data_5H3Q
#
_model_server_result.job_id            YWjwTnWCosDcSKkfPethng 
_model_server_result.datetime_utc      '2024-11-23 02:47:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1004}' 
#
_entry.id    5H3Q 
#
_exptl.entry_id    5H3Q 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5H3Q 
_cell.length_a            140.845 
_cell.length_b            157.195 
_cell.length_c            52.306 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H3Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        21 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 107 A CYS 579 1_555 C S1 DTT . A DTT 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
covale ? covale2 A SG CYS 267 A CYS 739 1_555 D S1 DTT . A DTT 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc1 A OG SER 236 A SER 708 1_555 E NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc2 A OD1 ASP 237 A ASP 709 1_555 E NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc3 E NA NA . A NA 1004 1_555 F O HOH . A HOH 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5H3Q 
_atom_sites.fract_transf_matrix[1][1]    0.0071 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006362 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019118 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 7HF A 1 1001 1001 7HF DRG . 
C 3 DTT A 1 1002 1002 DTT DTT . 
D 3 DTT A 1 1003 1003 DTT DTT . 
E 4 NA A 1 1004 1004 NA NA . 
F 5 HOH A 1 1101 1567 HOH HOH . 
F 5 HOH A 2 1102 1553 HOH HOH . 
F 5 HOH A 3 1103 1579 HOH HOH . 
F 5 HOH A 4 1104 1558 HOH HOH . 
F 5 HOH A 5 1105 1588 HOH HOH . 
F 5 HOH A 6 1106 1573 HOH HOH . 
F 5 HOH A 7 1107 1519 HOH HOH . 
F 5 HOH A 8 1108 1515 HOH HOH . 
F 5 HOH A 9 1109 1592 HOH HOH . 
F 5 HOH A 10 1110 1537 HOH HOH . 
F 5 HOH A 11 1111 1552 HOH HOH . 
F 5 HOH A 12 1112 1571 HOH HOH . 
F 5 HOH A 13 1113 1524 HOH HOH . 
F 5 HOH A 14 1114 1528 HOH HOH . 
F 5 HOH A 15 1115 1547 HOH HOH . 
F 5 HOH A 16 1116 1504 HOH HOH . 
F 5 HOH A 17 1117 1555 HOH HOH . 
F 5 HOH A 18 1118 1530 HOH HOH . 
F 5 HOH A 19 1119 1521 HOH HOH . 
F 5 HOH A 20 1120 1550 HOH HOH . 
F 5 HOH A 21 1121 1514 HOH HOH . 
F 5 HOH A 22 1122 1511 HOH HOH . 
F 5 HOH A 23 1123 1563 HOH HOH . 
F 5 HOH A 24 1124 1570 HOH HOH . 
F 5 HOH A 25 1125 1543 HOH HOH . 
F 5 HOH A 26 1126 1516 HOH HOH . 
F 5 HOH A 27 1127 1505 HOH HOH . 
F 5 HOH A 28 1128 1517 HOH HOH . 
F 5 HOH A 29 1129 1523 HOH HOH . 
F 5 HOH A 30 1130 1594 HOH HOH . 
F 5 HOH A 31 1131 1559 HOH HOH . 
F 5 HOH A 32 1132 1502 HOH HOH . 
F 5 HOH A 33 1133 1508 HOH HOH . 
F 5 HOH A 34 1134 1586 HOH HOH . 
F 5 HOH A 35 1135 1551 HOH HOH . 
F 5 HOH A 36 1136 1556 HOH HOH . 
F 5 HOH A 37 1137 1529 HOH HOH . 
F 5 HOH A 38 1138 1535 HOH HOH . 
F 5 HOH A 39 1139 1540 HOH HOH . 
F 5 HOH A 40 1140 1584 HOH HOH . 
F 5 HOH A 41 1141 1531 HOH HOH . 
F 5 HOH A 42 1142 1501 HOH HOH . 
F 5 HOH A 43 1143 1542 HOH HOH . 
F 5 HOH A 44 1144 1541 HOH HOH . 
F 5 HOH A 45 1145 1527 HOH HOH . 
F 5 HOH A 46 1146 1507 HOH HOH . 
F 5 HOH A 47 1147 1534 HOH HOH . 
F 5 HOH A 48 1148 1522 HOH HOH . 
F 5 HOH A 49 1149 1509 HOH HOH . 
F 5 HOH A 50 1150 1545 HOH HOH . 
F 5 HOH A 51 1151 1580 HOH HOH . 
F 5 HOH A 52 1152 1581 HOH HOH . 
F 5 HOH A 53 1153 1574 HOH HOH . 
F 5 HOH A 54 1154 1590 HOH HOH . 
F 5 HOH A 55 1155 1557 HOH HOH . 
F 5 HOH A 56 1156 1539 HOH HOH . 
F 5 HOH A 57 1157 1549 HOH HOH . 
F 5 HOH A 58 1158 1554 HOH HOH . 
F 5 HOH A 59 1159 1518 HOH HOH . 
F 5 HOH A 60 1160 1585 HOH HOH . 
F 5 HOH A 61 1161 1578 HOH HOH . 
F 5 HOH A 62 1162 1564 HOH HOH . 
F 5 HOH A 63 1163 1503 HOH HOH . 
F 5 HOH A 64 1164 1569 HOH HOH . 
F 5 HOH A 65 1165 1582 HOH HOH . 
F 5 HOH A 66 1166 1583 HOH HOH . 
F 5 HOH A 67 1167 1536 HOH HOH . 
F 5 HOH A 68 1168 1520 HOH HOH . 
F 5 HOH A 69 1169 1596 HOH HOH . 
F 5 HOH A 70 1170 1506 HOH HOH . 
F 5 HOH A 71 1171 1591 HOH HOH . 
F 5 HOH A 72 1172 1510 HOH HOH . 
F 5 HOH A 73 1173 1565 HOH HOH . 
F 5 HOH A 74 1174 1597 HOH HOH . 
F 5 HOH A 75 1175 1525 HOH HOH . 
F 5 HOH A 76 1176 1575 HOH HOH . 
F 5 HOH A 77 1177 1561 HOH HOH . 
F 5 HOH A 78 1178 1560 HOH HOH . 
F 5 HOH A 79 1179 1538 HOH HOH . 
F 5 HOH A 80 1180 1513 HOH HOH . 
F 5 HOH A 81 1181 1533 HOH HOH . 
F 5 HOH A 82 1182 1546 HOH HOH . 
F 5 HOH A 83 1183 1572 HOH HOH . 
F 5 HOH A 84 1184 1577 HOH HOH . 
F 5 HOH A 85 1185 1512 HOH HOH . 
F 5 HOH A 86 1186 1576 HOH HOH . 
F 5 HOH A 87 1187 1526 HOH HOH . 
F 5 HOH A 88 1188 1532 HOH HOH . 
F 5 HOH A 89 1189 1566 HOH HOH . 
F 5 HOH A 90 1190 1587 HOH HOH . 
F 5 HOH A 91 1191 1562 HOH HOH . 
F 5 HOH A 92 1192 1598 HOH HOH . 
F 5 HOH A 93 1193 1595 HOH HOH . 
F 5 HOH A 94 1194 1599 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               50.336 
_atom_site.Cartn_y               31.931 
_atom_site.Cartn_z               4.841 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        47.23 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1004 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#