data_5H6R # _model_server_result.job_id B8KSp02-QYn5ujXP8KqiRQ _model_server_result.datetime_utc '2024-11-04 20:24:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5h6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 5H6R # _exptl.entry_id 5H6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5H6R _cell.length_a 121.674 _cell.length_b 178.374 _cell.length_c 234.848 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id HSE _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id HSE _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id ARG _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id ARG _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 5H6R _atom_sites.fract_transf_matrix[1][1] 0.008219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FAD A 1 901 1 FAD FAD . E 5 GOL A 1 902 1 GOL GOL . F 5 GOL A 1 903 2 GOL GOL . G 6 HOH A 1 1001 25 HOH HOH . G 6 HOH A 2 1002 23 HOH HOH . G 6 HOH A 3 1003 19 HOH HOH . G 6 HOH A 4 1004 10 HOH HOH . G 6 HOH A 5 1005 57 HOH HOH . G 6 HOH A 6 1006 28 HOH HOH . G 6 HOH A 7 1007 4 HOH HOH . G 6 HOH A 8 1008 13 HOH HOH . G 6 HOH A 9 1009 12 HOH HOH . G 6 HOH A 10 1010 2 HOH HOH . G 6 HOH A 11 1011 8 HOH HOH . G 6 HOH A 12 1012 62 HOH HOH . G 6 HOH A 13 1013 39 HOH HOH . G 6 HOH A 14 1014 27 HOH HOH . G 6 HOH A 15 1015 41 HOH HOH . G 6 HOH A 16 1016 24 HOH HOH . G 6 HOH A 17 1017 37 HOH HOH . G 6 HOH A 18 1018 18 HOH HOH . G 6 HOH A 19 1019 1 HOH HOH . G 6 HOH A 20 1020 30 HOH HOH . G 6 HOH A 21 1021 21 HOH HOH . G 6 HOH A 22 1022 3 HOH HOH . G 6 HOH A 23 1023 53 HOH HOH . G 6 HOH A 24 1024 26 HOH HOH . G 6 HOH A 25 1025 50 HOH HOH . G 6 HOH A 26 1026 7 HOH HOH . G 6 HOH A 27 1027 6 HOH HOH . G 6 HOH A 28 1028 15 HOH HOH . G 6 HOH A 29 1029 5 HOH HOH . G 6 HOH A 30 1030 17 HOH HOH . G 6 HOH A 31 1031 38 HOH HOH . G 6 HOH A 32 1032 14 HOH HOH . G 6 HOH A 33 1033 42 HOH HOH . G 6 HOH A 34 1034 52 HOH HOH . G 6 HOH A 35 1035 9 HOH HOH . G 6 HOH A 36 1036 22 HOH HOH . G 6 HOH A 37 1037 29 HOH HOH . G 6 HOH A 38 1038 20 HOH HOH . G 6 HOH A 39 1039 43 HOH HOH . G 6 HOH A 40 1040 55 HOH HOH . G 6 HOH A 41 1041 65 HOH HOH . G 6 HOH A 42 1042 16 HOH HOH . G 6 HOH A 43 1043 33 HOH HOH . G 6 HOH A 44 1044 40 HOH HOH . G 6 HOH A 45 1045 11 HOH HOH . G 6 HOH A 46 1046 36 HOH HOH . G 6 HOH A 47 1047 60 HOH HOH . G 6 HOH A 48 1048 35 HOH HOH . G 6 HOH A 49 1049 45 HOH HOH . G 6 HOH A 50 1050 48 HOH HOH . G 6 HOH A 51 1051 32 HOH HOH . G 6 HOH A 52 1052 31 HOH HOH . G 6 HOH A 53 1053 68 HOH HOH . G 6 HOH A 54 1054 51 HOH HOH . G 6 HOH A 55 1055 61 HOH HOH . G 6 HOH A 56 1056 69 HOH HOH . G 6 HOH A 57 1057 54 HOH HOH . G 6 HOH A 58 1058 44 HOH HOH . G 6 HOH A 59 1059 46 HOH HOH . G 6 HOH A 60 1060 34 HOH HOH . G 6 HOH A 61 1061 70 HOH HOH . G 6 HOH A 62 1062 47 HOH HOH . G 6 HOH A 63 1063 67 HOH HOH . G 6 HOH A 64 1064 63 HOH HOH . G 6 HOH A 65 1065 49 HOH HOH . G 6 HOH A 66 1066 56 HOH HOH . G 6 HOH A 67 1067 59 HOH HOH . G 6 HOH A 68 1068 66 HOH HOH . H 6 HOH C 1 101 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 -49.982 -40.741 -43.631 1 71.85 ? C1 GOL 902 A 1 HETATM 2 O O1 GOL . . . E 5 -50.918 -39.687 -43.377 1 70.01 ? O1 GOL 902 A 1 HETATM 3 C C2 GOL . . . E 5 -50.349 -41.421 -44.945 1 72.71 ? C2 GOL 902 A 1 HETATM 4 O O2 GOL . . . E 5 -50.213 -40.488 -46.029 1 70.26 ? O2 GOL 902 A 1 HETATM 5 C C3 GOL . . . E 5 -49.468 -42.653 -45.151 1 74.04 ? C3 GOL 902 A 1 HETATM 6 O O3 GOL . . . E 5 -48.364 -42.371 -46.018 1 76.13 ? O3 GOL 902 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #