data_5H5E # _model_server_result.job_id 13rYHujRe2jkFZGDolpVgg _model_server_result.datetime_utc '2024-11-29 08:51:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5H5E # _exptl.entry_id 5H5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.4 _cell.angle_gamma 90 _cell.entry_id 5H5E _cell.length_a 38.731 _cell.length_b 58.035 _cell.length_c 43.357 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 5H5E _atom_sites.fract_transf_matrix[1][1] 0.025819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0076 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 HOH A 1 401 45 HOH HOH . C 3 HOH A 2 402 7 HOH HOH . C 3 HOH A 3 403 54 HOH HOH . C 3 HOH A 4 404 27 HOH HOH . C 3 HOH A 5 405 21 HOH HOH . C 3 HOH A 6 406 40 HOH HOH . C 3 HOH A 7 407 15 HOH HOH . C 3 HOH A 8 408 4 HOH HOH . C 3 HOH A 9 409 25 HOH HOH . C 3 HOH A 10 410 57 HOH HOH . C 3 HOH A 11 411 38 HOH HOH . C 3 HOH A 12 412 53 HOH HOH . C 3 HOH A 13 413 28 HOH HOH . C 3 HOH A 14 414 29 HOH HOH . C 3 HOH A 15 415 34 HOH HOH . C 3 HOH A 16 416 1 HOH HOH . C 3 HOH A 17 417 2 HOH HOH . C 3 HOH A 18 418 5 HOH HOH . C 3 HOH A 19 419 3 HOH HOH . C 3 HOH A 20 420 47 HOH HOH . C 3 HOH A 21 421 11 HOH HOH . C 3 HOH A 22 422 46 HOH HOH . C 3 HOH A 23 423 55 HOH HOH . C 3 HOH A 24 424 52 HOH HOH . C 3 HOH A 25 425 18 HOH HOH . C 3 HOH A 26 426 35 HOH HOH . C 3 HOH A 27 427 16 HOH HOH . C 3 HOH A 28 428 31 HOH HOH . C 3 HOH A 29 429 19 HOH HOH . C 3 HOH A 30 430 33 HOH HOH . C 3 HOH A 31 431 12 HOH HOH . C 3 HOH A 32 432 39 HOH HOH . C 3 HOH A 33 433 10 HOH HOH . C 3 HOH A 34 434 17 HOH HOH . C 3 HOH A 35 435 6 HOH HOH . C 3 HOH A 36 436 8 HOH HOH . C 3 HOH A 37 437 43 HOH HOH . C 3 HOH A 38 438 13 HOH HOH . C 3 HOH A 39 439 23 HOH HOH . C 3 HOH A 40 440 42 HOH HOH . C 3 HOH A 41 441 22 HOH HOH . C 3 HOH A 42 442 20 HOH HOH . C 3 HOH A 43 443 26 HOH HOH . C 3 HOH A 44 444 41 HOH HOH . C 3 HOH A 45 445 56 HOH HOH . C 3 HOH A 46 446 59 HOH HOH . C 3 HOH A 47 447 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -8.21 -1.648 -8.178 1 57.81 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 -9.66 -1.509 -8.495 1 45.17 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 -10.432 -2.609 -7.763 1 48.93 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 -9.893 -3.985 -8.166 1 48.48 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 -11.137 -5.222 -8.487 1 35.25 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 -10.157 -0.139 -8.107 1 47.52 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 -11.119 0.361 -8.727 1 44.61 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 -9.601 0.464 -7.162 1 40.74 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 -11.57 -6.213 -7.075 1 33.78 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 -10.567 -7.263 -6.551 1 27.23 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 -10.374 -8.384 -7.429 1 23.91 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 -9.169 -6.734 -6.269 1 26.91 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 -9.054 -6.128 -4.983 1 24.02 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 -8.26 -7.935 -6.408 1 19.45 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 -8.035 -8.574 -5.142 1 21.18 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 -9.012 -8.828 -7.385 1 25.96 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 -8.459 -8.619 -8.757 1 27.7 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 -9.097 -8.025 -9.784 1 24.93 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 -8.325 -7.979 -10.91 1 29.37 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 -7.154 -8.558 -10.592 1 28.27 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 -5.879 -8.846 -11.289 1 27.03 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 -5.702 -8.512 -12.582 1 24.99 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 -4.898 -9.464 -10.608 1 25.09 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 -5.071 -9.807 -9.323 1 25.55 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 -6.193 -9.581 -8.621 1 26.89 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 -7.252 -8.97 -9.183 1 24.81 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #