data_5H3U # _model_server_result.job_id UaaIC-YksfR_VkDMUOtYeA _model_server_result.datetime_utc '2024-11-20 07:22:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 5H3U # _exptl.entry_id 5H3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.99 _cell.angle_gamma 90 _cell.entry_id 5H3U _cell.length_a 76.836 _cell.length_b 92.083 _cell.length_c 110.801 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 244 n n C1 C2 GOL sing 245 n n C1 H11 GOL sing 246 n n C1 H12 GOL sing 247 n n O1 HO1 GOL sing 248 n n C2 O2 GOL sing 249 n n C2 C3 GOL sing 250 n n C2 H2 GOL sing 251 n n O2 HO2 GOL sing 252 n n C3 O3 GOL sing 253 n n C3 H31 GOL sing 254 n n C3 H32 GOL sing 255 n n O3 HO3 GOL sing 256 n n # _atom_sites.entry_id 5H3U _atom_sites.fract_transf_matrix[1][1] 0.013015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002293 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 801 1 GOL GOL . E 4 HOH A 1 901 121 HOH HOH . E 4 HOH A 2 902 112 HOH HOH . E 4 HOH A 3 903 45 HOH HOH . E 4 HOH A 4 904 146 HOH HOH . E 4 HOH A 5 905 43 HOH HOH . E 4 HOH A 6 906 119 HOH HOH . E 4 HOH A 7 907 15 HOH HOH . E 4 HOH A 8 908 3 HOH HOH . E 4 HOH A 9 909 53 HOH HOH . E 4 HOH A 10 910 79 HOH HOH . E 4 HOH A 11 911 41 HOH HOH . E 4 HOH A 12 912 18 HOH HOH . E 4 HOH A 13 913 7 HOH HOH . E 4 HOH A 14 914 77 HOH HOH . E 4 HOH A 15 915 70 HOH HOH . E 4 HOH A 16 916 2 HOH HOH . E 4 HOH A 17 917 58 HOH HOH . E 4 HOH A 18 918 39 HOH HOH . E 4 HOH A 19 919 16 HOH HOH . E 4 HOH A 20 920 34 HOH HOH . E 4 HOH A 21 921 21 HOH HOH . E 4 HOH A 22 922 73 HOH HOH . E 4 HOH A 23 923 147 HOH HOH . E 4 HOH A 24 924 84 HOH HOH . E 4 HOH A 25 925 106 HOH HOH . E 4 HOH A 26 926 140 HOH HOH . E 4 HOH A 27 927 108 HOH HOH . E 4 HOH A 28 928 60 HOH HOH . E 4 HOH A 29 929 99 HOH HOH . E 4 HOH A 30 930 30 HOH HOH . E 4 HOH A 31 931 117 HOH HOH . E 4 HOH A 32 932 105 HOH HOH . E 4 HOH A 33 933 56 HOH HOH . E 4 HOH A 34 934 42 HOH HOH . E 4 HOH A 35 935 66 HOH HOH . E 4 HOH A 36 936 4 HOH HOH . E 4 HOH A 37 937 94 HOH HOH . E 4 HOH A 38 938 138 HOH HOH . E 4 HOH A 39 939 32 HOH HOH . E 4 HOH A 40 940 23 HOH HOH . E 4 HOH A 41 941 63 HOH HOH . E 4 HOH A 42 942 13 HOH HOH . E 4 HOH A 43 943 19 HOH HOH . E 4 HOH A 44 944 91 HOH HOH . E 4 HOH A 45 945 17 HOH HOH . E 4 HOH A 46 946 11 HOH HOH . E 4 HOH A 47 947 35 HOH HOH . E 4 HOH A 48 948 51 HOH HOH . E 4 HOH A 49 949 40 HOH HOH . E 4 HOH A 50 950 50 HOH HOH . E 4 HOH A 51 951 68 HOH HOH . E 4 HOH A 52 952 100 HOH HOH . E 4 HOH A 53 953 44 HOH HOH . E 4 HOH A 54 954 152 HOH HOH . E 4 HOH A 55 955 101 HOH HOH . E 4 HOH A 56 956 8 HOH HOH . E 4 HOH A 57 957 57 HOH HOH . E 4 HOH A 58 958 67 HOH HOH . E 4 HOH A 59 959 148 HOH HOH . E 4 HOH A 60 960 81 HOH HOH . E 4 HOH A 61 961 28 HOH HOH . E 4 HOH A 62 962 89 HOH HOH . E 4 HOH A 63 963 78 HOH HOH . E 4 HOH A 64 964 110 HOH HOH . E 4 HOH A 65 965 132 HOH HOH . E 4 HOH A 66 966 90 HOH HOH . E 4 HOH A 67 967 52 HOH HOH . E 4 HOH A 68 968 31 HOH HOH . E 4 HOH A 69 969 143 HOH HOH . E 4 HOH A 70 970 54 HOH HOH . E 4 HOH A 71 971 87 HOH HOH . E 4 HOH A 72 972 65 HOH HOH . E 4 HOH A 73 973 38 HOH HOH . E 4 HOH A 74 974 122 HOH HOH . E 4 HOH A 75 975 88 HOH HOH . E 4 HOH A 76 976 83 HOH HOH . E 4 HOH A 77 977 133 HOH HOH . E 4 HOH A 78 978 125 HOH HOH . E 4 HOH A 79 979 76 HOH HOH . E 4 HOH A 80 980 145 HOH HOH . E 4 HOH A 81 981 92 HOH HOH . E 4 HOH A 82 982 93 HOH HOH . E 4 HOH A 83 983 14 HOH HOH . E 4 HOH A 84 984 107 HOH HOH . F 4 HOH B 1 801 5 HOH HOH . F 4 HOH B 2 802 111 HOH HOH . F 4 HOH B 3 803 61 HOH HOH . F 4 HOH B 4 804 62 HOH HOH . F 4 HOH B 5 805 25 HOH HOH . F 4 HOH B 6 806 131 HOH HOH . F 4 HOH B 7 807 102 HOH HOH . F 4 HOH B 8 808 80 HOH HOH . F 4 HOH B 9 809 74 HOH HOH . F 4 HOH B 10 810 33 HOH HOH . F 4 HOH B 11 811 135 HOH HOH . F 4 HOH B 12 812 55 HOH HOH . F 4 HOH B 13 813 134 HOH HOH . F 4 HOH B 14 814 46 HOH HOH . F 4 HOH B 15 815 22 HOH HOH . F 4 HOH B 16 816 98 HOH HOH . F 4 HOH B 17 817 86 HOH HOH . F 4 HOH B 18 818 149 HOH HOH . F 4 HOH B 19 819 27 HOH HOH . F 4 HOH B 20 820 150 HOH HOH . F 4 HOH B 21 821 48 HOH HOH . F 4 HOH B 22 822 72 HOH HOH . F 4 HOH B 23 823 64 HOH HOH . G 4 HOH C 1 101 20 HOH HOH . G 4 HOH C 2 102 59 HOH HOH . G 4 HOH C 3 103 47 HOH HOH . G 4 HOH C 4 104 118 HOH HOH . G 4 HOH C 5 105 136 HOH HOH . G 4 HOH C 6 106 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -71.792 7.312 22.262 1 37.35 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . D 3 -72.443 6.068 22.433 1 21.2 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . D 3 -71.069 7.915 23.508 1 35.53 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . D 3 -69.732 7.613 23.429 1 41.18 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . D 3 -71.165 9.451 23.621 1 32.67 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . D 3 -72.463 9.965 23.951 1 22.16 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 151 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 6 #