data_5H6R # _model_server_result.job_id YSzy_KsMH9O5ZtOfl1lolA _model_server_result.datetime_utc '2024-12-02 19:40:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 5H6R # _exptl.entry_id 5H6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H6R _cell.length_a 121.674 _cell.length_b 178.374 _cell.length_c 234.848 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id HSE _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id HSE _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id ARG _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id ARG _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5H6R _atom_sites.fract_transf_matrix[1][1] 0.008219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FAD A 1 901 1 FAD FAD . E 5 GOL A 1 902 1 GOL GOL . F 5 GOL A 1 903 2 GOL GOL . G 6 HOH A 1 1001 25 HOH HOH . G 6 HOH A 2 1002 23 HOH HOH . G 6 HOH A 3 1003 19 HOH HOH . G 6 HOH A 4 1004 10 HOH HOH . G 6 HOH A 5 1005 57 HOH HOH . G 6 HOH A 6 1006 28 HOH HOH . G 6 HOH A 7 1007 4 HOH HOH . G 6 HOH A 8 1008 13 HOH HOH . G 6 HOH A 9 1009 12 HOH HOH . G 6 HOH A 10 1010 2 HOH HOH . G 6 HOH A 11 1011 8 HOH HOH . G 6 HOH A 12 1012 62 HOH HOH . G 6 HOH A 13 1013 39 HOH HOH . G 6 HOH A 14 1014 27 HOH HOH . G 6 HOH A 15 1015 41 HOH HOH . G 6 HOH A 16 1016 24 HOH HOH . G 6 HOH A 17 1017 37 HOH HOH . G 6 HOH A 18 1018 18 HOH HOH . G 6 HOH A 19 1019 1 HOH HOH . G 6 HOH A 20 1020 30 HOH HOH . G 6 HOH A 21 1021 21 HOH HOH . G 6 HOH A 22 1022 3 HOH HOH . G 6 HOH A 23 1023 53 HOH HOH . G 6 HOH A 24 1024 26 HOH HOH . G 6 HOH A 25 1025 50 HOH HOH . G 6 HOH A 26 1026 7 HOH HOH . G 6 HOH A 27 1027 6 HOH HOH . G 6 HOH A 28 1028 15 HOH HOH . G 6 HOH A 29 1029 5 HOH HOH . G 6 HOH A 30 1030 17 HOH HOH . G 6 HOH A 31 1031 38 HOH HOH . G 6 HOH A 32 1032 14 HOH HOH . G 6 HOH A 33 1033 42 HOH HOH . G 6 HOH A 34 1034 52 HOH HOH . G 6 HOH A 35 1035 9 HOH HOH . G 6 HOH A 36 1036 22 HOH HOH . G 6 HOH A 37 1037 29 HOH HOH . G 6 HOH A 38 1038 20 HOH HOH . G 6 HOH A 39 1039 43 HOH HOH . G 6 HOH A 40 1040 55 HOH HOH . G 6 HOH A 41 1041 65 HOH HOH . G 6 HOH A 42 1042 16 HOH HOH . G 6 HOH A 43 1043 33 HOH HOH . G 6 HOH A 44 1044 40 HOH HOH . G 6 HOH A 45 1045 11 HOH HOH . G 6 HOH A 46 1046 36 HOH HOH . G 6 HOH A 47 1047 60 HOH HOH . G 6 HOH A 48 1048 35 HOH HOH . G 6 HOH A 49 1049 45 HOH HOH . G 6 HOH A 50 1050 48 HOH HOH . G 6 HOH A 51 1051 32 HOH HOH . G 6 HOH A 52 1052 31 HOH HOH . G 6 HOH A 53 1053 68 HOH HOH . G 6 HOH A 54 1054 51 HOH HOH . G 6 HOH A 55 1055 61 HOH HOH . G 6 HOH A 56 1056 69 HOH HOH . G 6 HOH A 57 1057 54 HOH HOH . G 6 HOH A 58 1058 44 HOH HOH . G 6 HOH A 59 1059 46 HOH HOH . G 6 HOH A 60 1060 34 HOH HOH . G 6 HOH A 61 1061 70 HOH HOH . G 6 HOH A 62 1062 47 HOH HOH . G 6 HOH A 63 1063 67 HOH HOH . G 6 HOH A 64 1064 63 HOH HOH . G 6 HOH A 65 1065 49 HOH HOH . G 6 HOH A 66 1066 56 HOH HOH . G 6 HOH A 67 1067 59 HOH HOH . G 6 HOH A 68 1068 66 HOH HOH . H 6 HOH C 1 101 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 4 -67.53 -21.888 -28.788 1 48.22 ? PA FAD 901 A 1 HETATM 2 O O1A FAD . . . D 4 -66.646 -21.432 -29.931 1 46.29 ? O1A FAD 901 A 1 HETATM 3 O O2A FAD . . . D 4 -68.863 -22.519 -29.095 1 48.96 ? O2A FAD 901 A 1 HETATM 4 O O5B FAD . . . D 4 -67.803 -20.66 -27.782 1 49.06 ? O5B FAD 901 A 1 HETATM 5 C C5B FAD . . . D 4 -66.887 -19.571 -27.667 1 46.12 ? C5B FAD 901 A 1 HETATM 6 C C4B FAD . . . D 4 -67.619 -18.273 -27.967 1 44.67 ? C4B FAD 901 A 1 HETATM 7 O O4B FAD . . . D 4 -66.747 -17.172 -27.72 1 44.69 ? O4B FAD 901 A 1 HETATM 8 C C3B FAD . . . D 4 -68.072 -18.149 -29.417 1 44.66 ? C3B FAD 901 A 1 HETATM 9 O O3B FAD . . . D 4 -69.475 -17.885 -29.41 1 45.13 ? O3B FAD 901 A 1 HETATM 10 C C2B FAD . . . D 4 -67.306 -16.958 -29.97 1 44.13 ? C2B FAD 901 A 1 HETATM 11 O O2B FAD . . . D 4 -68.056 -16.174 -30.902 1 43.44 ? O2B FAD 901 A 1 HETATM 12 C C1B FAD . . . D 4 -66.973 -16.174 -28.712 1 43.85 ? C1B FAD 901 A 1 HETATM 13 N N9A FAD . . . D 4 -65.8 -15.271 -28.847 1 44.05 ? N9A FAD 901 A 1 HETATM 14 C C8A FAD . . . D 4 -64.672 -15.466 -29.57 1 43.02 ? C8A FAD 901 A 1 HETATM 15 N N7A FAD . . . D 4 -63.827 -14.409 -29.451 1 42.75 ? N7A FAD 901 A 1 HETATM 16 C C5A FAD . . . D 4 -64.419 -13.511 -28.634 1 42.76 ? C5A FAD 901 A 1 HETATM 17 C C6A FAD . . . D 4 -64.084 -12.177 -28.069 1 42.77 ? C6A FAD 901 A 1 HETATM 18 N N6A FAD . . . D 4 -62.912 -11.568 -28.37 1 42.76 ? N6A FAD 901 A 1 HETATM 19 N N1A FAD . . . D 4 -64.986 -11.582 -27.244 1 43.07 ? N1A FAD 901 A 1 HETATM 20 C C2A FAD . . . D 4 -66.164 -12.168 -26.923 1 43.1 ? C2A FAD 901 A 1 HETATM 21 N N3A FAD . . . D 4 -66.533 -13.377 -27.399 1 43.03 ? N3A FAD 901 A 1 HETATM 22 C C4A FAD . . . D 4 -65.719 -14.085 -28.235 1 43.42 ? C4A FAD 901 A 1 HETATM 23 N N1 FAD . . . D 4 -69.176 -31.592 -31.717 1 53.48 ? N1 FAD 901 A 1 HETATM 24 C C2 FAD . . . D 4 -69.929 -32.716 -31.592 1 54.8 ? C2 FAD 901 A 1 HETATM 25 O O2 FAD . . . D 4 -70.143 -33.169 -30.449 1 55.25 ? O2 FAD 901 A 1 HETATM 26 N N3 FAD . . . D 4 -70.446 -33.362 -32.661 1 56.11 ? N3 FAD 901 A 1 HETATM 27 C C4 FAD . . . D 4 -70.262 -32.937 -33.924 1 55.19 ? C4 FAD 901 A 1 HETATM 28 O O4 FAD . . . D 4 -70.753 -33.55 -34.894 1 58.16 ? O4 FAD 901 A 1 HETATM 29 C C4X FAD . . . D 4 -69.448 -31.72 -34.149 1 54.07 ? C4X FAD 901 A 1 HETATM 30 N N5 FAD . . . D 4 -69.218 -31.234 -35.391 1 53.21 ? N5 FAD 901 A 1 HETATM 31 C C5X FAD . . . D 4 -68.485 -30.112 -35.585 1 53.06 ? C5X FAD 901 A 1 HETATM 32 C C6 FAD . . . D 4 -68.271 -29.644 -36.884 1 52.74 ? C6 FAD 901 A 1 HETATM 33 C C7 FAD . . . D 4 -67.525 -28.486 -37.1 1 52.99 ? C7 FAD 901 A 1 HETATM 34 C C7M FAD . . . D 4 -67.318 -28.005 -38.517 1 52.42 ? C7M FAD 901 A 1 HETATM 35 C C8 FAD . . . D 4 -66.95 -27.756 -35.921 1 53.9 ? C8 FAD 901 A 1 HETATM 36 C C8M FAD . . . D 4 -66.146 -26.498 -36.073 1 53.87 ? C8M FAD 901 A 1 HETATM 37 C C9 FAD . . . D 4 -67.159 -28.224 -34.629 1 52.92 ? C9 FAD 901 A 1 HETATM 38 C C9A FAD . . . D 4 -67.908 -29.382 -34.407 1 53.32 ? C9A FAD 901 A 1 HETATM 39 N N10 FAD . . . D 4 -68.143 -29.876 -33.094 1 53.48 ? N10 FAD 901 A 1 HETATM 40 C C10 FAD . . . D 4 -68.904 -31.053 -32.934 1 53.71 ? C10 FAD 901 A 1 HETATM 41 C C1' FAD . . . D 4 -67.564 -29.216 -31.92 1 52.72 ? C1' FAD 901 A 1 HETATM 42 C C2' FAD . . . D 4 -68.475 -28.294 -31.151 1 50.87 ? C2' FAD 901 A 1 HETATM 43 O O2' FAD . . . D 4 -69.06 -27.379 -32.077 1 51.84 ? O2' FAD 901 A 1 HETATM 44 C C3' FAD . . . D 4 -67.599 -27.538 -30.158 1 50.82 ? C3' FAD 901 A 1 HETATM 45 O O3' FAD . . . D 4 -66.705 -28.438 -29.476 1 49.14 ? O3' FAD 901 A 1 HETATM 46 C C4' FAD . . . D 4 -68.393 -26.737 -29.128 1 50.16 ? C4' FAD 901 A 1 HETATM 47 O O4' FAD . . . D 4 -69.524 -26.074 -29.718 1 49.11 ? O4' FAD 901 A 1 HETATM 48 C C5' FAD . . . D 4 -67.452 -25.694 -28.559 1 48.82 ? C5' FAD 901 A 1 HETATM 49 O O5' FAD . . . D 4 -68.129 -24.935 -27.572 1 48.4 ? O5' FAD 901 A 1 HETATM 50 P P FAD . . . D 4 -67.327 -23.83 -26.727 1 47.06 ? P FAD 901 A 1 HETATM 51 O O1P FAD . . . D 4 -68.362 -23.064 -25.94 1 47.77 ? O1P FAD 901 A 1 HETATM 52 O O2P FAD . . . D 4 -66.193 -24.533 -26.021 1 44.71 ? O2P FAD 901 A 1 HETATM 53 O O3P FAD . . . D 4 -66.671 -22.866 -27.842 1 46.73 ? O3P FAD 901 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #