data_5H5R # _model_server_result.job_id OYuyN0I8DXdEi5UZB555ew _model_server_result.datetime_utc '2024-12-04 08:59:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5H5R # _exptl.entry_id 5H5R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H5R _cell.length_a 41.247 _cell.length_b 41.247 _cell.length_c 92.902 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 2 B CYS 901 1_555 B SG CYS 10 B CYS 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? covale ? covale1 A C GLN 44 A GLN 72 1_555 A N OCS 45 A OCS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C OCS 45 A OCS 73 1_555 A N GLY 46 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C ACE 1 B ACE 900 1_555 B N CYS 2 B CYS 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 B C ARG 14 B ARG 913 1_555 B N NH2 15 B NH2 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 5H5R _atom_sites.fract_transf_matrix[1][1] 0.024244 _atom_sites.fract_transf_matrix[1][2] 0.013997 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 1 GOL GOL . D 4 HOH A 1 301 106 HOH HOH . D 4 HOH A 2 302 21 HOH HOH . D 4 HOH A 3 303 30 HOH HOH . D 4 HOH A 4 304 89 HOH HOH . D 4 HOH A 5 305 15 HOH HOH . D 4 HOH A 6 306 71 HOH HOH . D 4 HOH A 7 307 3 HOH HOH . D 4 HOH A 8 308 124 HOH HOH . D 4 HOH A 9 309 116 HOH HOH . D 4 HOH A 10 310 100 HOH HOH . D 4 HOH A 11 311 79 HOH HOH . D 4 HOH A 12 312 90 HOH HOH . D 4 HOH A 13 313 97 HOH HOH . D 4 HOH A 14 314 28 HOH HOH . D 4 HOH A 15 315 140 HOH HOH . D 4 HOH A 16 316 41 HOH HOH . D 4 HOH A 17 317 44 HOH HOH . D 4 HOH A 18 318 13 HOH HOH . D 4 HOH A 19 319 137 HOH HOH . D 4 HOH A 20 320 6 HOH HOH . D 4 HOH A 21 321 18 HOH HOH . D 4 HOH A 22 322 7 HOH HOH . D 4 HOH A 23 323 103 HOH HOH . D 4 HOH A 24 324 50 HOH HOH . D 4 HOH A 25 325 8 HOH HOH . D 4 HOH A 26 326 22 HOH HOH . D 4 HOH A 27 327 20 HOH HOH . D 4 HOH A 28 328 27 HOH HOH . D 4 HOH A 29 329 84 HOH HOH . D 4 HOH A 30 330 169 HOH HOH . D 4 HOH A 31 331 2 HOH HOH . D 4 HOH A 32 332 66 HOH HOH . D 4 HOH A 33 333 112 HOH HOH . D 4 HOH A 34 334 54 HOH HOH . D 4 HOH A 35 335 55 HOH HOH . D 4 HOH A 36 336 125 HOH HOH . D 4 HOH A 37 337 101 HOH HOH . D 4 HOH A 38 338 62 HOH HOH . D 4 HOH A 39 339 99 HOH HOH . D 4 HOH A 40 340 11 HOH HOH . D 4 HOH A 41 341 60 HOH HOH . D 4 HOH A 42 342 164 HOH HOH . D 4 HOH A 43 343 1 HOH HOH . D 4 HOH A 44 344 17 HOH HOH . D 4 HOH A 45 345 31 HOH HOH . D 4 HOH A 46 346 23 HOH HOH . D 4 HOH A 47 347 153 HOH HOH . D 4 HOH A 48 348 33 HOH HOH . D 4 HOH A 49 349 16 HOH HOH . D 4 HOH A 50 350 151 HOH HOH . D 4 HOH A 51 351 58 HOH HOH . D 4 HOH A 52 352 24 HOH HOH . D 4 HOH A 53 353 85 HOH HOH . D 4 HOH A 54 354 9 HOH HOH . D 4 HOH A 55 355 135 HOH HOH . D 4 HOH A 56 356 115 HOH HOH . D 4 HOH A 57 357 78 HOH HOH . D 4 HOH A 58 358 38 HOH HOH . D 4 HOH A 59 359 110 HOH HOH . D 4 HOH A 60 360 43 HOH HOH . D 4 HOH A 61 361 67 HOH HOH . D 4 HOH A 62 362 61 HOH HOH . D 4 HOH A 63 363 65 HOH HOH . D 4 HOH A 64 364 104 HOH HOH . D 4 HOH A 65 365 46 HOH HOH . D 4 HOH A 66 366 73 HOH HOH . D 4 HOH A 67 367 52 HOH HOH . D 4 HOH A 68 368 56 HOH HOH . D 4 HOH A 69 369 32 HOH HOH . D 4 HOH A 70 370 47 HOH HOH . D 4 HOH A 71 371 81 HOH HOH . D 4 HOH A 72 372 108 HOH HOH . D 4 HOH A 73 373 121 HOH HOH . D 4 HOH A 74 374 4 HOH HOH . D 4 HOH A 75 375 87 HOH HOH . D 4 HOH A 76 376 102 HOH HOH . D 4 HOH A 77 377 163 HOH HOH . D 4 HOH A 78 378 174 HOH HOH . D 4 HOH A 79 379 36 HOH HOH . D 4 HOH A 80 380 142 HOH HOH . D 4 HOH A 81 381 26 HOH HOH . D 4 HOH A 82 382 148 HOH HOH . D 4 HOH A 83 383 161 HOH HOH . D 4 HOH A 84 384 25 HOH HOH . D 4 HOH A 85 385 155 HOH HOH . D 4 HOH A 86 386 77 HOH HOH . D 4 HOH A 87 387 76 HOH HOH . D 4 HOH A 88 388 88 HOH HOH . D 4 HOH A 89 389 119 HOH HOH . D 4 HOH A 90 390 19 HOH HOH . D 4 HOH A 91 391 130 HOH HOH . D 4 HOH A 92 392 68 HOH HOH . D 4 HOH A 93 393 109 HOH HOH . D 4 HOH A 94 394 150 HOH HOH . D 4 HOH A 95 395 157 HOH HOH . D 4 HOH A 96 396 53 HOH HOH . D 4 HOH A 97 397 91 HOH HOH . D 4 HOH A 98 398 96 HOH HOH . D 4 HOH A 99 399 64 HOH HOH . D 4 HOH A 100 400 122 HOH HOH . D 4 HOH A 101 401 37 HOH HOH . D 4 HOH A 102 402 127 HOH HOH . D 4 HOH A 103 403 133 HOH HOH . D 4 HOH A 104 404 42 HOH HOH . D 4 HOH A 105 405 165 HOH HOH . D 4 HOH A 106 406 134 HOH HOH . D 4 HOH A 107 407 39 HOH HOH . D 4 HOH A 108 408 93 HOH HOH . D 4 HOH A 109 409 57 HOH HOH . D 4 HOH A 110 410 117 HOH HOH . D 4 HOH A 111 411 105 HOH HOH . D 4 HOH A 112 412 5 HOH HOH . D 4 HOH A 113 413 70 HOH HOH . D 4 HOH A 114 414 80 HOH HOH . D 4 HOH A 115 415 49 HOH HOH . D 4 HOH A 116 416 45 HOH HOH . D 4 HOH A 117 417 114 HOH HOH . D 4 HOH A 118 418 72 HOH HOH . D 4 HOH A 119 419 147 HOH HOH . D 4 HOH A 120 420 63 HOH HOH . D 4 HOH A 121 421 118 HOH HOH . D 4 HOH A 122 422 74 HOH HOH . D 4 HOH A 123 423 95 HOH HOH . D 4 HOH A 124 424 48 HOH HOH . D 4 HOH A 125 425 175 HOH HOH . D 4 HOH A 126 426 139 HOH HOH . D 4 HOH A 127 427 178 HOH HOH . D 4 HOH A 128 428 92 HOH HOH . D 4 HOH A 129 429 159 HOH HOH . D 4 HOH A 130 430 12 HOH HOH . D 4 HOH A 131 431 123 HOH HOH . D 4 HOH A 132 432 177 HOH HOH . D 4 HOH A 133 433 111 HOH HOH . D 4 HOH A 134 434 98 HOH HOH . D 4 HOH A 135 435 162 HOH HOH . D 4 HOH A 136 436 86 HOH HOH . D 4 HOH A 137 437 136 HOH HOH . D 4 HOH A 138 438 144 HOH HOH . D 4 HOH A 139 439 34 HOH HOH . D 4 HOH A 140 440 128 HOH HOH . D 4 HOH A 141 441 120 HOH HOH . D 4 HOH A 142 442 129 HOH HOH . D 4 HOH A 143 443 146 HOH HOH . D 4 HOH A 144 444 176 HOH HOH . D 4 HOH A 145 445 83 HOH HOH . D 4 HOH A 146 446 168 HOH HOH . D 4 HOH A 147 447 145 HOH HOH . D 4 HOH A 148 448 143 HOH HOH . D 4 HOH A 149 449 94 HOH HOH . D 4 HOH A 150 450 173 HOH HOH . D 4 HOH A 151 451 107 HOH HOH . D 4 HOH A 152 452 138 HOH HOH . D 4 HOH A 153 453 166 HOH HOH . D 4 HOH A 154 454 131 HOH HOH . D 4 HOH A 155 455 141 HOH HOH . D 4 HOH A 156 456 167 HOH HOH . D 4 HOH A 157 457 158 HOH HOH . D 4 HOH A 158 458 40 HOH HOH . D 4 HOH A 159 459 126 HOH HOH . D 4 HOH A 160 460 156 HOH HOH . D 4 HOH A 161 461 82 HOH HOH . D 4 HOH A 162 462 160 HOH HOH . D 4 HOH A 163 463 170 HOH HOH . D 4 HOH A 164 464 75 HOH HOH . D 4 HOH A 165 465 59 HOH HOH . D 4 HOH A 166 466 69 HOH HOH . E 4 HOH B 1 1001 113 HOH HOH . E 4 HOH B 2 1002 29 HOH HOH . E 4 HOH B 3 1003 149 HOH HOH . E 4 HOH B 4 1004 10 HOH HOH . E 4 HOH B 5 1005 14 HOH HOH . E 4 HOH B 6 1006 152 HOH HOH . E 4 HOH B 7 1007 172 HOH HOH . E 4 HOH B 8 1008 132 HOH HOH . E 4 HOH B 9 1009 35 HOH HOH . E 4 HOH B 10 1010 154 HOH HOH . E 4 HOH B 11 1011 51 HOH HOH . E 4 HOH B 12 1012 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 12.465 3.271 29.562 1 21.87 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . C 3 11.742 4.235 28.778 1 24.17 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . C 3 13.824 2.878 28.952 1 20.98 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . C 3 13.879 3.26 27.569 1 16.4 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . C 3 15.012 3.422 29.766 1 20.94 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . C 3 15.934 4.21 29.007 1 21.21 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #