data_5H6Q # _model_server_result.job_id 8RgNnDMckD51LQoeGq93kg _model_server_result.datetime_utc '2024-11-27 23:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h6q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":905}' # _entry.id 5H6Q # _exptl.entry_id 5H6Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H6Q _cell.length_a 120.825 _cell.length_b 180.488 _cell.length_c 233.375 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H6Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5H6Q _atom_sites.fract_transf_matrix[1][1] 0.008276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 901 1 GOL GOL . E 4 GOL A 1 902 2 GOL GOL . F 4 GOL A 1 903 3 GOL GOL . G 4 GOL A 1 904 4 GOL GOL . H 5 FAD A 1 905 1 FAD FAD . I 6 HOH A 1 1001 24 HOH HOH . I 6 HOH A 2 1002 21 HOH HOH . I 6 HOH A 3 1003 29 HOH HOH . I 6 HOH A 4 1004 22 HOH HOH . I 6 HOH A 5 1005 7 HOH HOH . I 6 HOH A 6 1006 19 HOH HOH . I 6 HOH A 7 1007 35 HOH HOH . I 6 HOH A 8 1008 20 HOH HOH . I 6 HOH A 9 1009 6 HOH HOH . I 6 HOH A 10 1010 3 HOH HOH . I 6 HOH A 11 1011 5 HOH HOH . I 6 HOH A 12 1012 1 HOH HOH . I 6 HOH A 13 1013 13 HOH HOH . I 6 HOH A 14 1014 8 HOH HOH . I 6 HOH A 15 1015 18 HOH HOH . I 6 HOH A 16 1016 27 HOH HOH . I 6 HOH A 17 1017 38 HOH HOH . I 6 HOH A 18 1018 23 HOH HOH . I 6 HOH A 19 1019 14 HOH HOH . I 6 HOH A 20 1020 12 HOH HOH . I 6 HOH A 21 1021 26 HOH HOH . I 6 HOH A 22 1022 39 HOH HOH . I 6 HOH A 23 1023 11 HOH HOH . I 6 HOH A 24 1024 15 HOH HOH . I 6 HOH A 25 1025 9 HOH HOH . I 6 HOH A 26 1026 10 HOH HOH . I 6 HOH A 27 1027 30 HOH HOH . I 6 HOH A 28 1028 37 HOH HOH . I 6 HOH A 29 1029 2 HOH HOH . I 6 HOH A 30 1030 28 HOH HOH . I 6 HOH A 31 1031 42 HOH HOH . I 6 HOH A 32 1032 4 HOH HOH . I 6 HOH A 33 1033 34 HOH HOH . I 6 HOH A 34 1034 32 HOH HOH . I 6 HOH A 35 1035 36 HOH HOH . I 6 HOH A 36 1036 40 HOH HOH . I 6 HOH A 37 1037 31 HOH HOH . I 6 HOH A 38 1038 41 HOH HOH . I 6 HOH A 39 1039 16 HOH HOH . I 6 HOH A 40 1040 25 HOH HOH . J 6 HOH B 1 501 33 HOH HOH . J 6 HOH B 2 502 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . H 5 6.523 -68.248 -28.93 1 38.27 ? PA FAD 905 A 1 HETATM 2 O O1A FAD . . . H 5 5.589 -68.717 -29.999 1 38.62 ? O1A FAD 905 A 1 HETATM 3 O O2A FAD . . . H 5 7.851 -67.603 -29.187 1 46.38 ? O2A FAD 905 A 1 HETATM 4 O O5B FAD . . . H 5 6.871 -69.538 -28.065 1 42.27 ? O5B FAD 905 A 1 HETATM 5 C C5B FAD . . . H 5 5.941 -70.59 -27.84 1 38.24 ? C5B FAD 905 A 1 HETATM 6 C C4B FAD . . . H 5 6.64 -71.929 -28.036 1 36.73 ? C4B FAD 905 A 1 HETATM 7 O O4B FAD . . . H 5 5.651 -72.936 -27.887 1 37 ? O4B FAD 905 A 1 HETATM 8 C C3B FAD . . . H 5 7.17 -72.122 -29.444 1 34.83 ? C3B FAD 905 A 1 HETATM 9 O O3B FAD . . . H 5 8.493 -72.56 -29.41 1 40.3 ? O3B FAD 905 A 1 HETATM 10 C C2B FAD . . . H 5 6.345 -73.221 -30.053 1 35.85 ? C2B FAD 905 A 1 HETATM 11 O O2B FAD . . . H 5 7.079 -73.997 -31.002 1 34.65 ? O2B FAD 905 A 1 HETATM 12 C C1B FAD . . . H 5 5.961 -73.959 -28.802 1 36.37 ? C1B FAD 905 A 1 HETATM 13 N N9A FAD . . . H 5 4.811 -74.851 -28.918 1 40.12 ? N9A FAD 905 A 1 HETATM 14 C C8A FAD . . . H 5 3.661 -74.684 -29.602 1 40.17 ? C8A FAD 905 A 1 HETATM 15 N N7A FAD . . . H 5 2.844 -75.754 -29.458 1 36.23 ? N7A FAD 905 A 1 HETATM 16 C C5A FAD . . . H 5 3.498 -76.626 -28.667 1 38.66 ? C5A FAD 905 A 1 HETATM 17 C C6A FAD . . . H 5 3.233 -77.959 -28.105 1 39.56 ? C6A FAD 905 A 1 HETATM 18 N N6A FAD . . . H 5 2.067 -78.592 -28.365 1 44.27 ? N6A FAD 905 A 1 HETATM 19 N N1A FAD . . . H 5 4.166 -78.513 -27.328 1 40.07 ? N1A FAD 905 A 1 HETATM 20 C C2A FAD . . . H 5 5.337 -77.916 -27.047 1 41.38 ? C2A FAD 905 A 1 HETATM 21 N N3A FAD . . . H 5 5.655 -76.709 -27.537 1 42.5 ? N3A FAD 905 A 1 HETATM 22 C C4A FAD . . . H 5 4.787 -76.032 -28.32 1 40.57 ? C4A FAD 905 A 1 HETATM 23 N N1 FAD . . . H 5 8.217 -58.603 -31.724 1 46.7 ? N1 FAD 905 A 1 HETATM 24 C C2 FAD . . . H 5 9.009 -57.538 -31.62 1 47.97 ? C2 FAD 905 A 1 HETATM 25 O O2 FAD . . . H 5 9.251 -57.112 -30.476 1 53.72 ? O2 FAD 905 A 1 HETATM 26 N N3 FAD . . . H 5 9.509 -56.91 -32.704 1 53.21 ? N3 FAD 905 A 1 HETATM 27 C C4 FAD . . . H 5 9.264 -57.322 -33.952 1 47.27 ? C4 FAD 905 A 1 HETATM 28 O O4 FAD . . . H 5 9.75 -56.772 -34.949 1 51.31 ? O4 FAD 905 A 1 HETATM 29 C C4X FAD . . . H 5 8.394 -58.471 -34.14 1 46.28 ? C4X FAD 905 A 1 HETATM 30 N N5 FAD . . . H 5 8.133 -58.93 -35.361 1 45.45 ? N5 FAD 905 A 1 HETATM 31 C C5X FAD . . . H 5 7.368 -60.004 -35.542 1 44.87 ? C5X FAD 905 A 1 HETATM 32 C C6 FAD . . . H 5 7.152 -60.445 -36.842 1 45.62 ? C6 FAD 905 A 1 HETATM 33 C C7 FAD . . . H 5 6.386 -61.567 -37.052 1 47.52 ? C7 FAD 905 A 1 HETATM 34 C C7M FAD . . . H 5 6.089 -62.077 -38.426 1 48.19 ? C7M FAD 905 A 1 HETATM 35 C C8 FAD . . . H 5 5.867 -62.292 -35.866 1 50.06 ? C8 FAD 905 A 1 HETATM 36 C C8M FAD . . . H 5 5.051 -63.529 -35.991 1 53.83 ? C8M FAD 905 A 1 HETATM 37 C C9 FAD . . . H 5 6.085 -61.857 -34.585 1 44.36 ? C9 FAD 905 A 1 HETATM 38 C C9A FAD . . . H 5 6.815 -60.721 -34.362 1 45.06 ? C9A FAD 905 A 1 HETATM 39 N N10 FAD . . . H 5 7.085 -60.263 -33.061 1 47.98 ? N10 FAD 905 A 1 HETATM 40 C C10 FAD . . . H 5 7.878 -59.116 -32.925 1 49.24 ? C10 FAD 905 A 1 HETATM 41 C C1' FAD . . . H 5 6.525 -60.87 -31.846 1 45.97 ? C1' FAD 905 A 1 HETATM 42 C C2' FAD . . . H 5 7.348 -61.918 -31.197 1 41.79 ? C2' FAD 905 A 1 HETATM 43 O O2' FAD . . . H 5 7.829 -62.739 -32.248 1 42.34 ? O2' FAD 905 A 1 HETATM 44 C C3' FAD . . . H 5 6.448 -62.665 -30.225 1 42.98 ? C3' FAD 905 A 1 HETATM 45 O O3' FAD . . . H 5 5.579 -61.809 -29.443 1 39.73 ? O3' FAD 905 A 1 HETATM 46 C C4' FAD . . . H 5 7.307 -63.467 -29.261 1 43.89 ? C4' FAD 905 A 1 HETATM 47 O O4' FAD . . . H 5 8.44 -64.032 -29.941 1 48.13 ? O4' FAD 905 A 1 HETATM 48 C C5' FAD . . . H 5 6.425 -64.551 -28.674 1 42.9 ? C5' FAD 905 A 1 HETATM 49 O O5' FAD . . . H 5 7.077 -65.208 -27.609 1 44.09 ? O5' FAD 905 A 1 HETATM 50 P P FAD . . . H 5 6.293 -66.361 -26.81 1 39.23 ? P FAD 905 A 1 HETATM 51 O O1P FAD . . . H 5 7.369 -67.018 -26.009 1 45.93 ? O1P FAD 905 A 1 HETATM 52 O O2P FAD . . . H 5 5.143 -65.675 -26.091 1 36.05 ? O2P FAD 905 A 1 HETATM 53 O O3P FAD . . . H 5 5.691 -67.386 -27.873 1 38.06 ? O3P FAD 905 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 53 #