data_5H3F # _model_server_result.job_id McyJ78QyZltqPsKSs_5FYg _model_server_result.datetime_utc '2024-11-06 10:29:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5H3F # _exptl.entry_id 5H3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOCITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H3F _cell.length_a 135.853 _cell.length_b 135.853 _cell.length_c 220.162 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 253 A ASP 291 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc2 A OD1 ASP 276 A ASP 314 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 C O2 ICT . A ICT 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 C O7 ICT . A ICT 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc5 D MG MG . A MG 502 1_555 B OD2 ASP 253 B ASP 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc6 B OD1 ASP 276 B ASP 314 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc7 E O1 ICT . B ICT 501 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc8 E O7 ICT . B ICT 501 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id ICT _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOCITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 ICT doub 152 n n C1 O2 ICT sing 153 n n C1 C2 ICT sing 154 n n O2 HO2 ICT sing 155 n n C2 O7 ICT sing 156 n n C2 C3 ICT sing 157 n n C2 H2 ICT sing 158 n n O7 HO7 ICT sing 159 n n C3 C4 ICT sing 160 n n C3 C6 ICT sing 161 n n C3 H3 ICT sing 162 n n C4 C5 ICT sing 163 n n C4 H41 ICT sing 164 n n C4 H42 ICT sing 165 n n C5 O3 ICT doub 166 n n C5 O4 ICT sing 167 n n O4 HO4 ICT sing 168 n n C6 O5 ICT doub 169 n n C6 O6 ICT sing 170 n n O6 HO6 ICT sing 171 n n # _atom_sites.entry_id 5H3F _atom_sites.fract_transf_matrix[1][1] 0.007361 _atom_sites.fract_transf_matrix[1][2] 0.00425 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ICT A 1 501 501 ICT ICT . D 3 MG A 1 502 502 MG MG . E 2 ICT B 1 501 501 ICT ICT . F 3 MG B 1 502 502 MG MG . G 4 HOH B 1 601 601 HOH HOH . G 4 HOH B 2 602 602 HOH HOH . G 4 HOH B 3 603 603 HOH HOH . G 4 HOH B 4 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ICT . . . E 2 -77.828 32.347 61.15 1 132.78 ? C1 ICT 501 B 1 HETATM 2 O O1 ICT . . . E 2 -77.431 32.975 60.143 1 129.16 ? O1 ICT 501 B 1 HETATM 3 O O2 ICT . . . E 2 -78.958 32.548 61.65 1 125.83 ? O2 ICT 501 B 1 HETATM 4 C C2 ICT . . . E 2 -76.91 31.33 61.777 1 139.85 ? C2 ICT 501 B 1 HETATM 5 O O7 ICT . . . E 2 -75.898 30.94 60.832 1 139.09 ? O7 ICT 501 B 1 HETATM 6 C C3 ICT . . . E 2 -77.692 30.105 62.279 1 145.24 ? C3 ICT 501 B 1 HETATM 7 C C4 ICT . . . E 2 -76.745 29.102 62.944 1 150.4 ? C4 ICT 501 B 1 HETATM 8 C C5 ICT . . . E 2 -77.491 28.036 63.719 1 150.31 ? C5 ICT 501 B 1 HETATM 9 O O3 ICT . . . E 2 -77.188 26.839 63.516 1 152.52 ? O3 ICT 501 B 1 HETATM 10 O O4 ICT . . . E 2 -78.373 28.383 64.535 1 146.89 ? O4 ICT 501 B 1 HETATM 11 C C6 ICT . . . E 2 -78.472 29.436 61.174 1 143.14 ? C6 ICT 501 B 1 HETATM 12 O O5 ICT . . . E 2 -77.946 29.294 60.048 1 142.49 ? O5 ICT 501 B 1 HETATM 13 O O6 ICT . . . E 2 -79.632 29.045 61.431 1 137.96 ? O6 ICT 501 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #