data_5H3T # _model_server_result.job_id yDNBR5MuI5CySAzEXM1r1A _model_server_result.datetime_utc '2024-10-19 08:21:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 5H3T # _exptl.entry_id 5H3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.223 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.59 _cell.angle_gamma 90 _cell.entry_id 5H3T _cell.length_a 113.159 _cell.length_b 91.007 _cell.length_c 153.717 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,K 1 1 B,G,H,L 2 1 C,I,M 3 1 D,J,N 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C11 H20 N5 O14 P3' _chem_comp.formula_weight 539.223 _chem_comp.id MGT _chem_comp.mon_nstd_flag n _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MGT doub 250 n n PG O2G MGT sing 251 n n PG O3G MGT sing 252 n n PG O3B MGT sing 253 n n O2G HOG2 MGT sing 254 n n O3G HOG3 MGT sing 255 n n O3B PB MGT sing 256 n n PB O1B MGT doub 257 n n PB O2B MGT sing 258 n n PB O3A MGT sing 259 n n O2B HOB2 MGT sing 260 n n O3A PA MGT sing 261 n n PA O1A MGT doub 262 n n PA O2A MGT sing 263 n n PA O5' MGT sing 264 n n O2A HOA2 MGT sing 265 n n O5' C5' MGT sing 266 n n C5' C4' MGT sing 267 n n C5' "H5'1" MGT sing 268 n n C5' "H5'2" MGT sing 269 n n C4' O4' MGT sing 270 n n C4' C3' MGT sing 271 n n C4' H4' MGT sing 272 n n O4' C1' MGT sing 273 n n C3' O3' MGT sing 274 n n C3' C2' MGT sing 275 n n C3' H3' MGT sing 276 n n O3' HO3' MGT sing 277 n n C2' O2' MGT sing 278 n n C2' C1' MGT sing 279 n n C2' H2' MGT sing 280 n n O2' HO2' MGT sing 281 n n C1' N9 MGT sing 282 n n C1' H1' MGT sing 283 n n N9 C8 MGT sing 284 n n N9 C4 MGT sing 285 n n C8 N7 MGT sing 286 n n C8 H81 MGT sing 287 n n C8 H82 MGT sing 288 n n N7 CM7 MGT sing 289 n n N7 C5 MGT sing 290 n n CM7 HM71 MGT sing 291 n n CM7 HM72 MGT sing 292 n n CM7 HM73 MGT sing 293 n n C5 C6 MGT sing 294 n n C5 C4 MGT doub 295 n n C6 O6 MGT doub 296 n n C6 N1 MGT sing 297 n n N1 C2 MGT sing 298 n n N1 HN1 MGT sing 299 n n C2 N2 MGT sing 300 n n C2 N3 MGT doub 301 n n N2 HN21 MGT sing 302 n n N2 HN22 MGT sing 303 n n N3 C4 MGT sing 304 n n # _atom_sites.entry_id 5H3T _atom_sites.fract_transf_matrix[1][1] 0.008837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001653 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MGT A 1 801 1 MGT MGT . F 3 GOL A 1 802 2 GOL GOL . G 2 MGT B 1 801 2 MGT MGT . H 3 GOL B 1 802 1 GOL GOL . I 2 MGT C 1 801 3 MGT MGT . J 2 MGT D 1 801 4 MGT MGT . K 4 HOH A 1 901 24 HOH HOH . K 4 HOH A 2 902 110 HOH HOH . K 4 HOH A 3 903 1 HOH HOH . K 4 HOH A 4 904 15 HOH HOH . K 4 HOH A 5 905 76 HOH HOH . K 4 HOH A 6 906 73 HOH HOH . K 4 HOH A 7 907 121 HOH HOH . K 4 HOH A 8 908 112 HOH HOH . K 4 HOH A 9 909 125 HOH HOH . L 4 HOH B 1 901 26 HOH HOH . L 4 HOH B 2 902 90 HOH HOH . L 4 HOH B 3 903 33 HOH HOH . L 4 HOH B 4 904 83 HOH HOH . L 4 HOH B 5 905 32 HOH HOH . L 4 HOH B 6 906 85 HOH HOH . L 4 HOH B 7 907 5 HOH HOH . L 4 HOH B 8 908 113 HOH HOH . L 4 HOH B 9 909 9 HOH HOH . L 4 HOH B 10 910 120 HOH HOH . L 4 HOH B 11 911 11 HOH HOH . L 4 HOH B 12 912 66 HOH HOH . L 4 HOH B 13 913 17 HOH HOH . L 4 HOH B 14 914 105 HOH HOH . L 4 HOH B 15 915 45 HOH HOH . L 4 HOH B 16 916 86 HOH HOH . L 4 HOH B 17 917 57 HOH HOH . L 4 HOH B 18 918 13 HOH HOH . L 4 HOH B 19 919 49 HOH HOH . L 4 HOH B 20 920 114 HOH HOH . L 4 HOH B 21 921 58 HOH HOH . L 4 HOH B 22 922 55 HOH HOH . L 4 HOH B 23 923 56 HOH HOH . L 4 HOH B 24 924 115 HOH HOH . L 4 HOH B 25 925 117 HOH HOH . L 4 HOH B 26 926 37 HOH HOH . M 4 HOH C 1 901 74 HOH HOH . M 4 HOH C 2 902 31 HOH HOH . M 4 HOH C 3 903 20 HOH HOH . M 4 HOH C 4 904 99 HOH HOH . M 4 HOH C 5 905 10 HOH HOH . M 4 HOH C 6 906 65 HOH HOH . M 4 HOH C 7 907 94 HOH HOH . M 4 HOH C 8 908 19 HOH HOH . M 4 HOH C 9 909 92 HOH HOH . M 4 HOH C 10 910 41 HOH HOH . M 4 HOH C 11 911 36 HOH HOH . M 4 HOH C 12 912 87 HOH HOH . M 4 HOH C 13 913 69 HOH HOH . M 4 HOH C 14 914 23 HOH HOH . M 4 HOH C 15 915 111 HOH HOH . M 4 HOH C 16 916 29 HOH HOH . M 4 HOH C 17 917 72 HOH HOH . M 4 HOH C 18 918 51 HOH HOH . M 4 HOH C 19 919 82 HOH HOH . M 4 HOH C 20 920 42 HOH HOH . M 4 HOH C 21 921 48 HOH HOH . M 4 HOH C 22 922 39 HOH HOH . M 4 HOH C 23 923 30 HOH HOH . M 4 HOH C 24 924 21 HOH HOH . M 4 HOH C 25 925 22 HOH HOH . M 4 HOH C 26 926 80 HOH HOH . M 4 HOH C 27 927 7 HOH HOH . M 4 HOH C 28 928 40 HOH HOH . M 4 HOH C 29 929 54 HOH HOH . M 4 HOH C 30 930 46 HOH HOH . M 4 HOH C 31 931 12 HOH HOH . M 4 HOH C 32 932 77 HOH HOH . M 4 HOH C 33 933 100 HOH HOH . M 4 HOH C 34 934 62 HOH HOH . M 4 HOH C 35 935 79 HOH HOH . M 4 HOH C 36 936 59 HOH HOH . M 4 HOH C 37 937 52 HOH HOH . M 4 HOH C 38 938 53 HOH HOH . M 4 HOH C 39 939 107 HOH HOH . M 4 HOH C 40 940 44 HOH HOH . M 4 HOH C 41 941 60 HOH HOH . M 4 HOH C 42 942 43 HOH HOH . M 4 HOH C 43 943 103 HOH HOH . M 4 HOH C 44 944 75 HOH HOH . M 4 HOH C 45 945 119 HOH HOH . M 4 HOH C 46 946 63 HOH HOH . M 4 HOH C 47 947 18 HOH HOH . M 4 HOH C 48 948 109 HOH HOH . M 4 HOH C 49 949 34 HOH HOH . M 4 HOH C 50 950 118 HOH HOH . M 4 HOH C 51 951 61 HOH HOH . M 4 HOH C 52 952 89 HOH HOH . M 4 HOH C 53 953 96 HOH HOH . M 4 HOH C 54 954 104 HOH HOH . N 4 HOH D 1 901 47 HOH HOH . N 4 HOH D 2 902 27 HOH HOH . N 4 HOH D 3 903 116 HOH HOH . N 4 HOH D 4 904 50 HOH HOH . N 4 HOH D 5 905 38 HOH HOH . N 4 HOH D 6 906 106 HOH HOH . N 4 HOH D 7 907 3 HOH HOH . N 4 HOH D 8 908 68 HOH HOH . N 4 HOH D 9 909 35 HOH HOH . N 4 HOH D 10 910 64 HOH HOH . N 4 HOH D 11 911 8 HOH HOH . N 4 HOH D 12 912 14 HOH HOH . N 4 HOH D 13 913 67 HOH HOH . N 4 HOH D 14 914 4 HOH HOH . N 4 HOH D 15 915 81 HOH HOH . N 4 HOH D 16 916 71 HOH HOH . N 4 HOH D 17 917 78 HOH HOH . N 4 HOH D 18 918 98 HOH HOH . N 4 HOH D 19 919 93 HOH HOH . N 4 HOH D 20 920 70 HOH HOH . N 4 HOH D 21 921 6 HOH HOH . N 4 HOH D 22 922 2 HOH HOH . N 4 HOH D 23 923 123 HOH HOH . N 4 HOH D 24 924 16 HOH HOH . N 4 HOH D 25 925 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MGT . . . E 2 15.594 -18.734 187.813 1 115.72 ? PG MGT 801 A 1 HETATM 2 O O1G MGT . . . E 2 15.57 -19.644 189.016 1 120.2 ? O1G MGT 801 A 1 HETATM 3 O O2G MGT . . . E 2 14.874 -17.423 188.01 1 119.32 ? O2G MGT 801 A 1 HETATM 4 O O3G MGT . . . E 2 15.294 -19.421 186.503 1 116.77 ? O3G MGT 801 A 1 HETATM 5 O O3B MGT . . . E 2 17.14 -18.311 187.683 1 111.23 ? O3B MGT 801 A 1 HETATM 6 P PB MGT . . . E 2 18.28 -19.222 188.359 1 111.67 ? PB MGT 801 A 1 HETATM 7 O O1B MGT . . . E 2 18.176 -19.068 189.856 1 108.45 ? O1B MGT 801 A 1 HETATM 8 O O2B MGT . . . E 2 18.213 -20.596 187.738 1 119.56 ? O2B MGT 801 A 1 HETATM 9 O O3A MGT . . . E 2 19.638 -18.514 187.866 1 108.89 ? O3A MGT 801 A 1 HETATM 10 P PA MGT . . . E 2 19.845 -18.131 186.316 1 98.63 ? PA MGT 801 A 1 HETATM 11 O O1A MGT . . . E 2 21.159 -18.713 185.854 1 98.61 ? O1A MGT 801 A 1 HETATM 12 O O2A MGT . . . E 2 18.574 -18.462 185.575 1 102.86 ? O2A MGT 801 A 1 HETATM 13 O O5' MGT . . . E 2 19.995 -16.531 186.37 1 95.04 ? O5' MGT 801 A 1 HETATM 14 C C5' MGT . . . E 2 19.286 -15.708 185.447 1 87.1 ? C5' MGT 801 A 1 HETATM 15 C C4' MGT . . . E 2 19.281 -14.267 185.941 1 83.26 ? C4' MGT 801 A 1 HETATM 16 O O4' MGT . . . E 2 18.971 -14.227 187.335 1 81.69 ? O4' MGT 801 A 1 HETATM 17 C C3' MGT . . . E 2 20.64 -13.61 185.755 1 78.65 ? C3' MGT 801 A 1 HETATM 18 O O3' MGT . . . E 2 20.609 -12.719 184.631 1 79.75 ? O3' MGT 801 A 1 HETATM 19 C C2' MGT . . . E 2 20.948 -12.919 187.079 1 81.05 ? C2' MGT 801 A 1 HETATM 20 O O2' MGT . . . E 2 20.845 -11.49 187.014 1 94.73 ? O2' MGT 801 A 1 HETATM 21 C C1' MGT . . . E 2 19.922 -13.445 188.071 1 77.57 ? C1' MGT 801 A 1 HETATM 22 N N9 MGT . . . E 2 20.635 -14.209 189.139 1 74.75 ? N9 MGT 801 A 1 HETATM 23 C C8 MGT . . . E 2 20.174 -15.591 189.319 1 72.2 ? C8 MGT 801 A 1 HETATM 24 N N7 MGT . . . E 2 21.096 -15.926 190.397 1 71.31 ? N7 MGT 801 A 1 HETATM 25 C CM7 MGT . . . E 2 20.939 -17.318 190.886 1 57.09 ? CM7 MGT 801 A 1 HETATM 26 C C5 MGT . . . E 2 21.924 -14.956 190.776 1 71.43 ? C5 MGT 801 A 1 HETATM 27 C C6 MGT . . . E 2 22.982 -14.882 191.801 1 68.05 ? C6 MGT 801 A 1 HETATM 28 O O6 MGT . . . E 2 23.266 -15.852 192.534 1 62.35 ? O6 MGT 801 A 1 HETATM 29 N N1 MGT . . . E 2 23.62 -13.707 191.894 1 70.02 ? N1 MGT 801 A 1 HETATM 30 C C2 MGT . . . E 2 23.322 -12.649 191.105 1 62.94 ? C2 MGT 801 A 1 HETATM 31 N N2 MGT . . . E 2 24.027 -11.506 191.281 1 49.26 ? N2 MGT 801 A 1 HETATM 32 N N3 MGT . . . E 2 22.355 -12.664 190.145 1 63.22 ? N3 MGT 801 A 1 HETATM 33 C C4 MGT . . . E 2 21.627 -13.784 189.935 1 69.46 ? C4 MGT 801 A 1 # _model_server_stats.io_time_ms 157 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 33 #