data_5H3Q # _model_server_result.job_id neRCq37mqcGn5PpP84F21Q _model_server_result.datetime_utc '2024-11-23 03:05:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5H3Q # _exptl.entry_id 5H3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.553 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3S,4R)-4-[3,4-bis(fluoranyl)phenyl]-1-(2-methoxyethyl)pyrrolidin-3-yl]-3-(5-ethoxy-4-methyl-2-phenyl-pyrazol-3-yl)urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H3Q _cell.length_a 140.845 _cell.length_b 157.195 _cell.length_c 52.306 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 107 A CYS 579 1_555 C S1 DTT . A DTT 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? covale ? covale2 A SG CYS 267 A CYS 739 1_555 D S1 DTT . A DTT 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc1 A OG SER 236 A SER 708 1_555 E NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc2 A OD1 ASP 237 A ASP 709 1_555 E NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 E NA NA . A NA 1004 1_555 F O HOH . A HOH 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? # _chem_comp.formula 'C26 H31 F2 N5 O3' _chem_comp.formula_weight 499.553 _chem_comp.id 7HF _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3S,4R)-4-[3,4-bis(fluoranyl)phenyl]-1-(2-methoxyethyl)pyrrolidin-3-yl]-3-(5-ethoxy-4-methyl-2-phenyl-pyrazol-3-yl)urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAL 7HF sing 1 n n CAL OAI 7HF sing 2 n n CBC CAC 7HF doub 3 n y CBC CBB 7HF sing 4 n y OAI CAX 7HF sing 5 n n CAC CAE 7HF sing 6 n y NAT CAX 7HF doub 7 n y NAT NAY 7HF sing 8 n y CBB CAH 7HF doub 9 n y CAX CAG 7HF sing 10 n y CAE NAY 7HF sing 11 n n CAE CAU 7HF doub 12 n y NAY CAV 7HF sing 13 n y CAH CAU 7HF sing 14 n y CAG CAV 7HF doub 15 n y CAG CBE 7HF sing 16 n n CAV NAO 7HF sing 17 n n OBA CAS 7HF doub 18 n n NAO CAS 7HF sing 19 n n CAS NAJ 7HF sing 20 n n CBI OAM 7HF sing 21 n n CAW OAM 7HF sing 22 n n CAW CBD 7HF sing 23 n n CAR CBH 7HF sing 24 n n CAR NAB 7HF sing 25 n n NAJ CBH 7HF sing 26 n n CBH CBJ 7HF sing 27 n n CBD NAB 7HF sing 28 n n NAB CAZ 7HF sing 29 n n CBJ CAZ 7HF sing 30 n n CBJ CAN 7HF sing 31 n n CAP CAN 7HF doub 32 n y CAP CAK 7HF sing 33 n y FBF CAK 7HF sing 34 n n CAN CAA 7HF sing 35 n y CAK CAQ 7HF doub 36 n y CAA CAD 7HF doub 37 n y CAQ CAD 7HF sing 38 n y CAQ FBG 7HF sing 39 n n CAP H1 7HF sing 40 n n CAD H2 7HF sing 41 n n CAA H3 7HF sing 42 n n CBJ H4 7HF sing 43 n n CAZ H5 7HF sing 44 n n CAZ H6 7HF sing 45 n n CBD H8 7HF sing 46 n n CBD H9 7HF sing 47 n n CAW H10 7HF sing 48 n n CAW H11 7HF sing 49 n n CBI H12 7HF sing 50 n n CBI H13 7HF sing 51 n n CBI H14 7HF sing 52 n n CAR H15 7HF sing 53 n n CAR H16 7HF sing 54 n n CBH H17 7HF sing 55 n n NAJ H18 7HF sing 56 n n NAO H19 7HF sing 57 n n CBE H20 7HF sing 58 n n CBE H21 7HF sing 59 n n CBE H22 7HF sing 60 n n CAL H23 7HF sing 61 n n CAL H24 7HF sing 62 n n CAF H25 7HF sing 63 n n CAF H26 7HF sing 64 n n CAF H27 7HF sing 65 n n CAU H28 7HF sing 66 n n CAH H29 7HF sing 67 n n CBB H30 7HF sing 68 n n CBC H31 7HF sing 69 n n CAC H32 7HF sing 70 n n # _atom_sites.entry_id 5H3Q _atom_sites.fract_transf_matrix[1][1] 0.0071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7HF A 1 1001 1001 7HF DRG . C 3 DTT A 1 1002 1002 DTT DTT . D 3 DTT A 1 1003 1003 DTT DTT . E 4 NA A 1 1004 1004 NA NA . F 5 HOH A 1 1101 1567 HOH HOH . F 5 HOH A 2 1102 1553 HOH HOH . F 5 HOH A 3 1103 1579 HOH HOH . F 5 HOH A 4 1104 1558 HOH HOH . F 5 HOH A 5 1105 1588 HOH HOH . F 5 HOH A 6 1106 1573 HOH HOH . F 5 HOH A 7 1107 1519 HOH HOH . F 5 HOH A 8 1108 1515 HOH HOH . F 5 HOH A 9 1109 1592 HOH HOH . F 5 HOH A 10 1110 1537 HOH HOH . F 5 HOH A 11 1111 1552 HOH HOH . F 5 HOH A 12 1112 1571 HOH HOH . F 5 HOH A 13 1113 1524 HOH HOH . F 5 HOH A 14 1114 1528 HOH HOH . F 5 HOH A 15 1115 1547 HOH HOH . F 5 HOH A 16 1116 1504 HOH HOH . F 5 HOH A 17 1117 1555 HOH HOH . F 5 HOH A 18 1118 1530 HOH HOH . F 5 HOH A 19 1119 1521 HOH HOH . F 5 HOH A 20 1120 1550 HOH HOH . F 5 HOH A 21 1121 1514 HOH HOH . F 5 HOH A 22 1122 1511 HOH HOH . F 5 HOH A 23 1123 1563 HOH HOH . F 5 HOH A 24 1124 1570 HOH HOH . F 5 HOH A 25 1125 1543 HOH HOH . F 5 HOH A 26 1126 1516 HOH HOH . F 5 HOH A 27 1127 1505 HOH HOH . F 5 HOH A 28 1128 1517 HOH HOH . F 5 HOH A 29 1129 1523 HOH HOH . F 5 HOH A 30 1130 1594 HOH HOH . F 5 HOH A 31 1131 1559 HOH HOH . F 5 HOH A 32 1132 1502 HOH HOH . F 5 HOH A 33 1133 1508 HOH HOH . F 5 HOH A 34 1134 1586 HOH HOH . F 5 HOH A 35 1135 1551 HOH HOH . F 5 HOH A 36 1136 1556 HOH HOH . F 5 HOH A 37 1137 1529 HOH HOH . F 5 HOH A 38 1138 1535 HOH HOH . F 5 HOH A 39 1139 1540 HOH HOH . F 5 HOH A 40 1140 1584 HOH HOH . F 5 HOH A 41 1141 1531 HOH HOH . F 5 HOH A 42 1142 1501 HOH HOH . F 5 HOH A 43 1143 1542 HOH HOH . F 5 HOH A 44 1144 1541 HOH HOH . F 5 HOH A 45 1145 1527 HOH HOH . F 5 HOH A 46 1146 1507 HOH HOH . F 5 HOH A 47 1147 1534 HOH HOH . F 5 HOH A 48 1148 1522 HOH HOH . F 5 HOH A 49 1149 1509 HOH HOH . F 5 HOH A 50 1150 1545 HOH HOH . F 5 HOH A 51 1151 1580 HOH HOH . F 5 HOH A 52 1152 1581 HOH HOH . F 5 HOH A 53 1153 1574 HOH HOH . F 5 HOH A 54 1154 1590 HOH HOH . F 5 HOH A 55 1155 1557 HOH HOH . F 5 HOH A 56 1156 1539 HOH HOH . F 5 HOH A 57 1157 1549 HOH HOH . F 5 HOH A 58 1158 1554 HOH HOH . F 5 HOH A 59 1159 1518 HOH HOH . F 5 HOH A 60 1160 1585 HOH HOH . F 5 HOH A 61 1161 1578 HOH HOH . F 5 HOH A 62 1162 1564 HOH HOH . F 5 HOH A 63 1163 1503 HOH HOH . F 5 HOH A 64 1164 1569 HOH HOH . F 5 HOH A 65 1165 1582 HOH HOH . F 5 HOH A 66 1166 1583 HOH HOH . F 5 HOH A 67 1167 1536 HOH HOH . F 5 HOH A 68 1168 1520 HOH HOH . F 5 HOH A 69 1169 1596 HOH HOH . F 5 HOH A 70 1170 1506 HOH HOH . F 5 HOH A 71 1171 1591 HOH HOH . F 5 HOH A 72 1172 1510 HOH HOH . F 5 HOH A 73 1173 1565 HOH HOH . F 5 HOH A 74 1174 1597 HOH HOH . F 5 HOH A 75 1175 1525 HOH HOH . F 5 HOH A 76 1176 1575 HOH HOH . F 5 HOH A 77 1177 1561 HOH HOH . F 5 HOH A 78 1178 1560 HOH HOH . F 5 HOH A 79 1179 1538 HOH HOH . F 5 HOH A 80 1180 1513 HOH HOH . F 5 HOH A 81 1181 1533 HOH HOH . F 5 HOH A 82 1182 1546 HOH HOH . F 5 HOH A 83 1183 1572 HOH HOH . F 5 HOH A 84 1184 1577 HOH HOH . F 5 HOH A 85 1185 1512 HOH HOH . F 5 HOH A 86 1186 1576 HOH HOH . F 5 HOH A 87 1187 1526 HOH HOH . F 5 HOH A 88 1188 1532 HOH HOH . F 5 HOH A 89 1189 1566 HOH HOH . F 5 HOH A 90 1190 1587 HOH HOH . F 5 HOH A 91 1191 1562 HOH HOH . F 5 HOH A 92 1192 1598 HOH HOH . F 5 HOH A 93 1193 1595 HOH HOH . F 5 HOH A 94 1194 1599 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAP 7HF . . . B 2 55.65 25.872 -2.164 1 35.53 ? CAP 7HF 1001 A 1 HETATM 2 C CAK 7HF . . . B 2 55.912 27.113 -1.576 1 37.16 ? CAK 7HF 1001 A 1 HETATM 3 F FBF 7HF . . . B 2 55.253 28.267 -1.966 1 39.35 ? FBF 7HF 1001 A 1 HETATM 4 C CAQ 7HF . . . B 2 56.908 27.212 -0.651 1 39.48 ? CAQ 7HF 1001 A 1 HETATM 5 F FBG 7HF . . . B 2 57.121 28.335 -0.108 1 38.88 ? FBG 7HF 1001 A 1 HETATM 6 C CAD 7HF . . . B 2 57.668 26.087 -0.263 1 35.65 ? CAD 7HF 1001 A 1 HETATM 7 C CAA 7HF . . . B 2 57.396 24.849 -0.845 1 39.44 ? CAA 7HF 1001 A 1 HETATM 8 C CAN 7HF . . . B 2 56.369 24.72 -1.806 1 37 ? CAN 7HF 1001 A 1 HETATM 9 C CBJ 7HF . . . B 2 56.05 23.454 -2.391 1 33.47 ? CBJ 7HF 1001 A 1 HETATM 10 C CAZ 7HF . . . B 2 57.221 22.489 -2.237 1 31.7 ? CAZ 7HF 1001 A 1 HETATM 11 N NAB 7HF . . . B 2 56.912 21.484 -3.283 1 35.2 ? NAB 7HF 1001 A 1 HETATM 12 C CBD 7HF . . . B 2 58.034 20.499 -3.456 1 33.47 ? CBD 7HF 1001 A 1 HETATM 13 C CAW 7HF . . . B 2 57.696 19.436 -4.473 1 31.49 ? CAW 7HF 1001 A 1 HETATM 14 O OAM 7HF . . . B 2 56.733 18.508 -4.005 1 33.63 ? OAM 7HF 1001 A 1 HETATM 15 C CBI 7HF . . . B 2 56.171 17.639 -4.968 1 34.88 ? CBI 7HF 1001 A 1 HETATM 16 C CAR 7HF . . . B 2 56.536 22.263 -4.467 1 33.14 ? CAR 7HF 1001 A 1 HETATM 17 C CBH 7HF . . . B 2 55.875 23.623 -3.921 1 33.07 ? CBH 7HF 1001 A 1 HETATM 18 N NAJ 7HF . . . B 2 54.514 23.637 -4.428 1 27.51 ? NAJ 7HF 1001 A 1 HETATM 19 C CAS 7HF . . . B 2 54.102 24.323 -5.512 1 29.72 ? CAS 7HF 1001 A 1 HETATM 20 O OBA 7HF . . . B 2 54.859 25.161 -6.006 1 30.42 ? OBA 7HF 1001 A 1 HETATM 21 N NAO 7HF . . . B 2 52.824 24.119 -5.913 1 31.37 ? NAO 7HF 1001 A 1 HETATM 22 C CAV 7HF . . . B 2 52.369 24.589 -7.073 1 36.55 ? CAV 7HF 1001 A 1 HETATM 23 C CAG 7HF . . . B 2 51.259 25.239 -7.399 1 34.32 ? CAG 7HF 1001 A 1 HETATM 24 C CBE 7HF . . . B 2 50.235 25.859 -6.475 1 31.17 ? CBE 7HF 1001 A 1 HETATM 25 C CAX 7HF . . . B 2 51.273 25.452 -8.731 1 39.99 ? CAX 7HF 1001 A 1 HETATM 26 O OAI 7HF . . . B 2 50.366 26.14 -9.496 1 36.33 ? OAI 7HF 1001 A 1 HETATM 27 C CAL 7HF . . . B 2 50.811 26.11 -10.896 1 44.18 ? CAL 7HF 1001 A 1 HETATM 28 C CAF 7HF . . . B 2 50.265 27.348 -11.637 1 39.53 ? CAF 7HF 1001 A 1 HETATM 29 N NAT 7HF . . . B 2 52.304 24.814 -9.263 1 32.94 ? NAT 7HF 1001 A 1 HETATM 30 N NAY 7HF . . . B 2 52.983 24.256 -8.277 1 39.01 ? NAY 7HF 1001 A 1 HETATM 31 C CAE 7HF . . . B 2 54.119 23.549 -8.53 1 34.64 ? CAE 7HF 1001 A 1 HETATM 32 C CAU 7HF . . . B 2 54.422 22.338 -7.905 1 32.77 ? CAU 7HF 1001 A 1 HETATM 33 C CAH 7HF . . . B 2 55.57 21.59 -8.135 1 33.53 ? CAH 7HF 1001 A 1 HETATM 34 C CBB 7HF . . . B 2 56.476 22.06 -9.048 1 39.22 ? CBB 7HF 1001 A 1 HETATM 35 C CBC 7HF . . . B 2 56.162 23.226 -9.746 1 36.18 ? CBC 7HF 1001 A 1 HETATM 36 C CAC 7HF . . . B 2 55.008 23.978 -9.495 1 36.76 ? CAC 7HF 1001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 36 #