data_5H3T
#
_model_server_result.job_id            ceBXypDXiikTcWfLR1GIEQ 
_model_server_result.datetime_utc      '2024-10-19 08:38:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h3t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":801}' 
#
_entry.id    5H3T 
#
_exptl.entry_id    5H3T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.223 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.59 
_cell.angle_gamma         90 
_cell.entry_id            5H3T 
_cell.length_a            113.159 
_cell.length_b            91.007 
_cell.length_c            153.717 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H3T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,K 1 1 
B,G,H,L 2 1 
C,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C11 H20 N5 O14 P3' 
_chem_comp.formula_weight    539.223 
_chem_comp.id                MGT 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G MGT doub 250 n n 
PG O2G MGT sing 251 n n 
PG O3G MGT sing 252 n n 
PG O3B MGT sing 253 n n 
O2G HOG2 MGT sing 254 n n 
O3G HOG3 MGT sing 255 n n 
O3B PB MGT sing 256 n n 
PB O1B MGT doub 257 n n 
PB O2B MGT sing 258 n n 
PB O3A MGT sing 259 n n 
O2B HOB2 MGT sing 260 n n 
O3A PA MGT sing 261 n n 
PA O1A MGT doub 262 n n 
PA O2A MGT sing 263 n n 
PA O5' MGT sing 264 n n 
O2A HOA2 MGT sing 265 n n 
O5' C5' MGT sing 266 n n 
C5' C4' MGT sing 267 n n 
C5' "H5'1" MGT sing 268 n n 
C5' "H5'2" MGT sing 269 n n 
C4' O4' MGT sing 270 n n 
C4' C3' MGT sing 271 n n 
C4' H4' MGT sing 272 n n 
O4' C1' MGT sing 273 n n 
C3' O3' MGT sing 274 n n 
C3' C2' MGT sing 275 n n 
C3' H3' MGT sing 276 n n 
O3' HO3' MGT sing 277 n n 
C2' O2' MGT sing 278 n n 
C2' C1' MGT sing 279 n n 
C2' H2' MGT sing 280 n n 
O2' HO2' MGT sing 281 n n 
C1' N9 MGT sing 282 n n 
C1' H1' MGT sing 283 n n 
N9 C8 MGT sing 284 n n 
N9 C4 MGT sing 285 n n 
C8 N7 MGT sing 286 n n 
C8 H81 MGT sing 287 n n 
C8 H82 MGT sing 288 n n 
N7 CM7 MGT sing 289 n n 
N7 C5 MGT sing 290 n n 
CM7 HM71 MGT sing 291 n n 
CM7 HM72 MGT sing 292 n n 
CM7 HM73 MGT sing 293 n n 
C5 C6 MGT sing 294 n n 
C5 C4 MGT doub 295 n n 
C6 O6 MGT doub 296 n n 
C6 N1 MGT sing 297 n n 
N1 C2 MGT sing 298 n n 
N1 HN1 MGT sing 299 n n 
C2 N2 MGT sing 300 n n 
C2 N3 MGT doub 301 n n 
N2 HN21 MGT sing 302 n n 
N2 HN22 MGT sing 303 n n 
N3 C4 MGT sing 304 n n 
#
_atom_sites.entry_id                     5H3T 
_atom_sites.fract_transf_matrix[1][1]    0.008837 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001653 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010988 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MGT A 1 801 1 MGT MGT . 
F 3 GOL A 1 802 2 GOL GOL . 
G 2 MGT B 1 801 2 MGT MGT . 
H 3 GOL B 1 802 1 GOL GOL . 
I 2 MGT C 1 801 3 MGT MGT . 
J 2 MGT D 1 801 4 MGT MGT . 
K 4 HOH A 1 901 24 HOH HOH . 
K 4 HOH A 2 902 110 HOH HOH . 
K 4 HOH A 3 903 1 HOH HOH . 
K 4 HOH A 4 904 15 HOH HOH . 
K 4 HOH A 5 905 76 HOH HOH . 
K 4 HOH A 6 906 73 HOH HOH . 
K 4 HOH A 7 907 121 HOH HOH . 
K 4 HOH A 8 908 112 HOH HOH . 
K 4 HOH A 9 909 125 HOH HOH . 
L 4 HOH B 1 901 26 HOH HOH . 
L 4 HOH B 2 902 90 HOH HOH . 
L 4 HOH B 3 903 33 HOH HOH . 
L 4 HOH B 4 904 83 HOH HOH . 
L 4 HOH B 5 905 32 HOH HOH . 
L 4 HOH B 6 906 85 HOH HOH . 
L 4 HOH B 7 907 5 HOH HOH . 
L 4 HOH B 8 908 113 HOH HOH . 
L 4 HOH B 9 909 9 HOH HOH . 
L 4 HOH B 10 910 120 HOH HOH . 
L 4 HOH B 11 911 11 HOH HOH . 
L 4 HOH B 12 912 66 HOH HOH . 
L 4 HOH B 13 913 17 HOH HOH . 
L 4 HOH B 14 914 105 HOH HOH . 
L 4 HOH B 15 915 45 HOH HOH . 
L 4 HOH B 16 916 86 HOH HOH . 
L 4 HOH B 17 917 57 HOH HOH . 
L 4 HOH B 18 918 13 HOH HOH . 
L 4 HOH B 19 919 49 HOH HOH . 
L 4 HOH B 20 920 114 HOH HOH . 
L 4 HOH B 21 921 58 HOH HOH . 
L 4 HOH B 22 922 55 HOH HOH . 
L 4 HOH B 23 923 56 HOH HOH . 
L 4 HOH B 24 924 115 HOH HOH . 
L 4 HOH B 25 925 117 HOH HOH . 
L 4 HOH B 26 926 37 HOH HOH . 
M 4 HOH C 1 901 74 HOH HOH . 
M 4 HOH C 2 902 31 HOH HOH . 
M 4 HOH C 3 903 20 HOH HOH . 
M 4 HOH C 4 904 99 HOH HOH . 
M 4 HOH C 5 905 10 HOH HOH . 
M 4 HOH C 6 906 65 HOH HOH . 
M 4 HOH C 7 907 94 HOH HOH . 
M 4 HOH C 8 908 19 HOH HOH . 
M 4 HOH C 9 909 92 HOH HOH . 
M 4 HOH C 10 910 41 HOH HOH . 
M 4 HOH C 11 911 36 HOH HOH . 
M 4 HOH C 12 912 87 HOH HOH . 
M 4 HOH C 13 913 69 HOH HOH . 
M 4 HOH C 14 914 23 HOH HOH . 
M 4 HOH C 15 915 111 HOH HOH . 
M 4 HOH C 16 916 29 HOH HOH . 
M 4 HOH C 17 917 72 HOH HOH . 
M 4 HOH C 18 918 51 HOH HOH . 
M 4 HOH C 19 919 82 HOH HOH . 
M 4 HOH C 20 920 42 HOH HOH . 
M 4 HOH C 21 921 48 HOH HOH . 
M 4 HOH C 22 922 39 HOH HOH . 
M 4 HOH C 23 923 30 HOH HOH . 
M 4 HOH C 24 924 21 HOH HOH . 
M 4 HOH C 25 925 22 HOH HOH . 
M 4 HOH C 26 926 80 HOH HOH . 
M 4 HOH C 27 927 7 HOH HOH . 
M 4 HOH C 28 928 40 HOH HOH . 
M 4 HOH C 29 929 54 HOH HOH . 
M 4 HOH C 30 930 46 HOH HOH . 
M 4 HOH C 31 931 12 HOH HOH . 
M 4 HOH C 32 932 77 HOH HOH . 
M 4 HOH C 33 933 100 HOH HOH . 
M 4 HOH C 34 934 62 HOH HOH . 
M 4 HOH C 35 935 79 HOH HOH . 
M 4 HOH C 36 936 59 HOH HOH . 
M 4 HOH C 37 937 52 HOH HOH . 
M 4 HOH C 38 938 53 HOH HOH . 
M 4 HOH C 39 939 107 HOH HOH . 
M 4 HOH C 40 940 44 HOH HOH . 
M 4 HOH C 41 941 60 HOH HOH . 
M 4 HOH C 42 942 43 HOH HOH . 
M 4 HOH C 43 943 103 HOH HOH . 
M 4 HOH C 44 944 75 HOH HOH . 
M 4 HOH C 45 945 119 HOH HOH . 
M 4 HOH C 46 946 63 HOH HOH . 
M 4 HOH C 47 947 18 HOH HOH . 
M 4 HOH C 48 948 109 HOH HOH . 
M 4 HOH C 49 949 34 HOH HOH . 
M 4 HOH C 50 950 118 HOH HOH . 
M 4 HOH C 51 951 61 HOH HOH . 
M 4 HOH C 52 952 89 HOH HOH . 
M 4 HOH C 53 953 96 HOH HOH . 
M 4 HOH C 54 954 104 HOH HOH . 
N 4 HOH D 1 901 47 HOH HOH . 
N 4 HOH D 2 902 27 HOH HOH . 
N 4 HOH D 3 903 116 HOH HOH . 
N 4 HOH D 4 904 50 HOH HOH . 
N 4 HOH D 5 905 38 HOH HOH . 
N 4 HOH D 6 906 106 HOH HOH . 
N 4 HOH D 7 907 3 HOH HOH . 
N 4 HOH D 8 908 68 HOH HOH . 
N 4 HOH D 9 909 35 HOH HOH . 
N 4 HOH D 10 910 64 HOH HOH . 
N 4 HOH D 11 911 8 HOH HOH . 
N 4 HOH D 12 912 14 HOH HOH . 
N 4 HOH D 13 913 67 HOH HOH . 
N 4 HOH D 14 914 4 HOH HOH . 
N 4 HOH D 15 915 81 HOH HOH . 
N 4 HOH D 16 916 71 HOH HOH . 
N 4 HOH D 17 917 78 HOH HOH . 
N 4 HOH D 18 918 98 HOH HOH . 
N 4 HOH D 19 919 93 HOH HOH . 
N 4 HOH D 20 920 70 HOH HOH . 
N 4 HOH D 21 921 6 HOH HOH . 
N 4 HOH D 22 922 2 HOH HOH . 
N 4 HOH D 23 923 123 HOH HOH . 
N 4 HOH D 24 924 16 HOH HOH . 
N 4 HOH D 25 925 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG MGT . . . G 2 26.275 26.515 193.736 1 98.59 ? PG MGT 801 B 1 
HETATM 2 O O1G MGT . . . G 2 25.933 25.228 193.026 1 101.71 ? O1G MGT 801 B 1 
HETATM 3 O O2G MGT . . . G 2 27.142 27.454 192.934 1 99.79 ? O2G MGT 801 B 1 
HETATM 4 O O3G MGT . . . G 2 26.701 26.342 195.173 1 101.76 ? O3G MGT 801 B 1 
HETATM 5 O O3B MGT . . . G 2 24.864 27.281 193.839 1 92.05 ? O3B MGT 801 B 1 
HETATM 6 P PB MGT . . . G 2 23.565 26.666 193.117 1 89.3 ? PB MGT 801 B 1 
HETATM 7 O O1B MGT . . . G 2 23.71 26.88 191.631 1 93.08 ? O1B MGT 801 B 1 
HETATM 8 O O2B MGT . . . G 2 23.339 25.277 193.659 1 94.88 ? O2B MGT 801 B 1 
HETATM 9 O O3A MGT . . . G 2 22.377 27.611 193.648 1 76.68 ? O3A MGT 801 B 1 
HETATM 10 P PA MGT . . . G 2 21.843 27.485 195.159 1 64.73 ? PA MGT 801 B 1 
HETATM 11 O O1A MGT . . . G 2 20.424 26.973 195.124 1 69.64 ? O1A MGT 801 B 1 
HETATM 12 O O2A MGT . . . G 2 22.883 26.757 195.972 1 68.01 ? O2A MGT 801 B 1 
HETATM 13 O O5' MGT . . . G 2 21.815 29.021 195.635 1 65.79 ? O5' MGT 801 B 1 
HETATM 14 C C5' MGT . . . G 2 23.029 29.76 195.727 1 52.94 ? C5' MGT 801 B 1 
HETATM 15 C C4' MGT . . . G 2 22.802 31.196 195.271 1 61.98 ? C4' MGT 801 B 1 
HETATM 16 O O4' MGT . . . G 2 22.946 31.286 193.852 1 62.65 ? O4' MGT 801 B 1 
HETATM 17 C C3' MGT . . . G 2 21.405 31.689 195.613 1 70.08 ? C3' MGT 801 B 1 
HETATM 18 O O3' MGT . . . G 2 21.435 32.489 196.803 1 76.74 ? O3' MGT 801 B 1 
HETATM 19 C C2' MGT . . . G 2 20.928 32.445 194.379 1 68.87 ? C2' MGT 801 B 1 
HETATM 20 O O2' MGT . . . G 2 20.923 33.868 194.548 1 79.81 ? O2' MGT 801 B 1 
HETATM 21 C C1' MGT . . . G 2 21.905 32.083 193.27 1 62.81 ? C1' MGT 801 B 1 
HETATM 22 N N9 MGT . . . G 2 21.158 31.396 192.175 1 60.76 ? N9 MGT 801 B 1 
HETATM 23 C C8 MGT . . . G 2 21.608 30.03 191.883 1 58.79 ? C8 MGT 801 B 1 
HETATM 24 N N7 MGT . . . G 2 20.651 29.775 190.814 1 55.75 ? N7 MGT 801 B 1 
HETATM 25 C CM7 MGT . . . G 2 20.788 28.421 190.223 1 41.94 ? CM7 MGT 801 B 1 
HETATM 26 C C5 MGT . . . G 2 19.815 30.772 190.531 1 57.97 ? C5 MGT 801 B 1 
HETATM 27 C C6 MGT . . . G 2 18.725 30.926 189.549 1 60.6 ? C6 MGT 801 B 1 
HETATM 28 O O6 MGT . . . G 2 18.413 30.013 188.756 1 59.86 ? O6 MGT 801 B 1 
HETATM 29 N N1 MGT . . . G 2 18.092 32.106 189.562 1 59.37 ? N1 MGT 801 B 1 
HETATM 30 C C2 MGT . . . G 2 18.42 33.103 190.416 1 55.97 ? C2 MGT 801 B 1 
HETATM 31 N N2 MGT . . . G 2 17.718 34.259 190.348 1 51.97 ? N2 MGT 801 B 1 
HETATM 32 N N3 MGT . . . G 2 19.417 33.013 191.341 1 50.77 ? N3 MGT 801 B 1 
HETATM 33 C C4 MGT . . . G 2 20.144 31.879 191.444 1 54.94 ? C4 MGT 801 B 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#