom_sites.entry_id 5H3A _atom_sites.fract_transf_matrix[1][1] 0.01577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007775 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 D16 A 1 401 414 D16 D16 . D 3 UMP A 1 402 314 UMP UMP . E 2 D16 B 1 401 415 D16 D16 . F 3 UMP B 1 402 315 UMP UMP . G 4 HOH A 1 501 4 HOH HOH . G 4 HOH A 2 502 20 HOH HOH . G 4 HOH A 3 503 9 HOH HOH . G 4 HOH A 4 504 8 HOH HOH . G 4 HOH A 5 505 33 HOH HOH . G 4 HOH A 6 506 3 HOH HOH . G 4 HOH A 7 507 43 HOH HOH . G 4 HOH A 8 508 12 HOH HOH . G 4 HOH A 9 509 30 HOH HOH . G 4 HOH A 10 510 19 HOH HOH . G 4 HOH A 11 511 17 HOH HOH . G 4 HOH A 12 512 11 HOH HOH . G 4 HOH A 13 513 18 HOH HOH . G 4 HOH A 14 514 6 HOH HOH . G 4 HOH A 15 515 45 HOH HOH . G 4 HOH A 16 516 47 HOH HOH . G 4 HOH A 17 517 46 HOH HOH . G 4 HOH A 18 518 2 HOH HOH . G 4 HOH A 19 519 25 HOH HOH . H 4 HOH B 1 501 10 HOH HOH . H 4 HOH B 2 502 21 HOH HOH . H 4 HOH B 3 503 32 HOH HOH . H 4 HOH B 4 504 39 HOH HOH . H 4 HOH B 5 505 42 HOH HOH . H 4 HOH B 6 506 41 HOH HOH . H 4 HOH B 7 507 1 HOH HOH . H 4 HOH B 8 508 29 HOH HOH . H 4 HOH B 9 509 5 HOH HOH . H 4 HOH B 10 510 24 HOH HOH . H 4 HOH B 11 511 38 HOH HOH . H 4 HOH B 12 512 37 HOH HOH . H 4 HOH B 13 513 22 HOH HOH . H 4 HOH B 14 514 15 HOH HOH . H 4 HOH B 15 515 7 HOH HOH . H 4 HOH B 16 516 13 HOH HOH . H 4 HOH B 17 517 28 HOH HOH . H 4 HOH B 18 518 44 HOH HOH . H 4 HOH B 19 519 23 HOH HOH . H 4 HOH B 20 520 40 HOH HOH . H 4 HOH B 21 521 14 HOH HOH . H 4 HOH B 22 522 27 HOH HOH . H 4 HOH B 23 523 16 HOH HOH . H 4 HOH B 24 524 31 HOH HOH . H 4 HOH B 25 525 36 HOH HOH . H 4 HOH B 26 526 26 HOH HOH . H 4 HOH B 27 527 34 HOH HOH . H 4 HOH B 28 528 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D16 . . . C 2 46.732 -14.502 46.492 1 58.93 ? N1 D16 401 A 1 HETATM 2 C C2 D16 . . . C 2 47.898 -14.941 46.937 1 60.88 ? C2 D16 401 A 1 HETATM 3 C CM2 D16 . . . C 2 47.996 -16.327 47.478 1 52.76 ? CM2 D16 401 A 1 HETATM 4 N N3 D16 . . . C 2 48.993 -14.181 46.916 1 60.17 ? N3 D16 401 A 1 HETATM 5 C C4 D16 . . . C 2 48.968 -12.947 46.444 1 56.11 ? C4 D16 401 A 1 HETATM 6 O O4 D16 . . . C 2 49.993 -12.292 46.452 1 56.66 ? O4 D16 401 A 1 HETATM 7 C C4A D16 . . . C 2 47.709 -12.397 45.947 1 57.38 ? C4A D16 401 A 1 HETATM 8 C C5 D16 . . . C 2 47.562 -11.13 45.448 1 57.81 ? C5 D16 401 A 1 HETATM 9 C C6 D16 . . . C 2 46.315 -10.743 44.994 1 60.09 ? C6 D16 401 A 1 HETATM 10 C C7 D16 . . . C 2 45.231 -11.593 45.053 1 57.58 ? C7 D16 401 A 1 HETATM 11 C C8 D16 . . . C 2 45.348 -12.864 45.561 1 54.21 ? C8 D16 401 A 1 HETATM 12 C C8A D16 . . . C 2 46.567 -13.289 46.008 1 57.41 ? C8A D16 401 A 1 HETATM 13 C C9 D16 . . . C 2 46.073 -9.387 44.417 1 53.18 ? C9 D16 401 A 1 HETATM 14 N N10 D16 . . . C 2 47.285 -8.663 44.169 1 51.95 ? N10 D16 401 A 1 HETATM 15 C C11 D16 . . . C 2 49.482 -9.648 41.244 1 65.97 ? C11 D16 401 A 1 HETATM 16 S S13 D16 . . . C 2 48.003 -10.154 41.966 1 77.01 ? S13 D16 401 A 1 HETATM 17 C C14 D16 . . . C 2 48.171 -8.925 43.152 1 58.51 ? C14 D16 401 A 1 HETATM 18 C C15 D16 . . . C 2 49.304 -8.177 42.972 1 52.65 ? C15 D16 401 A 1 HETATM 19 C C16 D16 . . . C 2 50.048 -8.596 41.9 1 55.09 ? C16 D16 401 A 1 HETATM 20 C C D16 . . . C 2 49.917 -10.387 40.042 1 73.53 ? C D16 401 A 1 HETATM 21 O O D16 . . . C 2 49.411 -11.447 39.795 1 78.85 ? O D16 401 A 1 HETATM 22 N N D16 . . . C 2 50.826 -9.858 39.247 1 67.98 ? N D16 401 A 1 HETATM 23 C CA D16 . . . C 2 51.254 -10.526 38.045 1 73.81 ? CA D16 401 A 1 HETATM 24 C CB D16 . . . C 2 50.952 -9.722 36.792 1 73.39 ? CB D16 401 A 1 HETATM 25 C CG D16 . . . C 2 50.416 -10.614 35.683 1 76.21 ? CG D16 401 A 1 HETATM 26 C CD D16 . . . C 2 50.731 -10.065 34.31 1 80.93 ? CD D16 401 A 1 HETATM 27 O OE1 D16 . . . C 2 51.742 -9.362 34.17 1 78 ? OE1 D16 401 A 1 HETATM 28 O OE2 D16 . . . C 2 49.976 -10.332 33.355 1 77.29 ? OE2 D16 401 A 1 HETATM 29 C CT D16 . . . C 2 52.711 -10.815 38.139 1 82.3 ? CT D16 401 A 1 HETATM 30 O O1 D16 . . . C 2 53.396 -10.086 38.865 1 80.57 ? O1 D16 401 A 1 HETATM 31 O O2 D16 . . . C 2 53.189 -11.775 37.513 1 83.55 ? O2 D16 401 A 1 HETATM 32 C CP1 D16 . . . C 2 47.468 -7.55 45.057 1 50.68 ? CP1 D16 401 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #