data_5H5K
#
_model_server_result.job_id            dUfKw5kSAjdcfizjq9lgtg 
_model_server_result.datetime_utc      '2024-11-24 08:28:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h5k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":203}' 
#
_entry.id    5H5K 
#
_exptl.entry_id    5H5K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         92 
_cell.angle_beta          92.3 
_cell.angle_gamma         112.22 
_cell.entry_id            5H5K 
_cell.length_a            42.84 
_cell.length_b            51.863 
_cell.length_c            53.595 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H5K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 14 A THR 14 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc2 C MG MG . A MG 201 1_555 D O1G ATP . A ATP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc3 C MG MG . A MG 201 1_555 D O1B ATP . A ATP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc4 C MG MG . A MG 201 1_555 L O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc5 C MG MG . A MG 201 1_555 L O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc6 B OG1 THR 14 B THR 14 1_555 I MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc7 I MG MG . B MG 201 1_555 J O1G ATP . B ATP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc8 I MG MG . B MG 201 1_555 J O1B ATP . B ATP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc9 I MG MG . B MG 201 1_555 K O1P C5P . B C5P 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 155 n n 
C1 C2 EDO sing 156 n n 
C1 H11 EDO sing 157 n n 
C1 H12 EDO sing 158 n n 
O1 HO1 EDO sing 159 n n 
C2 O2 EDO sing 160 n n 
C2 H21 EDO sing 161 n n 
C2 H22 EDO sing 162 n n 
O2 HO2 EDO sing 163 n n 
#
_atom_sites.entry_id                     5H5K 
_atom_sites.fract_transf_matrix[1][1]    0.023343 
_atom_sites.fract_transf_matrix[1][2]    0.009537 
_atom_sites.fract_transf_matrix[1][3]    0.001457 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020829 
_atom_sites.fract_transf_matrix[2][3]    0.001128 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018701 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 201 3 MG MG . 
D 3 ATP A 1 202 1 ATP ATP . 
E 4 EDO A 1 203 1 EDO EDO . 
F 4 EDO A 1 204 2 EDO EDO . 
G 4 EDO A 1 205 3 EDO EDO . 
H 5 C5P A 1 206 1 C5P C5P . 
I 2 MG B 1 201 4 MG MG . 
J 3 ATP B 1 202 2 ATP ATP . 
K 5 C5P B 1 203 2 C5P C5P . 
L 6 HOH A 1 301 66 HOH HOH . 
L 6 HOH A 2 302 9 HOH HOH . 
L 6 HOH A 3 303 6 HOH HOH . 
L 6 HOH A 4 304 77 HOH HOH . 
L 6 HOH A 5 305 12 HOH HOH . 
L 6 HOH A 6 306 27 HOH HOH . 
L 6 HOH A 7 307 17 HOH HOH . 
L 6 HOH A 8 308 52 HOH HOH . 
L 6 HOH A 9 309 55 HOH HOH . 
L 6 HOH A 10 310 56 HOH HOH . 
L 6 HOH A 11 311 25 HOH HOH . 
L 6 HOH A 12 312 18 HOH HOH . 
L 6 HOH A 13 313 3 HOH HOH . 
L 6 HOH A 14 314 51 HOH HOH . 
L 6 HOH A 15 315 24 HOH HOH . 
L 6 HOH A 16 316 76 HOH HOH . 
L 6 HOH A 17 317 20 HOH HOH . 
L 6 HOH A 18 318 78 HOH HOH . 
L 6 HOH A 19 319 7 HOH HOH . 
L 6 HOH A 20 320 21 HOH HOH . 
L 6 HOH A 21 321 11 HOH HOH . 
L 6 HOH A 22 322 10 HOH HOH . 
L 6 HOH A 23 323 14 HOH HOH . 
L 6 HOH A 24 324 22 HOH HOH . 
L 6 HOH A 25 325 4 HOH HOH . 
L 6 HOH A 26 326 1 HOH HOH . 
L 6 HOH A 27 327 16 HOH HOH . 
L 6 HOH A 28 328 2 HOH HOH . 
L 6 HOH A 29 329 19 HOH HOH . 
L 6 HOH A 30 330 68 HOH HOH . 
L 6 HOH A 31 331 8 HOH HOH . 
L 6 HOH A 32 332 5 HOH HOH . 
L 6 HOH A 33 333 80 HOH HOH . 
L 6 HOH A 34 334 23 HOH HOH . 
L 6 HOH A 35 335 57 HOH HOH . 
L 6 HOH A 36 336 13 HOH HOH . 
L 6 HOH A 37 337 35 HOH HOH . 
L 6 HOH A 38 338 64 HOH HOH . 
L 6 HOH A 39 339 36 HOH HOH . 
L 6 HOH A 40 340 74 HOH HOH . 
M 6 HOH B 1 301 61 HOH HOH . 
M 6 HOH B 2 302 71 HOH HOH . 
M 6 HOH B 3 303 41 HOH HOH . 
M 6 HOH B 4 304 43 HOH HOH . 
M 6 HOH B 5 305 75 HOH HOH . 
M 6 HOH B 6 306 31 HOH HOH . 
M 6 HOH B 7 307 40 HOH HOH . 
M 6 HOH B 8 308 42 HOH HOH . 
M 6 HOH B 9 309 67 HOH HOH . 
M 6 HOH B 10 310 45 HOH HOH . 
M 6 HOH B 11 311 44 HOH HOH . 
M 6 HOH B 12 312 79 HOH HOH . 
M 6 HOH B 13 313 54 HOH HOH . 
M 6 HOH B 14 314 53 HOH HOH . 
M 6 HOH B 15 315 73 HOH HOH . 
M 6 HOH B 16 316 60 HOH HOH . 
M 6 HOH B 17 317 15 HOH HOH . 
M 6 HOH B 18 318 46 HOH HOH . 
M 6 HOH B 19 319 38 HOH HOH . 
M 6 HOH B 20 320 32 HOH HOH . 
M 6 HOH B 21 321 39 HOH HOH . 
M 6 HOH B 22 322 49 HOH HOH . 
M 6 HOH B 23 323 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 -11.99 6.016 1.917 1 64.42 ? C1 EDO 203 A 1 
HETATM 2 O O1 EDO . . . E 4 -13.248 5.42 1.565 1 57.61 ? O1 EDO 203 A 1 
HETATM 3 C C2 EDO . . . E 4 -10.851 4.99 2.06 1 63.57 ? C2 EDO 203 A 1 
HETATM 4 O O2 EDO . . . E 4 -10.603 4.634 3.444 1 60.89 ? O2 EDO 203 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#