data_5H3E
#
_model_server_result.job_id            qTFppvqGkenHuJQgQt-tEQ 
_model_server_result.datetime_utc      '2024-11-06 12:26:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h3e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5H3E 
#
_exptl.entry_id    5H3E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ISOCITRIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5H3E 
_cell.length_a            58.15 
_cell.length_b            58.15 
_cell.length_c            206.915 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H3E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 253 A ASP 291 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc2 A OD1 ASP 276 A ASP 314 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc3 C MG MG . A MG 501 1_555 D O2 ICT . A ICT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc4 C MG MG . A MG 501 1_555 D O7 ICT . A ICT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc5 C MG MG . A MG 501 1_555 B OD2 ASP 253 B ASP 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc6 B OD1 ASP 276 B ASP 314 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc7 E MG MG . B MG 501 1_555 F O7 ICT . B ICT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc8 E MG MG . B MG 501 1_555 F O1 ICT . B ICT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                ICT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ISOCITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 ICT doub 152 n n 
C1 O2 ICT sing 153 n n 
C1 C2 ICT sing 154 n n 
O2 HO2 ICT sing 155 n n 
C2 O7 ICT sing 156 n n 
C2 C3 ICT sing 157 n n 
C2 H2 ICT sing 158 n n 
O7 HO7 ICT sing 159 n n 
C3 C4 ICT sing 160 n n 
C3 C6 ICT sing 161 n n 
C3 H3 ICT sing 162 n n 
C4 C5 ICT sing 163 n n 
C4 H41 ICT sing 164 n n 
C4 H42 ICT sing 165 n n 
C5 O3 ICT doub 166 n n 
C5 O4 ICT sing 167 n n 
O4 HO4 ICT sing 168 n n 
C6 O5 ICT doub 169 n n 
C6 O6 ICT sing 170 n n 
O6 HO6 ICT sing 171 n n 
#
_atom_sites.entry_id                     5H3E 
_atom_sites.fract_transf_matrix[1][1]    0.017197 
_atom_sites.fract_transf_matrix[1][2]    0.009929 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004833 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 501 501 MG MG . 
D 3 ICT A 1 502 502 ICT ICT . 
E 2 MG B 1 501 501 MG MG . 
F 3 ICT B 1 502 502 ICT ICT . 
G 4 HOH A 1 601 601 HOH HOH . 
G 4 HOH A 2 602 602 HOH HOH . 
G 4 HOH A 3 603 603 HOH HOH . 
G 4 HOH A 4 604 604 HOH HOH . 
G 4 HOH A 5 605 605 HOH HOH . 
G 4 HOH A 6 606 606 HOH HOH . 
G 4 HOH A 7 607 607 HOH HOH . 
G 4 HOH A 8 608 608 HOH HOH . 
G 4 HOH A 9 609 609 HOH HOH . 
G 4 HOH A 10 610 610 HOH HOH . 
G 4 HOH A 11 611 611 HOH HOH . 
G 4 HOH A 12 612 612 HOH HOH . 
G 4 HOH A 13 613 613 HOH HOH . 
G 4 HOH A 14 614 614 HOH HOH . 
G 4 HOH A 15 615 615 HOH HOH . 
G 4 HOH A 16 616 616 HOH HOH . 
G 4 HOH A 17 617 617 HOH HOH . 
G 4 HOH A 18 618 618 HOH HOH . 
G 4 HOH A 19 619 619 HOH HOH . 
G 4 HOH A 20 620 620 HOH HOH . 
G 4 HOH A 21 621 621 HOH HOH . 
G 4 HOH A 22 622 622 HOH HOH . 
G 4 HOH A 23 623 623 HOH HOH . 
G 4 HOH A 24 624 624 HOH HOH . 
G 4 HOH A 25 625 625 HOH HOH . 
G 4 HOH A 26 626 626 HOH HOH . 
G 4 HOH A 27 627 627 HOH HOH . 
G 4 HOH A 28 628 628 HOH HOH . 
G 4 HOH A 29 629 629 HOH HOH . 
G 4 HOH A 30 630 630 HOH HOH . 
G 4 HOH A 31 631 631 HOH HOH . 
G 4 HOH A 32 632 632 HOH HOH . 
G 4 HOH A 33 633 633 HOH HOH . 
G 4 HOH A 34 634 634 HOH HOH . 
G 4 HOH A 35 635 635 HOH HOH . 
G 4 HOH A 36 636 636 HOH HOH . 
G 4 HOH A 37 637 637 HOH HOH . 
G 4 HOH A 38 638 638 HOH HOH . 
G 4 HOH A 39 639 639 HOH HOH . 
G 4 HOH A 40 640 640 HOH HOH . 
G 4 HOH A 41 641 641 HOH HOH . 
G 4 HOH A 42 642 642 HOH HOH . 
G 4 HOH A 43 643 643 HOH HOH . 
G 4 HOH A 44 644 644 HOH HOH . 
G 4 HOH A 45 645 645 HOH HOH . 
G 4 HOH A 46 646 646 HOH HOH . 
G 4 HOH A 47 647 647 HOH HOH . 
G 4 HOH A 48 648 648 HOH HOH . 
G 4 HOH A 49 649 649 HOH HOH . 
G 4 HOH A 50 650 650 HOH HOH . 
G 4 HOH A 51 651 651 HOH HOH . 
G 4 HOH A 52 652 652 HOH HOH . 
G 4 HOH A 53 653 653 HOH HOH . 
G 4 HOH A 54 654 654 HOH HOH . 
G 4 HOH A 55 655 655 HOH HOH . 
G 4 HOH A 56 656 656 HOH HOH . 
G 4 HOH A 57 657 657 HOH HOH . 
G 4 HOH A 58 658 658 HOH HOH . 
H 4 HOH B 1 601 601 HOH HOH . 
H 4 HOH B 2 602 602 HOH HOH . 
H 4 HOH B 3 603 603 HOH HOH . 
H 4 HOH B 4 604 604 HOH HOH . 
H 4 HOH B 5 605 605 HOH HOH . 
H 4 HOH B 6 606 606 HOH HOH . 
H 4 HOH B 7 607 607 HOH HOH . 
H 4 HOH B 8 608 608 HOH HOH . 
H 4 HOH B 9 609 609 HOH HOH . 
H 4 HOH B 10 610 610 HOH HOH . 
H 4 HOH B 11 611 611 HOH HOH . 
H 4 HOH B 12 612 612 HOH HOH . 
H 4 HOH B 13 613 613 HOH HOH . 
H 4 HOH B 14 614 614 HOH HOH . 
H 4 HOH B 15 615 615 HOH HOH . 
H 4 HOH B 16 616 616 HOH HOH . 
H 4 HOH B 17 617 617 HOH HOH . 
H 4 HOH B 18 618 618 HOH HOH . 
H 4 HOH B 19 619 619 HOH HOH . 
H 4 HOH B 20 620 620 HOH HOH . 
H 4 HOH B 21 621 621 HOH HOH . 
H 4 HOH B 22 622 622 HOH HOH . 
H 4 HOH B 23 623 623 HOH HOH . 
H 4 HOH B 24 624 624 HOH HOH . 
H 4 HOH B 25 625 625 HOH HOH . 
H 4 HOH B 26 626 626 HOH HOH . 
H 4 HOH B 27 627 627 HOH HOH . 
H 4 HOH B 28 628 628 HOH HOH . 
H 4 HOH B 29 629 629 HOH HOH . 
H 4 HOH B 30 630 630 HOH HOH . 
H 4 HOH B 31 631 631 HOH HOH . 
H 4 HOH B 32 632 632 HOH HOH . 
H 4 HOH B 33 633 633 HOH HOH . 
H 4 HOH B 34 634 634 HOH HOH . 
H 4 HOH B 35 635 635 HOH HOH . 
H 4 HOH B 36 636 636 HOH HOH . 
H 4 HOH B 37 637 637 HOH HOH . 
H 4 HOH B 38 638 638 HOH HOH . 
H 4 HOH B 39 639 639 HOH HOH . 
H 4 HOH B 40 640 640 HOH HOH . 
H 4 HOH B 41 641 641 HOH HOH . 
H 4 HOH B 42 642 642 HOH HOH . 
H 4 HOH B 43 643 643 HOH HOH . 
H 4 HOH B 44 644 644 HOH HOH . 
H 4 HOH B 45 645 645 HOH HOH . 
H 4 HOH B 46 646 646 HOH HOH . 
H 4 HOH B 47 647 647 HOH HOH . 
H 4 HOH B 48 648 648 HOH HOH . 
H 4 HOH B 49 649 649 HOH HOH . 
H 4 HOH B 50 650 650 HOH HOH . 
H 4 HOH B 51 651 651 HOH HOH . 
H 4 HOH B 52 652 652 HOH HOH . 
H 4 HOH B 53 653 653 HOH HOH . 
H 4 HOH B 54 654 654 HOH HOH . 
H 4 HOH B 55 655 655 HOH HOH . 
H 4 HOH B 56 656 656 HOH HOH . 
H 4 HOH B 57 657 657 HOH HOH . 
H 4 HOH B 58 658 658 HOH HOH . 
H 4 HOH B 59 659 659 HOH HOH . 
H 4 HOH B 60 660 660 HOH HOH . 
H 4 HOH B 61 661 661 HOH HOH . 
H 4 HOH B 62 662 662 HOH HOH . 
H 4 HOH B 63 663 663 HOH HOH . 
H 4 HOH B 64 664 664 HOH HOH . 
H 4 HOH B 65 665 665 HOH HOH . 
H 4 HOH B 66 666 666 HOH HOH . 
H 4 HOH B 67 667 667 HOH HOH . 
H 4 HOH B 68 668 668 HOH HOH . 
H 4 HOH B 69 669 669 HOH HOH . 
H 4 HOH B 70 670 670 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ICT . . . D 3 -35.003 5.081 0.194 1 32.65 ? C1 ICT 502 A 1 
HETATM 2 O O1 ICT . . . D 3 -34.18 4.193 -0.127 1 32.89 ? O1 ICT 502 A 1 
HETATM 3 O O2 ICT . . . D 3 -34.788 5.873 1.137 1 31.9 ? O2 ICT 502 A 1 
HETATM 4 C C2 ICT . . . D 3 -36.294 5.208 -0.567 1 32.83 ? C2 ICT 502 A 1 
HETATM 5 O O7 ICT . . . D 3 -37.189 6.095 0.118 1 32.67 ? O7 ICT 502 A 1 
HETATM 6 C C3 ICT . . . D 3 -36.973 3.851 -0.753 1 33.38 ? C3 ICT 502 A 1 
HETATM 7 C C4 ICT . . . D 3 -38.138 4.017 -1.738 1 34 ? C4 ICT 502 A 1 
HETATM 8 C C5 ICT . . . D 3 -38.693 2.693 -2.204 1 34.4 ? C5 ICT 502 A 1 
HETATM 9 O O3 ICT . . . D 3 -39.88 2.656 -2.595 1 34.91 ? O3 ICT 502 A 1 
HETATM 10 O O4 ICT . . . D 3 -37.951 1.69 -2.193 1 34.49 ? O4 ICT 502 A 1 
HETATM 11 C C6 ICT . . . D 3 -37.417 3.269 0.571 1 33.48 ? C6 ICT 502 A 1 
HETATM 12 O O5 ICT . . . D 3 -38.577 3.495 0.972 1 35.57 ? O5 ICT 502 A 1 
HETATM 13 O O6 ICT . . . D 3 -36.619 2.577 1.244 1 32.1 ? O6 ICT 502 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           13 
#