data_5H53
#
_model_server_result.job_id            lEar6Gxzq1QOa2-N7ewGjg 
_model_server_result.datetime_utc      '2024-11-28 12:10:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h53 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    5H53 
#
_exptl.entry_id    5H53 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale2 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 E C GLU 72 E GLU 72 1_555 E N HIC 73 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale4 E C HIC 73 E HIC 73 1_555 E N GLY 74 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5H53 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 ADP D 1 401 376 ADP ADP . 
G 5 ADP E 1 401 376 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 5 164.73 153.824 208.711 1 0 ? PB ADP 401 E 1 
HETATM 2 O O1B ADP . . . G 5 163.798 153.823 207.546 1 0 ? O1B ADP 401 E 1 
HETATM 3 O O2B ADP . . . G 5 164.21 152.876 209.71 1 0 ? O2B ADP 401 E 1 
HETATM 4 O O3B ADP . . . G 5 165.134 155.219 209.246 1 0 ? O3B ADP 401 E 1 
HETATM 5 P PA ADP . . . G 5 166.715 151.72 208.204 1 0 ? PA ADP 401 E 1 
HETATM 6 O O1A ADP . . . G 5 165.738 150.793 207.56 1 0 ? O1A ADP 401 E 1 
HETATM 7 O O2A ADP . . . G 5 167.229 151.274 209.507 1 0 ? O2A ADP 401 E 1 
HETATM 8 O O3A ADP . . . G 5 166.103 153.177 208.244 1 0 ? O3A ADP 401 E 1 
HETATM 9 O O5' ADP . . . G 5 168.02 151.878 207.29 1 0 ? O5' ADP 401 E 1 
HETATM 10 C C5' ADP . . . G 5 167.822 152.272 205.889 1 0 ? C5' ADP 401 E 1 
HETATM 11 C C4' ADP . . . G 5 169.09 153.025 205.484 1 0 ? C4' ADP 401 E 1 
HETATM 12 O O4' ADP . . . G 5 170.217 152.125 205.679 1 0 ? O4' ADP 401 E 1 
HETATM 13 C C3' ADP . . . G 5 169.07 153.427 203.981 1 0 ? C3' ADP 401 E 1 
HETATM 14 O O3' ADP . . . G 5 169.687 154.736 203.904 1 0 ? O3' ADP 401 E 1 
HETATM 15 C C2' ADP . . . G 5 170.03 152.394 203.366 1 0 ? C2' ADP 401 E 1 
HETATM 16 O O2' ADP . . . G 5 170.693 152.868 202.18 1 0 ? O2' ADP 401 E 1 
HETATM 17 C C1' ADP . . . G 5 170.951 152.055 204.503 1 0 ? C1' ADP 401 E 1 
HETATM 18 N N9 ADP . . . G 5 171.645 150.784 204.387 1 0 ? N9 ADP 401 E 1 
HETATM 19 C C8 ADP . . . G 5 171.116 149.541 204.22 1 0 ? C8 ADP 401 E 1 
HETATM 20 N N7 ADP . . . G 5 171.974 148.563 204.097 1 0 ? N7 ADP 401 E 1 
HETATM 21 C C5 ADP . . . G 5 173.135 149.199 204.223 1 0 ? C5 ADP 401 E 1 
HETATM 22 C C6 ADP . . . G 5 174.427 148.705 204.168 1 0 ? C6 ADP 401 E 1 
HETATM 23 N N6 ADP . . . G 5 174.702 147.406 203.992 1 0 ? N6 ADP 401 E 1 
HETATM 24 N N1 ADP . . . G 5 175.394 149.599 204.298 1 0 ? N1 ADP 401 E 1 
HETATM 25 C C2 ADP . . . G 5 175.142 150.955 204.477 1 0 ? C2 ADP 401 E 1 
HETATM 26 N N3 ADP . . . G 5 173.938 151.51 204.525 1 0 ? N3 ADP 401 E 1 
HETATM 27 C C4 ADP . . . G 5 173.001 150.553 204.387 1 0 ? C4 ADP 401 E 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    86 
_model_server_stats.query_time_ms           406 
_model_server_stats.encode_time_ms          50 
_model_server_stats.element_count           27 
#