data_5H3L # _model_server_result.job_id 0z59GfTSHHSt-dWT0-AQew _model_server_result.datetime_utc '2025-04-24 08:15:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5H3L # _exptl.entry_id 5H3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H3L _cell.length_a 86.5 _cell.length_b 86.5 _cell.length_c 132.1 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 21 A HIS 21 1_555 A N CME 22 A CME 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C CME 22 A CME 22 1_555 A N LYS 23 A LYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B C HIS 21 B HIS 21 1_555 B N CME 22 B CME 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 B C CME 22 B CME 22 1_555 B N LYS 23 B LYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 C C HIS 21 C HIS 21 1_555 C N CME 22 C CME 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 C C CME 22 C CME 22 1_555 C N LYS 23 C LYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 91 n n C O2 FMT sing 92 n n C H FMT sing 93 n n O2 HO2 FMT sing 94 n n # _atom_sites.entry_id 5H3L _atom_sites.fract_transf_matrix[1][1] 0.011561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FMT A 1 201 1 FMT FMT . E 2 FMT B 1 201 3 FMT FMT . F 2 FMT C 1 201 2 FMT FMT . G 3 HOH A 1 301 283 HOH HOH . G 3 HOH A 2 302 80 HOH HOH . G 3 HOH A 3 303 19 HOH HOH . G 3 HOH A 4 304 306 HOH HOH . G 3 HOH A 5 305 143 HOH HOH . G 3 HOH A 6 306 303 HOH HOH . G 3 HOH A 7 307 304 HOH HOH . G 3 HOH A 8 308 5 HOH HOH . G 3 HOH A 9 309 70 HOH HOH . G 3 HOH A 10 310 107 HOH HOH . G 3 HOH A 11 311 35 HOH HOH . G 3 HOH A 12 312 39 HOH HOH . G 3 HOH A 13 313 40 HOH HOH . G 3 HOH A 14 314 314 HOH HOH . G 3 HOH A 15 315 45 HOH HOH . G 3 HOH A 16 316 14 HOH HOH . G 3 HOH A 17 317 41 HOH HOH . G 3 HOH A 18 318 27 HOH HOH . G 3 HOH A 19 319 37 HOH HOH . G 3 HOH A 20 320 282 HOH HOH . G 3 HOH A 21 321 7 HOH HOH . G 3 HOH A 22 322 33 HOH HOH . G 3 HOH A 23 323 136 HOH HOH . G 3 HOH A 24 324 4 HOH HOH . G 3 HOH A 25 325 8 HOH HOH . G 3 HOH A 26 326 18 HOH HOH . G 3 HOH A 27 327 76 HOH HOH . G 3 HOH A 28 328 311 HOH HOH . G 3 HOH A 29 329 29 HOH HOH . G 3 HOH A 30 330 52 HOH HOH . G 3 HOH A 31 331 295 HOH HOH . G 3 HOH A 32 332 129 HOH HOH . G 3 HOH A 33 333 300 HOH HOH . G 3 HOH A 34 334 299 HOH HOH . G 3 HOH A 35 335 276 HOH HOH . G 3 HOH A 36 336 84 HOH HOH . G 3 HOH A 37 337 144 HOH HOH . G 3 HOH A 38 338 28 HOH HOH . G 3 HOH A 39 339 279 HOH HOH . G 3 HOH A 40 340 178 HOH HOH . G 3 HOH A 41 341 9 HOH HOH . H 3 HOH B 1 301 20 HOH HOH . H 3 HOH B 2 302 111 HOH HOH . H 3 HOH B 3 303 61 HOH HOH . H 3 HOH B 4 304 77 HOH HOH . H 3 HOH B 5 305 152 HOH HOH . H 3 HOH B 6 306 43 HOH HOH . H 3 HOH B 7 307 301 HOH HOH . H 3 HOH B 8 308 24 HOH HOH . H 3 HOH B 9 309 112 HOH HOH . H 3 HOH B 10 310 34 HOH HOH . H 3 HOH B 11 311 11 HOH HOH . H 3 HOH B 12 312 16 HOH HOH . H 3 HOH B 13 313 32 HOH HOH . H 3 HOH B 14 314 53 HOH HOH . H 3 HOH B 15 315 232 HOH HOH . H 3 HOH B 16 316 115 HOH HOH . H 3 HOH B 17 317 313 HOH HOH . H 3 HOH B 18 318 12 HOH HOH . H 3 HOH B 19 319 102 HOH HOH . H 3 HOH B 20 320 49 HOH HOH . H 3 HOH B 21 321 1 HOH HOH . H 3 HOH B 22 322 294 HOH HOH . H 3 HOH B 23 323 126 HOH HOH . H 3 HOH B 24 324 17 HOH HOH . H 3 HOH B 25 325 73 HOH HOH . H 3 HOH B 26 326 88 HOH HOH . H 3 HOH B 27 327 280 HOH HOH . H 3 HOH B 28 328 63 HOH HOH . H 3 HOH B 29 329 270 HOH HOH . H 3 HOH B 30 330 72 HOH HOH . H 3 HOH B 31 331 42 HOH HOH . H 3 HOH B 32 332 96 HOH HOH . H 3 HOH B 33 333 161 HOH HOH . H 3 HOH B 34 334 56 HOH HOH . H 3 HOH B 35 335 298 HOH HOH . H 3 HOH B 36 336 272 HOH HOH . H 3 HOH B 37 337 285 HOH HOH . H 3 HOH B 38 338 277 HOH HOH . H 3 HOH B 39 339 195 HOH HOH . H 3 HOH B 40 340 58 HOH HOH . H 3 HOH B 41 341 243 HOH HOH . H 3 HOH B 42 342 21 HOH HOH . H 3 HOH B 43 343 97 HOH HOH . H 3 HOH B 44 344 252 HOH HOH . I 3 HOH C 1 301 15 HOH HOH . I 3 HOH C 2 302 55 HOH HOH . I 3 HOH C 3 303 110 HOH HOH . I 3 HOH C 4 304 91 HOH HOH . I 3 HOH C 5 305 62 HOH HOH . I 3 HOH C 6 306 274 HOH HOH . I 3 HOH C 7 307 36 HOH HOH . I 3 HOH C 8 308 51 HOH HOH . I 3 HOH C 9 309 13 HOH HOH . I 3 HOH C 10 310 78 HOH HOH . I 3 HOH C 11 311 59 HOH HOH . I 3 HOH C 12 312 30 HOH HOH . I 3 HOH C 13 313 86 HOH HOH . I 3 HOH C 14 314 79 HOH HOH . I 3 HOH C 15 315 308 HOH HOH . I 3 HOH C 16 316 2 HOH HOH . I 3 HOH C 17 317 302 HOH HOH . I 3 HOH C 18 318 6 HOH HOH . I 3 HOH C 19 319 68 HOH HOH . I 3 HOH C 20 320 312 HOH HOH . I 3 HOH C 21 321 50 HOH HOH . I 3 HOH C 22 322 87 HOH HOH . I 3 HOH C 23 323 10 HOH HOH . I 3 HOH C 24 324 74 HOH HOH . I 3 HOH C 25 325 31 HOH HOH . I 3 HOH C 26 326 75 HOH HOH . I 3 HOH C 27 327 281 HOH HOH . I 3 HOH C 28 328 69 HOH HOH . I 3 HOH C 29 329 54 HOH HOH . I 3 HOH C 30 330 44 HOH HOH . I 3 HOH C 31 331 185 HOH HOH . I 3 HOH C 32 332 297 HOH HOH . I 3 HOH C 33 333 23 HOH HOH . I 3 HOH C 34 334 130 HOH HOH . I 3 HOH C 35 335 154 HOH HOH . I 3 HOH C 36 336 179 HOH HOH . I 3 HOH C 37 337 305 HOH HOH . I 3 HOH C 38 338 60 HOH HOH . I 3 HOH C 39 339 183 HOH HOH . I 3 HOH C 40 340 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . E 2 -7.126 -11.487 -22.099 1 26.9 ? C FMT 201 B 1 HETATM 2 O O1 FMT . . . E 2 -6.501 -10.779 -22.896 1 22.14 ? O1 FMT 201 B 1 HETATM 3 O O2 FMT . . . E 2 -6.682 -11.947 -21.038 1 28.34 ? O2 FMT 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #