data_5H6K
#
_model_server_result.job_id            sXOzoom2O8TAV--EltFNbw 
_model_server_result.datetime_utc      '2024-11-05 02:20:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5h6k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5H6K 
#
_exptl.entry_id    5H6K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5H6K 
_cell.length_a            93.383 
_cell.length_b            93.383 
_cell.length_c            120.614 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5H6K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5H6K 
_atom_sites.fract_transf_matrix[1][1]    0.010709 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 301 1 EDO EDO . 
D 2 EDO A 1 302 4 EDO EDO . 
E 2 EDO A 1 303 5 EDO EDO . 
F 2 EDO B 1 301 3 EDO EDO . 
G 3 HOH A 1 401 16 HOH HOH . 
G 3 HOH A 2 402 89 HOH HOH . 
G 3 HOH A 3 403 67 HOH HOH . 
G 3 HOH A 4 404 78 HOH HOH . 
G 3 HOH A 5 405 246 HOH HOH . 
G 3 HOH A 6 406 111 HOH HOH . 
G 3 HOH A 7 407 175 HOH HOH . 
G 3 HOH A 8 408 70 HOH HOH . 
G 3 HOH A 9 409 316 HOH HOH . 
G 3 HOH A 10 410 270 HOH HOH . 
G 3 HOH A 11 411 80 HOH HOH . 
G 3 HOH A 12 412 37 HOH HOH . 
G 3 HOH A 13 413 15 HOH HOH . 
G 3 HOH A 14 414 74 HOH HOH . 
G 3 HOH A 15 415 56 HOH HOH . 
G 3 HOH A 16 416 34 HOH HOH . 
G 3 HOH A 17 417 150 HOH HOH . 
G 3 HOH A 18 418 109 HOH HOH . 
G 3 HOH A 19 419 41 HOH HOH . 
G 3 HOH A 20 420 73 HOH HOH . 
G 3 HOH A 21 421 65 HOH HOH . 
G 3 HOH A 22 422 72 HOH HOH . 
G 3 HOH A 23 423 17 HOH HOH . 
G 3 HOH A 24 424 174 HOH HOH . 
G 3 HOH A 25 425 151 HOH HOH . 
G 3 HOH A 26 426 146 HOH HOH . 
G 3 HOH A 27 427 170 HOH HOH . 
G 3 HOH A 28 428 137 HOH HOH . 
G 3 HOH A 29 429 230 HOH HOH . 
G 3 HOH A 30 430 54 HOH HOH . 
G 3 HOH A 31 431 219 HOH HOH . 
G 3 HOH A 32 432 260 HOH HOH . 
G 3 HOH A 33 433 298 HOH HOH . 
G 3 HOH A 34 434 116 HOH HOH . 
G 3 HOH A 35 435 147 HOH HOH . 
G 3 HOH A 36 436 200 HOH HOH . 
G 3 HOH A 37 437 19 HOH HOH . 
G 3 HOH A 38 438 4 HOH HOH . 
G 3 HOH A 39 439 25 HOH HOH . 
G 3 HOH A 40 440 225 HOH HOH . 
G 3 HOH A 41 441 169 HOH HOH . 
G 3 HOH A 42 442 13 HOH HOH . 
G 3 HOH A 43 443 38 HOH HOH . 
G 3 HOH A 44 444 86 HOH HOH . 
G 3 HOH A 45 445 84 HOH HOH . 
G 3 HOH A 46 446 50 HOH HOH . 
G 3 HOH A 47 447 68 HOH HOH . 
G 3 HOH A 48 448 341 HOH HOH . 
G 3 HOH A 49 449 119 HOH HOH . 
G 3 HOH A 50 450 27 HOH HOH . 
G 3 HOH A 51 451 57 HOH HOH . 
G 3 HOH A 52 452 40 HOH HOH . 
G 3 HOH A 53 453 36 HOH HOH . 
G 3 HOH A 54 454 143 HOH HOH . 
G 3 HOH A 55 455 10 HOH HOH . 
G 3 HOH A 56 456 45 HOH HOH . 
G 3 HOH A 57 457 29 HOH HOH . 
G 3 HOH A 58 458 145 HOH HOH . 
G 3 HOH A 59 459 104 HOH HOH . 
G 3 HOH A 60 460 31 HOH HOH . 
G 3 HOH A 61 461 106 HOH HOH . 
G 3 HOH A 62 462 46 HOH HOH . 
G 3 HOH A 63 463 42 HOH HOH . 
G 3 HOH A 64 464 6 HOH HOH . 
G 3 HOH A 65 465 107 HOH HOH . 
G 3 HOH A 66 466 214 HOH HOH . 
G 3 HOH A 67 467 47 HOH HOH . 
G 3 HOH A 68 468 242 HOH HOH . 
G 3 HOH A 69 469 59 HOH HOH . 
G 3 HOH A 70 470 209 HOH HOH . 
G 3 HOH A 71 471 115 HOH HOH . 
G 3 HOH A 72 472 129 HOH HOH . 
G 3 HOH A 73 473 69 HOH HOH . 
G 3 HOH A 74 474 108 HOH HOH . 
G 3 HOH A 75 475 58 HOH HOH . 
G 3 HOH A 76 476 124 HOH HOH . 
G 3 HOH A 77 477 172 HOH HOH . 
G 3 HOH A 78 478 14 HOH HOH . 
G 3 HOH A 79 479 30 HOH HOH . 
G 3 HOH A 80 480 267 HOH HOH . 
G 3 HOH A 81 481 276 HOH HOH . 
G 3 HOH A 82 482 282 HOH HOH . 
G 3 HOH A 83 483 49 HOH HOH . 
G 3 HOH A 84 484 33 HOH HOH . 
G 3 HOH A 85 485 91 HOH HOH . 
G 3 HOH A 86 486 221 HOH HOH . 
G 3 HOH A 87 487 190 HOH HOH . 
G 3 HOH A 88 488 48 HOH HOH . 
G 3 HOH A 89 489 128 HOH HOH . 
G 3 HOH A 90 490 262 HOH HOH . 
G 3 HOH A 91 491 110 HOH HOH . 
G 3 HOH A 92 492 1 HOH HOH . 
G 3 HOH A 93 493 102 HOH HOH . 
G 3 HOH A 94 494 176 HOH HOH . 
G 3 HOH A 95 495 51 HOH HOH . 
G 3 HOH A 96 496 231 HOH HOH . 
G 3 HOH A 97 497 228 HOH HOH . 
G 3 HOH A 98 498 288 HOH HOH . 
G 3 HOH A 99 499 63 HOH HOH . 
G 3 HOH A 100 500 257 HOH HOH . 
G 3 HOH A 101 501 205 HOH HOH . 
G 3 HOH A 102 502 12 HOH HOH . 
G 3 HOH A 103 503 98 HOH HOH . 
G 3 HOH A 104 504 159 HOH HOH . 
G 3 HOH A 105 505 256 HOH HOH . 
G 3 HOH A 106 506 81 HOH HOH . 
G 3 HOH A 107 507 87 HOH HOH . 
G 3 HOH A 108 508 239 HOH HOH . 
G 3 HOH A 109 509 299 HOH HOH . 
G 3 HOH A 110 510 315 HOH HOH . 
G 3 HOH A 111 511 61 HOH HOH . 
G 3 HOH A 112 512 334 HOH HOH . 
G 3 HOH A 113 513 125 HOH HOH . 
G 3 HOH A 114 514 285 HOH HOH . 
G 3 HOH A 115 515 134 HOH HOH . 
G 3 HOH A 116 516 162 HOH HOH . 
G 3 HOH A 117 517 258 HOH HOH . 
G 3 HOH A 118 518 183 HOH HOH . 
G 3 HOH A 119 519 43 HOH HOH . 
G 3 HOH A 120 520 300 HOH HOH . 
G 3 HOH A 121 521 212 HOH HOH . 
G 3 HOH A 122 522 326 HOH HOH . 
G 3 HOH A 123 523 117 HOH HOH . 
G 3 HOH A 124 524 233 HOH HOH . 
G 3 HOH A 125 525 101 HOH HOH . 
G 3 HOH A 126 526 121 HOH HOH . 
G 3 HOH A 127 527 133 HOH HOH . 
G 3 HOH A 128 528 90 HOH HOH . 
G 3 HOH A 129 529 222 HOH HOH . 
G 3 HOH A 130 530 208 HOH HOH . 
G 3 HOH A 131 531 294 HOH HOH . 
G 3 HOH A 132 532 156 HOH HOH . 
G 3 HOH A 133 533 191 HOH HOH . 
G 3 HOH A 134 534 342 HOH HOH . 
G 3 HOH A 135 535 112 HOH HOH . 
G 3 HOH A 136 536 240 HOH HOH . 
G 3 HOH A 137 537 277 HOH HOH . 
G 3 HOH A 138 538 152 HOH HOH . 
G 3 HOH A 139 539 227 HOH HOH . 
G 3 HOH A 140 540 210 HOH HOH . 
G 3 HOH A 141 541 335 HOH HOH . 
G 3 HOH A 142 542 287 HOH HOH . 
G 3 HOH A 143 543 131 HOH HOH . 
G 3 HOH A 144 544 140 HOH HOH . 
G 3 HOH A 145 545 322 HOH HOH . 
G 3 HOH A 146 546 23 HOH HOH . 
H 3 HOH B 1 401 113 HOH HOH . 
H 3 HOH B 2 402 215 HOH HOH . 
H 3 HOH B 3 403 177 HOH HOH . 
H 3 HOH B 4 404 8 HOH HOH . 
H 3 HOH B 5 405 126 HOH HOH . 
H 3 HOH B 6 406 76 HOH HOH . 
H 3 HOH B 7 407 132 HOH HOH . 
H 3 HOH B 8 408 144 HOH HOH . 
H 3 HOH B 9 409 18 HOH HOH . 
H 3 HOH B 10 410 321 HOH HOH . 
H 3 HOH B 11 411 333 HOH HOH . 
H 3 HOH B 12 412 26 HOH HOH . 
H 3 HOH B 13 413 207 HOH HOH . 
H 3 HOH B 14 414 220 HOH HOH . 
H 3 HOH B 15 415 2 HOH HOH . 
H 3 HOH B 16 416 296 HOH HOH . 
H 3 HOH B 17 417 71 HOH HOH . 
H 3 HOH B 18 418 229 HOH HOH . 
H 3 HOH B 19 419 95 HOH HOH . 
H 3 HOH B 20 420 310 HOH HOH . 
H 3 HOH B 21 421 44 HOH HOH . 
H 3 HOH B 22 422 20 HOH HOH . 
H 3 HOH B 23 423 53 HOH HOH . 
H 3 HOH B 24 424 217 HOH HOH . 
H 3 HOH B 25 425 167 HOH HOH . 
H 3 HOH B 26 426 85 HOH HOH . 
H 3 HOH B 27 427 24 HOH HOH . 
H 3 HOH B 28 428 77 HOH HOH . 
H 3 HOH B 29 429 236 HOH HOH . 
H 3 HOH B 30 430 154 HOH HOH . 
H 3 HOH B 31 431 52 HOH HOH . 
H 3 HOH B 32 432 3 HOH HOH . 
H 3 HOH B 33 433 148 HOH HOH . 
H 3 HOH B 34 434 96 HOH HOH . 
H 3 HOH B 35 435 198 HOH HOH . 
H 3 HOH B 36 436 22 HOH HOH . 
H 3 HOH B 37 437 243 HOH HOH . 
H 3 HOH B 38 438 245 HOH HOH . 
H 3 HOH B 39 439 7 HOH HOH . 
H 3 HOH B 40 440 235 HOH HOH . 
H 3 HOH B 41 441 35 HOH HOH . 
H 3 HOH B 42 442 79 HOH HOH . 
H 3 HOH B 43 443 173 HOH HOH . 
H 3 HOH B 44 444 178 HOH HOH . 
H 3 HOH B 45 445 182 HOH HOH . 
H 3 HOH B 46 446 5 HOH HOH . 
H 3 HOH B 47 447 141 HOH HOH . 
H 3 HOH B 48 448 327 HOH HOH . 
H 3 HOH B 49 449 157 HOH HOH . 
H 3 HOH B 50 450 185 HOH HOH . 
H 3 HOH B 51 451 123 HOH HOH . 
H 3 HOH B 52 452 60 HOH HOH . 
H 3 HOH B 53 453 186 HOH HOH . 
H 3 HOH B 54 454 136 HOH HOH . 
H 3 HOH B 55 455 139 HOH HOH . 
H 3 HOH B 56 456 9 HOH HOH . 
H 3 HOH B 57 457 62 HOH HOH . 
H 3 HOH B 58 458 247 HOH HOH . 
H 3 HOH B 59 459 264 HOH HOH . 
H 3 HOH B 60 460 292 HOH HOH . 
H 3 HOH B 61 461 255 HOH HOH . 
H 3 HOH B 62 462 269 HOH HOH . 
H 3 HOH B 63 463 11 HOH HOH . 
H 3 HOH B 64 464 160 HOH HOH . 
H 3 HOH B 65 465 238 HOH HOH . 
H 3 HOH B 66 466 75 HOH HOH . 
H 3 HOH B 67 467 100 HOH HOH . 
H 3 HOH B 68 468 82 HOH HOH . 
H 3 HOH B 69 469 97 HOH HOH . 
H 3 HOH B 70 470 93 HOH HOH . 
H 3 HOH B 71 471 94 HOH HOH . 
H 3 HOH B 72 472 187 HOH HOH . 
H 3 HOH B 73 473 103 HOH HOH . 
H 3 HOH B 74 474 251 HOH HOH . 
H 3 HOH B 75 475 338 HOH HOH . 
H 3 HOH B 76 476 291 HOH HOH . 
H 3 HOH B 77 477 244 HOH HOH . 
H 3 HOH B 78 478 142 HOH HOH . 
H 3 HOH B 79 479 226 HOH HOH . 
H 3 HOH B 80 480 218 HOH HOH . 
H 3 HOH B 81 481 88 HOH HOH . 
H 3 HOH B 82 482 163 HOH HOH . 
H 3 HOH B 83 483 319 HOH HOH . 
H 3 HOH B 84 484 332 HOH HOH . 
H 3 HOH B 85 485 135 HOH HOH . 
H 3 HOH B 86 486 237 HOH HOH . 
H 3 HOH B 87 487 293 HOH HOH . 
H 3 HOH B 88 488 305 HOH HOH . 
H 3 HOH B 89 489 320 HOH HOH . 
H 3 HOH B 90 490 197 HOH HOH . 
H 3 HOH B 91 491 118 HOH HOH . 
H 3 HOH B 92 492 309 HOH HOH . 
H 3 HOH B 93 493 158 HOH HOH . 
H 3 HOH B 94 494 165 HOH HOH . 
H 3 HOH B 95 495 204 HOH HOH . 
H 3 HOH B 96 496 179 HOH HOH . 
H 3 HOH B 97 497 64 HOH HOH . 
H 3 HOH B 98 498 284 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 -10.512 19.03 17.7 1 36.12 ? C1 EDO 302 A 1 
HETATM 2 O O1 EDO . . . D 2 -9.576 17.996 18.025 1 33.26 ? O1 EDO 302 A 1 
HETATM 3 C C2 EDO . . . D 2 -10.725 19.933 18.909 1 37.18 ? C2 EDO 302 A 1 
HETATM 4 O O2 EDO . . . D 2 -9.714 20.951 18.928 1 38.2 ? O2 EDO 302 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           4 
#