data_5H4D # _model_server_result.job_id Ny6SZh749dDCzq9rev1hXA _model_server_result.datetime_utc '2024-11-24 00:29:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":405}' # _entry.id 5H4D # _exptl.entry_id 5H4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 645.312 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2-butyl-1-benzofuran-3-yl){4-[2-(diethylamino)ethoxy]-3,5-diiodophenyl}methanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H4D _cell.length_a 114.56 _cell.length_b 114.56 _cell.length_c 123.404 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,P 1 1 B,C,I,J,K,L,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 3 D LYS 3 1_555 B N ALY 4 D ALY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? covale ? covale2 B C ALY 4 D ALY 4 1_555 I N MCM . D MCM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 D C LYS 3 C LYS 3 1_555 D N ALY 4 C ALY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.264 ? covale ? covale4 D C ALY 4 C ALY 4 1_555 P N MCM . C MCM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? metalc ? metalc1 A SG CYS 136 A CYS 256 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A SG CYS 160 A CYS 280 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 A SG CYS 163 A CYS 283 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 C SG CYS 136 H CYS 256 1_555 K ZN ZN . H ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc5 C SG CYS 139 H CYS 259 1_555 K ZN ZN . H ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 C SG CYS 160 H CYS 280 1_555 K ZN ZN . H ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc7 C SG CYS 163 H CYS 283 1_555 K ZN ZN . H ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? # _chem_comp.formula 'C25 H29 I2 N O3' _chem_comp.formula_weight 645.312 _chem_comp.id BBI _chem_comp.mon_nstd_flag . _chem_comp.name (2-butyl-1-benzofuran-3-yl){4-[2-(diethylamino)ethoxy]-3,5-diiodophenyl}methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5H4D _atom_sites.fract_transf_matrix[1][1] 0.008729 _atom_sites.fract_transf_matrix[1][2] 0.00504 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 401 401 ZN ZN . F 4 MG A 1 402 405 MG MG . G 5 BBI A 1 403 1 BBI LIG . H 6 NAD A 1 404 702 NAD NAD . I 7 MCM D 1 101 4 MCM FDL . J 8 PEG H 1 401 403 PEG PEG . K 3 ZN H 1 402 401 ZN ZN . L 8 PEG H 1 403 404 PEG PEG . M 4 MG H 1 404 405 MG MG . N 5 BBI H 1 405 2 BBI LIG . O 6 NAD H 1 406 703 NAD NAD . P 7 MCM C 1 101 4 MCM FDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA BBI . . . N 5 8.193 32.254 45.011 1 90.62 ? CAA BBI 405 H 1 HETATM 2 C CAB BBI . . . N 5 9.21 32.414 43.877 1 92.53 ? CAB BBI 405 H 1 HETATM 3 C CAC BBI . . . N 5 10.279 33.438 44.279 1 96.94 ? CAC BBI 405 H 1 HETATM 4 C CAD BBI . . . N 5 10.36 34.61 43.28 1 102.66 ? CAD BBI 405 H 1 HETATM 5 C CAE BBI . . . N 5 11.827 34.832 42.868 1 109.71 ? CAE BBI 405 H 1 HETATM 6 O OAF BBI . . . N 5 12.63 35.649 43.479 1 108.03 ? OAF BBI 405 H 1 HETATM 7 C CAG BBI . . . N 5 13.839 35.577 42.849 1 108.7 ? CAG BBI 405 H 1 HETATM 8 C CAH BBI . . . N 5 14.974 36.221 43.104 1 108.01 ? CAH BBI 405 H 1 HETATM 9 C CAI BBI . . . N 5 16.097 35.998 42.329 1 106.02 ? CAI BBI 405 H 1 HETATM 10 C CAJ BBI . . . N 5 16.024 35.094 41.282 1 105.12 ? CAJ BBI 405 H 1 HETATM 11 C CAK BBI . . . N 5 14.815 34.449 41.062 1 106.84 ? CAK BBI 405 H 1 HETATM 12 C CAL BBI . . . N 5 13.746 34.695 41.842 1 111 ? CAL BBI 405 H 1 HETATM 13 C CAM BBI . . . N 5 12.482 34.241 41.867 1 118.49 ? CAM BBI 405 H 1 HETATM 14 C CAN BBI . . . N 5 11.934 33.338 41.044 1 132.8 ? CAN BBI 405 H 1 HETATM 15 O OAO BBI . . . N 5 11.234 32.413 41.464 1 133.45 ? OAO BBI 405 H 1 HETATM 16 C CAP BBI . . . N 5 12.234 33.453 39.689 1 145.25 ? CAP BBI 405 H 1 HETATM 17 C CBE BBI . . . N 5 13.1 32.51 39.148 1 148.97 ? CBE BBI 405 H 1 HETATM 18 C CBC BBI . . . N 5 13.457 32.566 37.813 1 150.59 ? CBC BBI 405 H 1 HETATM 19 I IBD BBI . . . N 5 14.757 31.143 37.065 1 171.37 ? IBD BBI 405 H 1 HETATM 20 C CAQ BBI . . . N 5 11.707 34.467 38.88 1 153.8 ? CAQ BBI 405 H 1 HETATM 21 C CAR BBI . . . N 5 12.057 34.527 37.525 1 155.78 ? CAR BBI 405 H 1 HETATM 22 I IAS BBI . . . N 5 11.294 36.027 36.276 1 189.29 ? IAS BBI 405 H 1 HETATM 23 C CAT BBI . . . N 5 12.929 33.569 37.014 1 146.16 ? CAT BBI 405 H 1 HETATM 24 O OAU BBI . . . N 5 13.268 33.598 35.692 1 122.24 ? OAU BBI 405 H 1 HETATM 25 C CAV BBI . . . N 5 12.208 33.09 34.88 1 108.37 ? CAV BBI 405 H 1 HETATM 26 C CAW BBI . . . N 5 12.409 31.588 34.781 1 99.88 ? CAW BBI 405 H 1 HETATM 27 N NAX BBI . . . N 5 11.237 30.932 34.221 1 90.84 ? NAX BBI 405 H 1 HETATM 28 C CBA BBI . . . N 5 11.631 29.635 33.803 1 84.17 ? CBA BBI 405 H 1 HETATM 29 C CBB BBI . . . N 5 10.416 28.789 33.497 1 81.13 ? CBB BBI 405 H 1 HETATM 30 C CAY BBI . . . N 5 10.216 30.917 35.31 1 91.02 ? CAY BBI 405 H 1 HETATM 31 C CAZ BBI . . . N 5 10.256 29.659 36.224 1 91.99 ? CAZ BBI 405 H 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #