data_5H6B # _model_server_result.job_id IkIL8jjko8_7DkSyxlQ-_g _model_server_result.datetime_utc '2024-11-17 05:52:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5H6B # _exptl.entry_id 5H6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5H6B _cell.length_a 90.73 _cell.length_b 90.73 _cell.length_c 70.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 136.095 78.574485 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 225 A CYS 225 1_555 A SG CYS 260 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc1 A OD1 ASP 44 A ASP 44 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 A OD2 ASP 64 A ASP 64 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc3 A NE2 HIS 75 A HIS 75 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 A OD1 ASP 88 A ASP 88 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc5 A NE2 HIS 139 A HIS 139 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc6 A OD1 ASP 185 A ASP 185 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 J O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc8 B ZN ZN . A ZN 301 1_555 J O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc9 B ZN ZN . A ZN 301 1_555 G OXT ACT . A ACT 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc10 C ZN ZN . A ZN 302 1_555 I N1 IMD . A IMD 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc11 D ZN ZN . A ZN 303 1_555 F O ACT . A ACT 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc12 D ZN ZN . A ZN 303 1_555 F OXT ACT . A ACT 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc13 D ZN ZN . A ZN 303 1_555 H N3 IMD . A IMD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc14 A OD2 ASP 212 A ASP 212 1_555 C ZN ZN . A ZN 302 6_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5H6B _atom_sites.fract_transf_matrix[1][1] 0.011022 _atom_sites.fract_transf_matrix[1][2] 0.006363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 2 ZN A 1 302 2 ZN ZN . D 2 ZN A 1 303 3 ZN ZN . E 2 ZN A 1 304 4 ZN ZN . F 3 ACT A 1 305 1 ACT ACT . G 3 ACT A 1 306 2 ACT ACT . H 4 IMD A 1 307 1 IMD IMD . I 4 IMD A 1 308 2 IMD IMD . J 5 HOH A 1 401 23 HOH HOH . J 5 HOH A 2 402 7 HOH HOH . J 5 HOH A 3 403 12 HOH HOH . J 5 HOH A 4 404 21 HOH HOH . J 5 HOH A 5 405 18 HOH HOH . J 5 HOH A 6 406 9 HOH HOH . J 5 HOH A 7 407 11 HOH HOH . J 5 HOH A 8 408 26 HOH HOH . J 5 HOH A 9 409 5 HOH HOH . J 5 HOH A 10 410 28 HOH HOH . J 5 HOH A 11 411 2 HOH HOH . J 5 HOH A 12 412 3 HOH HOH . J 5 HOH A 13 413 1 HOH HOH . J 5 HOH A 14 414 22 HOH HOH . J 5 HOH A 15 415 33 HOH HOH . J 5 HOH A 16 416 6 HOH HOH . J 5 HOH A 17 417 17 HOH HOH . J 5 HOH A 18 418 14 HOH HOH . J 5 HOH A 19 419 36 HOH HOH . J 5 HOH A 20 420 44 HOH HOH . J 5 HOH A 21 421 35 HOH HOH . J 5 HOH A 22 422 41 HOH HOH . J 5 HOH A 23 423 20 HOH HOH . J 5 HOH A 24 424 45 HOH HOH . J 5 HOH A 25 425 4 HOH HOH . J 5 HOH A 26 426 27 HOH HOH . J 5 HOH A 27 427 37 HOH HOH . J 5 HOH A 28 428 19 HOH HOH . J 5 HOH A 29 429 31 HOH HOH . J 5 HOH A 30 430 30 HOH HOH . J 5 HOH A 31 431 8 HOH HOH . J 5 HOH A 32 432 38 HOH HOH . J 5 HOH A 33 433 39 HOH HOH . J 5 HOH A 34 434 29 HOH HOH . J 5 HOH A 35 435 16 HOH HOH . J 5 HOH A 36 436 32 HOH HOH . J 5 HOH A 37 437 40 HOH HOH . J 5 HOH A 38 438 15 HOH HOH . J 5 HOH A 39 439 43 HOH HOH . J 5 HOH A 40 440 24 HOH HOH . J 5 HOH A 41 441 25 HOH HOH . J 5 HOH A 42 442 13 HOH HOH . J 5 HOH A 43 443 10 HOH HOH . J 5 HOH A 44 444 34 HOH HOH . J 5 HOH A 45 445 42 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 70.917 _atom_site.Cartn_y 12.08 _atom_site.Cartn_z -0.186 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #