data_5H4J
#
_model_server_result.job_id            c7Eh2dSDK3GkvB9ZSWI5gA 
_model_server_result.datetime_utc      '2025-09-06 23:42:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h4j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5H4J 
#
_exptl.entry_id    5H4J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              451.536 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(1R)-1-[3-(Cyclopentyloxy)-phenyl]-ethyl]-3-[(3,4-dihydro-2,4-dioxo-1(2H)-pyrimidinyl)methoxy]-1-propanesulfonamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5H4J 
_cell.length_a            89.645 
_cell.length_b            89.645 
_cell.length_c            89.645 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 33 A GLU 33 1_555 C ZN ZN . A ZN 202 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc2 A NE2 HIS 34 A HIS 34 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc3 C ZN ZN . A ZN 202 1_555 D N1 IMD . A IMD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
#
_chem_comp.formula           'C21 H29 N3 O6 S' 
_chem_comp.formula_weight    451.536 
_chem_comp.id                FKM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(1R)-1-[3-(Cyclopentyloxy)-phenyl]-ethyl]-3-[(3,4-dihydro-2,4-dioxo-1(2H)-pyrimidinyl)methoxy]-1-propanesulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O7 C1 FKM doub 92 n n 
C24 C25 FKM doub 93 n y 
C24 C23 FKM sing 94 n y 
C1 C6 FKM sing 95 n n 
C1 N2 FKM sing 96 n n 
C25 C20 FKM sing 97 n y 
C23 C22 FKM doub 98 n y 
C6 C5 FKM doub 99 n n 
N2 C3 FKM sing 100 n n 
C20 C18 FKM sing 101 n n 
C20 C21 FKM doub 102 n y 
C22 C21 FKM sing 103 n y 
C22 O26 FKM sing 104 n n 
C19 C18 FKM sing 105 n n 
C18 N17 FKM sing 106 n n 
O26 C27 FKM sing 107 n n 
C5 N4 FKM sing 108 n n 
C3 O8 FKM doub 109 n n 
C3 N4 FKM sing 110 n n 
C27 C31 FKM sing 111 n n 
C27 C28 FKM sing 112 n n 
C31 C30 FKM sing 113 n n 
N4 C9 FKM sing 114 n n 
O15 S14 FKM doub 115 n n 
N17 S14 FKM sing 116 n n 
S14 C13 FKM sing 117 n n 
S14 O16 FKM doub 118 n n 
C13 C12 FKM sing 119 n n 
C28 C29 FKM sing 120 n n 
C30 C29 FKM sing 121 n n 
C9 O10 FKM sing 122 n n 
C11 O10 FKM sing 123 n n 
C11 C12 FKM sing 124 n n 
C13 H1 FKM sing 125 n n 
C13 H2 FKM sing 126 n n 
C12 H3 FKM sing 127 n n 
C12 H4 FKM sing 128 n n 
C11 H5 FKM sing 129 n n 
C11 H6 FKM sing 130 n n 
C9 H7 FKM sing 131 n n 
C9 H8 FKM sing 132 n n 
N2 H9 FKM sing 133 n n 
C5 H10 FKM sing 134 n n 
C6 H11 FKM sing 135 n n 
N17 H12 FKM sing 136 n n 
C18 H13 FKM sing 137 n n 
C19 H14 FKM sing 138 n n 
C19 H15 FKM sing 139 n n 
C19 H16 FKM sing 140 n n 
C25 H17 FKM sing 141 n n 
C24 H18 FKM sing 142 n n 
C23 H19 FKM sing 143 n n 
C21 H20 FKM sing 144 n n 
C27 H21 FKM sing 145 n n 
C31 H22 FKM sing 146 n n 
C31 H23 FKM sing 147 n n 
C30 H24 FKM sing 148 n n 
C30 H25 FKM sing 149 n n 
C29 H26 FKM sing 150 n n 
C29 H27 FKM sing 151 n n 
C28 H28 FKM sing 152 n n 
C28 H29 FKM sing 153 n n 
#
_atom_sites.entry_id                     5H4J 
_atom_sites.fract_transf_matrix[1][1]    0.011155 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011155 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011155 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FKM A 1 201 1 FKM fko . 
C 3 ZN A 1 202 1 ZN ZN . 
D 4 IMD A 1 203 1 IMD IMD . 
E 5 DMS A 1 204 1 DMS DMS . 
F 6 HOH A 1 301 48 HOH HOH . 
F 6 HOH A 2 302 72 HOH HOH . 
F 6 HOH A 3 303 91 HOH HOH . 
F 6 HOH A 4 304 96 HOH HOH . 
F 6 HOH A 5 305 16 HOH HOH . 
F 6 HOH A 6 306 26 HOH HOH . 
F 6 HOH A 7 307 84 HOH HOH . 
F 6 HOH A 8 308 129 HOH HOH . 
F 6 HOH A 9 309 65 HOH HOH . 
F 6 HOH A 10 310 15 HOH HOH . 
F 6 HOH A 11 311 95 HOH HOH . 
F 6 HOH A 12 312 29 HOH HOH . 
F 6 HOH A 13 313 128 HOH HOH . 
F 6 HOH A 14 314 126 HOH HOH . 
F 6 HOH A 15 315 113 HOH HOH . 
F 6 HOH A 16 316 90 HOH HOH . 
F 6 HOH A 17 317 47 HOH HOH . 
F 6 HOH A 18 318 67 HOH HOH . 
F 6 HOH A 19 319 54 HOH HOH . 
F 6 HOH A 20 320 6 HOH HOH . 
F 6 HOH A 21 321 19 HOH HOH . 
F 6 HOH A 22 322 5 HOH HOH . 
F 6 HOH A 23 323 77 HOH HOH . 
F 6 HOH A 24 324 106 HOH HOH . 
F 6 HOH A 25 325 1 HOH HOH . 
F 6 HOH A 26 326 10 HOH HOH . 
F 6 HOH A 27 327 32 HOH HOH . 
F 6 HOH A 28 328 73 HOH HOH . 
F 6 HOH A 29 329 3 HOH HOH . 
F 6 HOH A 30 330 37 HOH HOH . 
F 6 HOH A 31 331 13 HOH HOH . 
F 6 HOH A 32 332 58 HOH HOH . 
F 6 HOH A 33 333 20 HOH HOH . 
F 6 HOH A 34 334 14 HOH HOH . 
F 6 HOH A 35 335 38 HOH HOH . 
F 6 HOH A 36 336 27 HOH HOH . 
F 6 HOH A 37 337 93 HOH HOH . 
F 6 HOH A 38 338 40 HOH HOH . 
F 6 HOH A 39 339 34 HOH HOH . 
F 6 HOH A 40 340 8 HOH HOH . 
F 6 HOH A 41 341 60 HOH HOH . 
F 6 HOH A 42 342 49 HOH HOH . 
F 6 HOH A 43 343 43 HOH HOH . 
F 6 HOH A 44 344 50 HOH HOH . 
F 6 HOH A 45 345 122 HOH HOH . 
F 6 HOH A 46 346 46 HOH HOH . 
F 6 HOH A 47 347 89 HOH HOH . 
F 6 HOH A 48 348 59 HOH HOH . 
F 6 HOH A 49 349 56 HOH HOH . 
F 6 HOH A 50 350 22 HOH HOH . 
F 6 HOH A 51 351 63 HOH HOH . 
F 6 HOH A 52 352 85 HOH HOH . 
F 6 HOH A 53 353 127 HOH HOH . 
F 6 HOH A 54 354 4 HOH HOH . 
F 6 HOH A 55 355 24 HOH HOH . 
F 6 HOH A 56 356 109 HOH HOH . 
F 6 HOH A 57 357 30 HOH HOH . 
F 6 HOH A 58 358 82 HOH HOH . 
F 6 HOH A 59 359 23 HOH HOH . 
F 6 HOH A 60 360 108 HOH HOH . 
F 6 HOH A 61 361 130 HOH HOH . 
F 6 HOH A 62 362 123 HOH HOH . 
F 6 HOH A 63 363 66 HOH HOH . 
F 6 HOH A 64 364 86 HOH HOH . 
F 6 HOH A 65 365 112 HOH HOH . 
F 6 HOH A 66 366 17 HOH HOH . 
F 6 HOH A 67 367 18 HOH HOH . 
F 6 HOH A 68 368 70 HOH HOH . 
F 6 HOH A 69 369 12 HOH HOH . 
F 6 HOH A 70 370 41 HOH HOH . 
F 6 HOH A 71 371 9 HOH HOH . 
F 6 HOH A 72 372 44 HOH HOH . 
F 6 HOH A 73 373 92 HOH HOH . 
F 6 HOH A 74 374 116 HOH HOH . 
F 6 HOH A 75 375 134 HOH HOH . 
F 6 HOH A 76 376 33 HOH HOH . 
F 6 HOH A 77 377 52 HOH HOH . 
F 6 HOH A 78 378 55 HOH HOH . 
F 6 HOH A 79 379 36 HOH HOH . 
F 6 HOH A 80 380 7 HOH HOH . 
F 6 HOH A 81 381 114 HOH HOH . 
F 6 HOH A 82 382 51 HOH HOH . 
F 6 HOH A 83 383 2 HOH HOH . 
F 6 HOH A 84 384 25 HOH HOH . 
F 6 HOH A 85 385 124 HOH HOH . 
F 6 HOH A 86 386 94 HOH HOH . 
F 6 HOH A 87 387 133 HOH HOH . 
F 6 HOH A 88 388 117 HOH HOH . 
F 6 HOH A 89 389 64 HOH HOH . 
F 6 HOH A 90 390 87 HOH HOH . 
F 6 HOH A 91 391 115 HOH HOH . 
F 6 HOH A 92 392 80 HOH HOH . 
F 6 HOH A 93 393 101 HOH HOH . 
F 6 HOH A 94 394 131 HOH HOH . 
F 6 HOH A 95 395 76 HOH HOH . 
F 6 HOH A 96 396 11 HOH HOH . 
F 6 HOH A 97 397 68 HOH HOH . 
F 6 HOH A 98 398 35 HOH HOH . 
F 6 HOH A 99 399 21 HOH HOH . 
F 6 HOH A 100 400 107 HOH HOH . 
F 6 HOH A 101 401 98 HOH HOH . 
F 6 HOH A 102 402 83 HOH HOH . 
F 6 HOH A 103 403 74 HOH HOH . 
F 6 HOH A 104 404 111 HOH HOH . 
F 6 HOH A 105 405 31 HOH HOH . 
F 6 HOH A 106 406 110 HOH HOH . 
F 6 HOH A 107 407 45 HOH HOH . 
F 6 HOH A 108 408 61 HOH HOH . 
F 6 HOH A 109 409 138 HOH HOH . 
F 6 HOH A 110 410 136 HOH HOH . 
F 6 HOH A 111 411 100 HOH HOH . 
F 6 HOH A 112 412 118 HOH HOH . 
F 6 HOH A 113 413 139 HOH HOH . 
F 6 HOH A 114 414 97 HOH HOH . 
F 6 HOH A 115 415 137 HOH HOH . 
F 6 HOH A 116 416 140 HOH HOH . 
F 6 HOH A 117 417 42 HOH HOH . 
F 6 HOH A 118 418 79 HOH HOH . 
F 6 HOH A 119 419 125 HOH HOH . 
F 6 HOH A 120 420 28 HOH HOH . 
F 6 HOH A 121 421 75 HOH HOH . 
F 6 HOH A 122 422 103 HOH HOH . 
F 6 HOH A 123 423 53 HOH HOH . 
F 6 HOH A 124 424 78 HOH HOH . 
F 6 HOH A 125 425 119 HOH HOH . 
F 6 HOH A 126 426 99 HOH HOH . 
F 6 HOH A 127 427 71 HOH HOH . 
F 6 HOH A 128 428 102 HOH HOH . 
F 6 HOH A 129 429 69 HOH HOH . 
F 6 HOH A 130 430 104 HOH HOH . 
F 6 HOH A 131 431 120 HOH HOH . 
F 6 HOH A 132 432 121 HOH HOH . 
F 6 HOH A 133 433 81 HOH HOH . 
F 6 HOH A 134 434 62 HOH HOH . 
F 6 HOH A 135 435 135 HOH HOH . 
F 6 HOH A 136 436 39 HOH HOH . 
F 6 HOH A 137 437 57 HOH HOH . 
F 6 HOH A 138 438 132 HOH HOH . 
F 6 HOH A 139 439 88 HOH HOH . 
F 6 HOH A 140 440 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O16 FKM . . . B 2 4.607 3.92 27.036 1 24.39 ? O16 FKM 201 A 1 
HETATM 2 S S14 FKM . . . B 2 4.994 3.841 25.659 1 22.84 ? S14 FKM 201 A 1 
HETATM 3 O O15 FKM . . . B 2 4.316 4.728 24.746 1 23.69 ? O15 FKM 201 A 1 
HETATM 4 C C13 FKM . . . B 2 6.656 4.288 25.711 1 22.23 ? C13 FKM 201 A 1 
HETATM 5 C C12 FKM . . . B 2 7.522 3.295 26.563 1 20.47 ? C12 FKM 201 A 1 
HETATM 6 C C11 FKM . . . B 2 9.011 3.491 26.262 1 21.11 ? C11 FKM 201 A 1 
HETATM 7 O O10 FKM . . . B 2 9.42 4.849 26.5 1 18.2 ? O10 FKM 201 A 1 
HETATM 8 C C9 FKM . . . B 2 10.746 5.11 26.18 1 18.49 ? C9 FKM 201 A 1 
HETATM 9 N N4 FKM . . . B 2 10.846 5.191 24.7 1 18.85 ? N4 FKM 201 A 1 
HETATM 10 C C3 FKM . . . B 2 11.574 4.195 24.032 1 18.4 ? C3 FKM 201 A 1 
HETATM 11 O O8 FKM . . . B 2 12.134 3.271 24.679 1 17.62 ? O8 FKM 201 A 1 
HETATM 12 N N2 FKM . . . B 2 11.716 4.258 22.705 1 16.3 ? N2 FKM 201 A 1 
HETATM 13 C C5 FKM . . . B 2 10.292 6.206 23.985 1 18.2 ? C5 FKM 201 A 1 
HETATM 14 C C6 FKM . . . B 2 10.414 6.264 22.602 1 18.54 ? C6 FKM 201 A 1 
HETATM 15 C C1 FKM . . . B 2 11.126 5.24 21.96 1 17.6 ? C1 FKM 201 A 1 
HETATM 16 O O7 FKM . . . B 2 11.213 5.211 20.757 1 16.85 ? O7 FKM 201 A 1 
HETATM 17 N N17 FKM . . . B 2 4.828 2.377 25.096 1 21.59 ? N17 FKM 201 A 1 
HETATM 18 C C18 FKM . . . B 2 4.887 1.995 23.677 1 22.28 ? C18 FKM 201 A 1 
HETATM 19 C C19 FKM . . . B 2 4.178 0.676 23.431 1 23.67 ? C19 FKM 201 A 1 
HETATM 20 C C20 FKM . . . B 2 6.305 1.986 23.202 1 18.6 ? C20 FKM 201 A 1 
HETATM 21 C C25 FKM . . . B 2 6.769 2.959 22.301 1 18.97 ? C25 FKM 201 A 1 
HETATM 22 C C24 FKM . . . B 2 8.091 2.944 21.905 1 16.79 ? C24 FKM 201 A 1 
HETATM 23 C C23 FKM . . . B 2 9.047 2.057 22.409 1 16.92 ? C23 FKM 201 A 1 
HETATM 24 C C22 FKM . . . B 2 8.595 1.061 23.292 1 19.08 ? C22 FKM 201 A 1 
HETATM 25 C C21 FKM . . . B 2 7.249 1.04 23.69 1 18.91 ? C21 FKM 201 A 1 
HETATM 26 O O26 FKM . . . B 2 9.525 0.168 23.76 1 20.42 ? O26 FKM 201 A 1 
HETATM 27 C C27 FKM . . . B 2 9.123 -0.881 24.641 1 25.05 ? C27 FKM 201 A 1 
HETATM 28 C C31 FKM . . . B 2 10.241 -1.917 24.658 1 25.32 ? C31 FKM 201 A 1 
HETATM 29 C C30 FKM . . . B 2 10.366 -2.394 26.094 1 30.7 ? C30 FKM 201 A 1 
HETATM 30 C C29 FKM . . . B 2 9.775 -1.326 27.016 1 28.34 ? C29 FKM 201 A 1 
HETATM 31 C C28 FKM . . . B 2 9.054 -0.37 26.078 1 23.61 ? C28 FKM 201 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           376 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#