data_5H4D # _model_server_result.job_id TIBAdUUXj8LEpA3zlM7-MA _model_server_result.datetime_utc '2024-11-24 01:14:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":101}' # _entry.id 5H4D # _exptl.entry_id 5H4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.184 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-AMINO-4-METHYL-CHROMEN-2-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H4D _cell.length_a 114.56 _cell.length_b 114.56 _cell.length_c 123.404 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,P 1 1 B,C,I,J,K,L,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 3 D LYS 3 1_555 B N ALY 4 D ALY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? covale ? covale2 B C ALY 4 D ALY 4 1_555 I N MCM . D MCM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 D C LYS 3 C LYS 3 1_555 D N ALY 4 C ALY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.264 ? covale ? covale4 D C ALY 4 C ALY 4 1_555 P N MCM . C MCM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? metalc ? metalc1 A SG CYS 136 A CYS 256 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A SG CYS 160 A CYS 280 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 A SG CYS 163 A CYS 283 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 C SG CYS 136 H CYS 256 1_555 K ZN ZN . H ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc5 C SG CYS 139 H CYS 259 1_555 K ZN ZN . H ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 C SG CYS 160 H CYS 280 1_555 K ZN ZN . H ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc7 C SG CYS 163 H CYS 283 1_555 K ZN ZN . H ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? # _chem_comp.formula 'C10 H9 N O2' _chem_comp.formula_weight 175.184 _chem_comp.id MCM _chem_comp.mon_nstd_flag . _chem_comp.name 7-AMINO-4-METHYL-CHROMEN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-AMINO-4-METHYLCOUMARIN # _atom_sites.entry_id 5H4D _atom_sites.fract_transf_matrix[1][1] 0.008729 _atom_sites.fract_transf_matrix[1][2] 0.00504 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 401 401 ZN ZN . F 4 MG A 1 402 405 MG MG . G 5 BBI A 1 403 1 BBI LIG . H 6 NAD A 1 404 702 NAD NAD . I 7 MCM D 1 101 4 MCM FDL . J 8 PEG H 1 401 403 PEG PEG . K 3 ZN H 1 402 401 ZN ZN . L 8 PEG H 1 403 404 PEG PEG . M 4 MG H 1 404 405 MG MG . N 5 BBI H 1 405 2 BBI LIG . O 6 NAD H 1 406 703 NAD NAD . P 7 MCM C 1 101 4 MCM FDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MCM . . . I 7 17.253 29.828 30.18 1 23.54 ? N MCM 101 D 1 HETATM 2 C CA MCM . . . I 7 17.945 29.937 31.31 1 23.45 ? CA MCM 101 D 1 HETATM 3 C C2 MCM . . . I 7 17.617 30.909 32.254 1 23.11 ? C2 MCM 101 D 1 HETATM 4 C C3 MCM . . . I 7 18.352 30.981 33.442 1 22.65 ? C3 MCM 101 D 1 HETATM 5 C C4 MCM . . . I 7 18.811 32.08 35.477 1 21.85 ? C4 MCM 101 D 1 HETATM 6 C C5 MCM . . . I 7 19.847 31.194 35.763 1 21.63 ? C5 MCM 101 D 1 HETATM 7 C C6 MCM . . . I 7 20.14 30.162 34.886 1 21.51 ? C6 MCM 101 D 1 HETATM 8 C C7 MCM . . . I 7 19.398 30.08 33.719 1 22.27 ? C7 MCM 101 D 1 HETATM 9 C C8 MCM . . . I 7 19.716 29.118 32.767 1 22.9 ? C8 MCM 101 D 1 HETATM 10 C C9 MCM . . . I 7 18.995 29.053 31.587 1 23.25 ? C9 MCM 101 D 1 HETATM 11 C C10 MCM . . . I 7 21.177 29.265 35.153 1 21.26 ? C10 MCM 101 D 1 HETATM 12 O O1 MCM . . . I 7 18.048 31.948 34.353 1 22.18 ? O1 MCM 101 D 1 HETATM 13 O O2 MCM . . . I 7 18.595 32.973 36.289 1 21.75 ? O2 MCM 101 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #