data_5H3Q # _model_server_result.job_id 9WSN3fF0p5_Jo5W7qptauA _model_server_result.datetime_utc '2024-11-23 02:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 5H3Q # _exptl.entry_id 5H3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H3Q _cell.length_a 140.845 _cell.length_b 157.195 _cell.length_c 52.306 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 107 A CYS 579 1_555 C S1 DTT . A DTT 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? covale ? covale2 A SG CYS 267 A CYS 739 1_555 D S1 DTT . A DTT 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc1 A OG SER 236 A SER 708 1_555 E NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc2 A OD1 ASP 237 A ASP 709 1_555 E NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 E NA NA . A NA 1004 1_555 F O HOH . A HOH 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 153 n n S1 HS1 DTT sing 154 n n C1 C2 DTT sing 155 n n C1 H11 DTT sing 156 n n C1 H12 DTT sing 157 n n C2 O2 DTT sing 158 n n C2 C3 DTT sing 159 n n C2 H2 DTT sing 160 n n O2 HO2 DTT sing 161 n n C3 O3 DTT sing 162 n n C3 C4 DTT sing 163 n n C3 H3 DTT sing 164 n n O3 HO3 DTT sing 165 n n C4 S4 DTT sing 166 n n C4 H41 DTT sing 167 n n C4 H42 DTT sing 168 n n S4 HS2 DTT sing 169 n n # _atom_sites.entry_id 5H3Q _atom_sites.fract_transf_matrix[1][1] 0.0071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7HF A 1 1001 1001 7HF DRG . C 3 DTT A 1 1002 1002 DTT DTT . D 3 DTT A 1 1003 1003 DTT DTT . E 4 NA A 1 1004 1004 NA NA . F 5 HOH A 1 1101 1567 HOH HOH . F 5 HOH A 2 1102 1553 HOH HOH . F 5 HOH A 3 1103 1579 HOH HOH . F 5 HOH A 4 1104 1558 HOH HOH . F 5 HOH A 5 1105 1588 HOH HOH . F 5 HOH A 6 1106 1573 HOH HOH . F 5 HOH A 7 1107 1519 HOH HOH . F 5 HOH A 8 1108 1515 HOH HOH . F 5 HOH A 9 1109 1592 HOH HOH . F 5 HOH A 10 1110 1537 HOH HOH . F 5 HOH A 11 1111 1552 HOH HOH . F 5 HOH A 12 1112 1571 HOH HOH . F 5 HOH A 13 1113 1524 HOH HOH . F 5 HOH A 14 1114 1528 HOH HOH . F 5 HOH A 15 1115 1547 HOH HOH . F 5 HOH A 16 1116 1504 HOH HOH . F 5 HOH A 17 1117 1555 HOH HOH . F 5 HOH A 18 1118 1530 HOH HOH . F 5 HOH A 19 1119 1521 HOH HOH . F 5 HOH A 20 1120 1550 HOH HOH . F 5 HOH A 21 1121 1514 HOH HOH . F 5 HOH A 22 1122 1511 HOH HOH . F 5 HOH A 23 1123 1563 HOH HOH . F 5 HOH A 24 1124 1570 HOH HOH . F 5 HOH A 25 1125 1543 HOH HOH . F 5 HOH A 26 1126 1516 HOH HOH . F 5 HOH A 27 1127 1505 HOH HOH . F 5 HOH A 28 1128 1517 HOH HOH . F 5 HOH A 29 1129 1523 HOH HOH . F 5 HOH A 30 1130 1594 HOH HOH . F 5 HOH A 31 1131 1559 HOH HOH . F 5 HOH A 32 1132 1502 HOH HOH . F 5 HOH A 33 1133 1508 HOH HOH . F 5 HOH A 34 1134 1586 HOH HOH . F 5 HOH A 35 1135 1551 HOH HOH . F 5 HOH A 36 1136 1556 HOH HOH . F 5 HOH A 37 1137 1529 HOH HOH . F 5 HOH A 38 1138 1535 HOH HOH . F 5 HOH A 39 1139 1540 HOH HOH . F 5 HOH A 40 1140 1584 HOH HOH . F 5 HOH A 41 1141 1531 HOH HOH . F 5 HOH A 42 1142 1501 HOH HOH . F 5 HOH A 43 1143 1542 HOH HOH . F 5 HOH A 44 1144 1541 HOH HOH . F 5 HOH A 45 1145 1527 HOH HOH . F 5 HOH A 46 1146 1507 HOH HOH . F 5 HOH A 47 1147 1534 HOH HOH . F 5 HOH A 48 1148 1522 HOH HOH . F 5 HOH A 49 1149 1509 HOH HOH . F 5 HOH A 50 1150 1545 HOH HOH . F 5 HOH A 51 1151 1580 HOH HOH . F 5 HOH A 52 1152 1581 HOH HOH . F 5 HOH A 53 1153 1574 HOH HOH . F 5 HOH A 54 1154 1590 HOH HOH . F 5 HOH A 55 1155 1557 HOH HOH . F 5 HOH A 56 1156 1539 HOH HOH . F 5 HOH A 57 1157 1549 HOH HOH . F 5 HOH A 58 1158 1554 HOH HOH . F 5 HOH A 59 1159 1518 HOH HOH . F 5 HOH A 60 1160 1585 HOH HOH . F 5 HOH A 61 1161 1578 HOH HOH . F 5 HOH A 62 1162 1564 HOH HOH . F 5 HOH A 63 1163 1503 HOH HOH . F 5 HOH A 64 1164 1569 HOH HOH . F 5 HOH A 65 1165 1582 HOH HOH . F 5 HOH A 66 1166 1583 HOH HOH . F 5 HOH A 67 1167 1536 HOH HOH . F 5 HOH A 68 1168 1520 HOH HOH . F 5 HOH A 69 1169 1596 HOH HOH . F 5 HOH A 70 1170 1506 HOH HOH . F 5 HOH A 71 1171 1591 HOH HOH . F 5 HOH A 72 1172 1510 HOH HOH . F 5 HOH A 73 1173 1565 HOH HOH . F 5 HOH A 74 1174 1597 HOH HOH . F 5 HOH A 75 1175 1525 HOH HOH . F 5 HOH A 76 1176 1575 HOH HOH . F 5 HOH A 77 1177 1561 HOH HOH . F 5 HOH A 78 1178 1560 HOH HOH . F 5 HOH A 79 1179 1538 HOH HOH . F 5 HOH A 80 1180 1513 HOH HOH . F 5 HOH A 81 1181 1533 HOH HOH . F 5 HOH A 82 1182 1546 HOH HOH . F 5 HOH A 83 1183 1572 HOH HOH . F 5 HOH A 84 1184 1577 HOH HOH . F 5 HOH A 85 1185 1512 HOH HOH . F 5 HOH A 86 1186 1576 HOH HOH . F 5 HOH A 87 1187 1526 HOH HOH . F 5 HOH A 88 1188 1532 HOH HOH . F 5 HOH A 89 1189 1566 HOH HOH . F 5 HOH A 90 1190 1587 HOH HOH . F 5 HOH A 91 1191 1562 HOH HOH . F 5 HOH A 92 1192 1598 HOH HOH . F 5 HOH A 93 1193 1595 HOH HOH . F 5 HOH A 94 1194 1599 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 3 31.028 31.179 13.992 1 84.05 ? S1 DTT 1003 A 1 HETATM 2 C C1 DTT . . . D 3 29.545 32.098 14.484 1 90.57 ? C1 DTT 1003 A 1 HETATM 3 C C2 DTT . . . D 3 28.642 32.283 13.283 1 82.15 ? C2 DTT 1003 A 1 HETATM 4 O O2 DTT . . . D 3 27.389 31.786 13.723 1 86.39 ? O2 DTT 1003 A 1 HETATM 5 C C3 DTT . . . D 3 29.125 31.448 12.102 1 76.98 ? C3 DTT 1003 A 1 HETATM 6 O O3 DTT . . . D 3 29.186 30.096 12.562 1 78.69 ? O3 DTT 1003 A 1 HETATM 7 C C4 DTT . . . D 3 28.189 31.391 10.925 1 72.63 ? C4 DTT 1003 A 1 HETATM 8 S S4 DTT . . . D 3 27.362 29.805 10.994 1 73.58 ? S4 DTT 1003 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #