data_5H3O # _model_server_result.job_id 7AeZjXzWulJM-AWbewW0cw _model_server_result.datetime_utc '2024-11-22 05:17:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 5H3O # _exptl.entry_id 5H3O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H3O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 235 n n PA O2A PCG doub 236 n n PA O5' PCG sing 237 n n PA O3' PCG sing 238 n n O1A HO1A PCG sing 239 n n O5' C5' PCG sing 240 n n C5' C4' PCG sing 241 n n C5' "H5'1" PCG sing 242 n n C5' "H5'2" PCG sing 243 n n C4' O4' PCG sing 244 n n C4' C3' PCG sing 245 n n C4' H4' PCG sing 246 n n O4' C1' PCG sing 247 n n C3' O3' PCG sing 248 n n C3' C2' PCG sing 249 n n C3' H3' PCG sing 250 n n C2' O2' PCG sing 251 n n C2' C1' PCG sing 252 n n C2' H2' PCG sing 253 n n O2' HO2' PCG sing 254 n n C1' N9 PCG sing 255 n n C1' H1' PCG sing 256 n n N9 C8 PCG sing 257 n y N9 C4 PCG sing 258 n y C8 N7 PCG doub 259 n y C8 H8 PCG sing 260 n n N7 C5 PCG sing 261 n y C5 C6 PCG sing 262 n n C5 C4 PCG doub 263 n y C6 O6 PCG doub 264 n n C6 N1 PCG sing 265 n n N1 C2 PCG sing 266 n n N1 HN1 PCG sing 267 n n C2 N2 PCG sing 268 n n C2 N3 PCG doub 269 n n N2 HN21 PCG sing 270 n n N2 HN22 PCG sing 271 n n N3 C4 PCG sing 272 n n # _atom_sites.entry_id 5H3O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PCG A 1 801 801 PCG PCG . F 3 NA A 1 802 2 NA NA . G 3 NA A 1 803 3 NA NA . H 2 PCG B 1 801 801 PCG PCG . I 3 NA B 1 802 1 NA NA . J 2 PCG C 1 801 801 PCG PCG . K 2 PCG D 1 801 801 PCG PCG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . E 2 89.19 82.065 147.234 1 100.6 ? PA PCG 801 A 1 HETATM 2 O O1A PCG . . . E 2 89.823 80.939 147.959 1 99.19 ? O1A PCG 801 A 1 HETATM 3 O O2A PCG . . . E 2 89.827 83.399 147.314 1 102.86 ? O2A PCG 801 A 1 HETATM 4 O O5' PCG . . . E 2 89.088 81.635 145.651 1 101.34 ? O5' PCG 801 A 1 HETATM 5 C C5' PCG . . . E 2 88.02 80.766 145.201 1 100.53 ? C5' PCG 801 A 1 HETATM 6 C C4' PCG . . . E 2 86.692 81.304 145.765 1 99.22 ? C4' PCG 801 A 1 HETATM 7 O O4' PCG . . . E 2 85.485 80.602 145.411 1 105.96 ? O4' PCG 801 A 1 HETATM 8 C C3' PCG . . . E 2 86.714 81.235 147.263 1 103.24 ? C3' PCG 801 A 1 HETATM 9 O O3' PCG . . . E 2 87.634 82.209 147.723 1 98.86 ? O3' PCG 801 A 1 HETATM 10 C C2' PCG . . . E 2 85.301 81.558 147.633 1 104.42 ? C2' PCG 801 A 1 HETATM 11 O O2' PCG . . . E 2 85.119 82.963 147.617 1 102.79 ? O2' PCG 801 A 1 HETATM 12 C C1' PCG . . . E 2 84.497 80.959 146.452 1 106.29 ? C1' PCG 801 A 1 HETATM 13 N N9 PCG . . . E 2 83.724 79.757 146.856 1 100.1 ? N9 PCG 801 A 1 HETATM 14 C C8 PCG . . . E 2 82.579 79.373 146.287 1 98.02 ? C8 PCG 801 A 1 HETATM 15 N N7 PCG . . . E 2 82.149 78.258 146.889 1 104.98 ? N7 PCG 801 A 1 HETATM 16 C C5 PCG . . . E 2 83.007 77.932 147.836 1 104.4 ? C5 PCG 801 A 1 HETATM 17 C C6 PCG . . . E 2 83.049 76.886 148.753 1 109.41 ? C6 PCG 801 A 1 HETATM 18 O O6 PCG . . . E 2 82.162 76.033 148.776 1 93.71 ? O6 PCG 801 A 1 HETATM 19 N N1 PCG . . . E 2 84.124 76.807 149.654 1 106.95 ? N1 PCG 801 A 1 HETATM 20 C C2 PCG . . . E 2 85.125 77.794 149.6 1 95.93 ? C2 PCG 801 A 1 HETATM 21 N N2 PCG . . . E 2 86.147 77.736 150.444 1 86.48 ? N2 PCG 801 A 1 HETATM 22 N N3 PCG . . . E 2 85.054 78.797 148.7 1 103.23 ? N3 PCG 801 A 1 HETATM 23 C C4 PCG . . . E 2 84.018 78.886 147.82 1 101.11 ? C4 PCG 801 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #