data_5H5K
#
_model_server_result.job_id            VFN3h71fhsISbYN_ADiekg 
_model_server_result.datetime_utc      '2025-02-17 17:27:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h5k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5H5K 
#
_exptl.entry_id    5H5K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         92 
_cell.angle_beta          92.3 
_cell.angle_gamma         112.22 
_cell.entry_id            5H5K 
_cell.length_a            42.84 
_cell.length_b            51.863 
_cell.length_c            53.595 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H5K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 14 A THR 14 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc2 C MG MG . A MG 201 1_555 D O1G ATP . A ATP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc3 C MG MG . A MG 201 1_555 D O1B ATP . A ATP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc4 C MG MG . A MG 201 1_555 L O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc5 C MG MG . A MG 201 1_555 L O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc6 B OG1 THR 14 B THR 14 1_555 I MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc7 I MG MG . B MG 201 1_555 J O1G ATP . B ATP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc8 I MG MG . B MG 201 1_555 J O1B ATP . B ATP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc9 I MG MG . B MG 201 1_555 K O1P C5P . B C5P 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     5H5K 
_atom_sites.fract_transf_matrix[1][1]    0.023343 
_atom_sites.fract_transf_matrix[1][2]    0.009537 
_atom_sites.fract_transf_matrix[1][3]    0.001457 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020829 
_atom_sites.fract_transf_matrix[2][3]    0.001128 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018701 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 201 3 MG MG . 
D 3 ATP A 1 202 1 ATP ATP . 
E 4 EDO A 1 203 1 EDO EDO . 
F 4 EDO A 1 204 2 EDO EDO . 
G 4 EDO A 1 205 3 EDO EDO . 
H 5 C5P A 1 206 1 C5P C5P . 
I 2 MG B 1 201 4 MG MG . 
J 3 ATP B 1 202 2 ATP ATP . 
K 5 C5P B 1 203 2 C5P C5P . 
L 6 HOH A 1 301 66 HOH HOH . 
L 6 HOH A 2 302 9 HOH HOH . 
L 6 HOH A 3 303 6 HOH HOH . 
L 6 HOH A 4 304 77 HOH HOH . 
L 6 HOH A 5 305 12 HOH HOH . 
L 6 HOH A 6 306 27 HOH HOH . 
L 6 HOH A 7 307 17 HOH HOH . 
L 6 HOH A 8 308 52 HOH HOH . 
L 6 HOH A 9 309 55 HOH HOH . 
L 6 HOH A 10 310 56 HOH HOH . 
L 6 HOH A 11 311 25 HOH HOH . 
L 6 HOH A 12 312 18 HOH HOH . 
L 6 HOH A 13 313 3 HOH HOH . 
L 6 HOH A 14 314 51 HOH HOH . 
L 6 HOH A 15 315 24 HOH HOH . 
L 6 HOH A 16 316 76 HOH HOH . 
L 6 HOH A 17 317 20 HOH HOH . 
L 6 HOH A 18 318 78 HOH HOH . 
L 6 HOH A 19 319 7 HOH HOH . 
L 6 HOH A 20 320 21 HOH HOH . 
L 6 HOH A 21 321 11 HOH HOH . 
L 6 HOH A 22 322 10 HOH HOH . 
L 6 HOH A 23 323 14 HOH HOH . 
L 6 HOH A 24 324 22 HOH HOH . 
L 6 HOH A 25 325 4 HOH HOH . 
L 6 HOH A 26 326 1 HOH HOH . 
L 6 HOH A 27 327 16 HOH HOH . 
L 6 HOH A 28 328 2 HOH HOH . 
L 6 HOH A 29 329 19 HOH HOH . 
L 6 HOH A 30 330 68 HOH HOH . 
L 6 HOH A 31 331 8 HOH HOH . 
L 6 HOH A 32 332 5 HOH HOH . 
L 6 HOH A 33 333 80 HOH HOH . 
L 6 HOH A 34 334 23 HOH HOH . 
L 6 HOH A 35 335 57 HOH HOH . 
L 6 HOH A 36 336 13 HOH HOH . 
L 6 HOH A 37 337 35 HOH HOH . 
L 6 HOH A 38 338 64 HOH HOH . 
L 6 HOH A 39 339 36 HOH HOH . 
L 6 HOH A 40 340 74 HOH HOH . 
M 6 HOH B 1 301 61 HOH HOH . 
M 6 HOH B 2 302 71 HOH HOH . 
M 6 HOH B 3 303 41 HOH HOH . 
M 6 HOH B 4 304 43 HOH HOH . 
M 6 HOH B 5 305 75 HOH HOH . 
M 6 HOH B 6 306 31 HOH HOH . 
M 6 HOH B 7 307 40 HOH HOH . 
M 6 HOH B 8 308 42 HOH HOH . 
M 6 HOH B 9 309 67 HOH HOH . 
M 6 HOH B 10 310 45 HOH HOH . 
M 6 HOH B 11 311 44 HOH HOH . 
M 6 HOH B 12 312 79 HOH HOH . 
M 6 HOH B 13 313 54 HOH HOH . 
M 6 HOH B 14 314 53 HOH HOH . 
M 6 HOH B 15 315 73 HOH HOH . 
M 6 HOH B 16 316 60 HOH HOH . 
M 6 HOH B 17 317 15 HOH HOH . 
M 6 HOH B 18 318 46 HOH HOH . 
M 6 HOH B 19 319 38 HOH HOH . 
M 6 HOH B 20 320 32 HOH HOH . 
M 6 HOH B 21 321 39 HOH HOH . 
M 6 HOH B 22 322 49 HOH HOH . 
M 6 HOH B 23 323 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . D 3 13.085 3.732 6.607 1 66.01 ? PG ATP 202 A 1 
HETATM 2 O O1G ATP . . . D 3 12.123 3.457 5.457 1 58.46 ? O1G ATP 202 A 1 
HETATM 3 O O2G ATP . . . D 3 13.027 5.109 7.258 1 54.05 ? O2G ATP 202 A 1 
HETATM 4 O O3G ATP . . . D 3 14.505 3.428 6.247 1 66.13 ? O3G ATP 202 A 1 
HETATM 5 P PB ATP . . . D 3 11.429 2.434 8.575 1 39.26 ? PB ATP 202 A 1 
HETATM 6 O O1B ATP . . . D 3 10.199 2.604 7.68 1 42.34 ? O1B ATP 202 A 1 
HETATM 7 O O2B ATP . . . D 3 11.51 3.183 9.871 1 41.75 ? O2B ATP 202 A 1 
HETATM 8 O O3B ATP . . . D 3 12.799 2.597 7.773 1 49.69 ? O3B ATP 202 A 1 
HETATM 9 P PA ATP . . . D 3 10.754 -0.214 8.199 1 52.57 ? PA ATP 202 A 1 
HETATM 10 O O1A ATP . . . D 3 10.743 0.132 6.722 1 57.11 ? O1A ATP 202 A 1 
HETATM 11 O O2A ATP . . . D 3 9.463 -0.658 8.848 1 49.14 ? O2A ATP 202 A 1 
HETATM 12 O O3A ATP . . . D 3 11.423 0.946 9.069 1 46.76 ? O3A ATP 202 A 1 
HETATM 13 O O5' ATP . . . D 3 12.014 -1.229 8.327 1 55.19 ? O5' ATP 202 A 1 
HETATM 14 C C5' ATP . . . D 3 12.406 -2.021 9.445 1 54.26 ? C5' ATP 202 A 1 
HETATM 15 C C4' ATP . . . D 3 12.987 -3.361 8.96 1 53.56 ? C4' ATP 202 A 1 
HETATM 16 O O4' ATP . . . D 3 12.95 -4.315 10.024 1 48.55 ? O4' ATP 202 A 1 
HETATM 17 C C3' ATP . . . D 3 12.158 -4.024 7.867 1 56.62 ? C3' ATP 202 A 1 
HETATM 18 O O3' ATP . . . D 3 12.928 -4.965 7.114 1 61.98 ? O3' ATP 202 A 1 
HETATM 19 C C2' ATP . . . D 3 11.056 -4.684 8.675 1 54.07 ? C2' ATP 202 A 1 
HETATM 20 O O2' ATP . . . D 3 10.435 -5.773 8.007 1 54.7 ? O2' ATP 202 A 1 
HETATM 21 C C1' ATP . . . D 3 11.753 -5.089 9.962 1 50.7 ? C1' ATP 202 A 1 
HETATM 22 N N9 ATP . . . D 3 11.002 -4.807 11.207 1 52.08 ? N9 ATP 202 A 1 
HETATM 23 C C8 ATP . . . D 3 9.937 -3.989 11.421 1 51.89 ? C8 ATP 202 A 1 
HETATM 24 N N7 ATP . . . D 3 9.558 -4.012 12.716 1 55.37 ? N7 ATP 202 A 1 
HETATM 25 C C5 ATP . . . D 3 10.406 -4.85 13.359 1 55.11 ? C5 ATP 202 A 1 
HETATM 26 C C6 ATP . . . D 3 10.586 -5.344 14.743 1 53.17 ? C6 ATP 202 A 1 
HETATM 27 N N6 ATP . . . D 3 9.757 -4.915 15.723 1 52.06 ? N6 ATP 202 A 1 
HETATM 28 N N1 ATP . . . D 3 11.611 -6.223 14.992 1 58.78 ? N1 ATP 202 A 1 
HETATM 29 C C2 ATP . . . D 3 12.452 -6.66 14.026 1 54.94 ? C2 ATP 202 A 1 
HETATM 30 N N3 ATP . . . D 3 12.336 -6.239 12.741 1 57.26 ? N3 ATP 202 A 1 
HETATM 31 C C4 ATP . . . D 3 11.357 -5.365 12.359 1 53.47 ? C4 ATP 202 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           40 
_model_server_stats.create_model_time_ms    122 
_model_server_stats.query_time_ms           2422 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           31 
#